├── LICENSE ├── README.md ├── docs ├── CNAME ├── _config.yml ├── _includes │ └── head_custom.html ├── _sass │ └── color_schemes │ │ └── custom.scss ├── android-chrome-192x192.png ├── android-chrome-512x512.png ├── apple-touch-icon.png ├── barcode-design.md ├── browserconfig.xml ├── changelog.md ├── faq │ ├── Speed.md │ ├── adapter-types.md │ ├── alignment.md │ ├── barcode-score.md │ ├── barcoded-adapter.md │ ├── biosample.md │ ├── clr-or-ccs.md │ ├── errors.md │ ├── filter-input.md │ ├── filter-scoring.md │ ├── hifi-presets.md │ ├── how-to-run.md │ ├── index.md │ ├── infer.md │ ├── isoseq.md │ ├── mechanical.md │ ├── memory.md │ ├── precision.md │ ├── primer.md │ ├── qc.md │ ├── split-output.md │ ├── undo.md │ ├── unexpected-pairs.md │ ├── universal-sequence.md │ └── window-size.md ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── get-started.md ├── img │ ├── 384different.yield_vs_ppv.png │ ├── 384same.yield_vs_ppv.png │ ├── barcode_overview.png │ ├── barcoding_schemes.png │ ├── ccs.yield_vs_ppv.png │ ├── ccs_only_scores.png │ ├── ccs_only_subread_scores.png │ ├── lima_2022.png │ ├── lima_card.png │ ├── lima_card_2022.png │ ├── lima_pb.png │ ├── minrefspan.png │ ├── plots │ │ ├── counts_group.png │ │ ├── counts_nogroup.png │ │ ├── detail_hq_length_hist_barcoded_or_not.png │ │ ├── detail_hq_length_hist_group_free_y.png │ │ ├── detail_hq_length_hist_group_same_y.png │ │ ├── detail_hq_length_linehist_nogroup.png │ │ ├── detail_hq_length_vs_score.png │ │ ├── detail_num_adapters.png │ │ ├── detail_read_length_hist_barcoded_or_not.png │ │ ├── detail_read_length_hist_group_free_y.png │ │ ├── detail_read_length_hist_group_same_y.png │ │ ├── detail_read_length_linehist_nogroup.png │ │ ├── detail_read_length_vs_score.png │ │ ├── detail_score_vs_yield.png │ │ ├── detail_scores_per_adapter.png │ │ ├── detail_yield_base.png │ │ ├── detail_yield_read.png │ │ ├── detail_yield_zmw.png │ │ ├── summary_bad_adapter_ratio.png │ │ ├── summary_hq_length_hist_2d.png │ │ ├── summary_read_length_hist_2d.png │ │ ├── summary_score_hist.png │ │ ├── summary_score_hist_2d.png │ │ └── summary_yield_zmw.png │ ├── subread_only_scores.png │ ├── venn_diagramm_1.png │ ├── venn_diagramm_2.png │ └── windowsize.png ├── index.md ├── mstile-150x150.png ├── nomenclature.md ├── output │ ├── bam.md │ ├── clipped.md │ ├── counts.md │ ├── fastx.md │ ├── index.md │ ├── removed.md │ ├── report.md │ └── summary.md ├── robots.txt └── site.webmanifest └── scripts └── r ├── report_detail.R └── report_summary.R /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PacificBiosciences/barcoding/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PacificBiosciences/barcoding/HEAD/README.md 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