├── .gitattributes ├── .gitignore ├── LICENSE.md ├── README.md ├── ReproducibleScience.Rproj ├── ReproducibleScience_parent.Rmd ├── ReproducibleScience_parent.pdf ├── Rmarkdown.Rmd ├── Rmarkdown.pdf ├── Rmarkdown_examples ├── data.txt ├── ecology-letters.csl ├── myproject.Rmd ├── param_reports │ ├── .gitignore │ ├── coords.csv │ ├── countrydata.csv │ ├── param_country.Rmd │ ├── param_geo.Rmd │ └── param_report.Rmd └── references.bib ├── data.txt ├── data_management.Rmd ├── data_management.pdf ├── dependencies.Rmd ├── dependencies.pdf ├── header.tex ├── hideslide.lua ├── images ├── Alexey-tuit.png ├── Allen-2019.png ├── Breznau_PNAS.png ├── Breznau_PNAS_fig.jpg ├── CI.png ├── Campbell-2019.png ├── Culina-data.png ├── DC-formatting.png ├── DC-multiple-info.png ├── DC-single-info.png ├── DC_datasheet_example.jpg ├── DC_good_formatting.png ├── ESA-logo.jpg ├── ESA-policy.png ├── EcoLett.png ├── Fig1.jpg ├── Fig3.png ├── Fraser-2018-fig.png ├── Fraser-2018.png ├── Gould.png ├── Maitner2024.png ├── Nuijten.png ├── Peng_Science.png ├── Poldrack.png ├── R-Word.odg ├── RPCB_Nature.png ├── R_Word_comm.png ├── Ram-title.png ├── Reproducibility_gradient.png ├── ReproducibleMatrix.jpg ├── ReproducibleResearch_10simplerules.PNG ├── Rlogo.png ├── Rmd-exp-eng.png ├── Rmd-exp.odg ├── Rmd-exp.png ├── Rmd.png ├── Roche-2015.png ├── TrevorBranch-tweet.png ├── Vines-datalost.png ├── Vines-title.png ├── Wolkovich-1.png ├── Wolkovich-2.png ├── Wolkovich.png ├── Word-sentence.png ├── Word.jpg ├── almoraima.PNG ├── antica.png ├── bes-guide.png ├── besguide.jpg ├── bibtex.png ├── bookdown.PNG ├── cc-by-nc-sa.png ├── chunknames_debugging.png ├── ci-paper.png ├── citation_Rmd.png ├── citations-Rstudio14.png ├── citations_output.png ├── cites-advantage.png ├── citr (Case Conflict).png ├── citr.PNG ├── citr.gif ├── codecheck.png ├── copy-paste-table.gif ├── copy-paste.png ├── credit-Nature.png ├── csl.png ├── data-not-enough.jpg ├── dataNOvc.jpg ├── datamess.png ├── datavc.jpg ├── datos-codigo-texto.jpg ├── debugging_phdcomics.gif ├── drake-here.png ├── drake-plan.png ├── elpais.png ├── email.png ├── emailmeme.jpg ├── embed.png ├── excel-genes.png ├── excel.png ├── filescomic.png ├── gatherdata.png ├── git-Ram.jpg ├── git.jpg ├── git.png ├── git_collaboration.png ├── git_versioning.png ├── github.jpg ├── good-enough.png ├── goodenough.png ├── gramr.PNG ├── gramr.jpg ├── grateful.png ├── happy-collab.jpg ├── holepunch.png ├── horrormovie.PNG ├── html_output.png ├── idea.png ├── incentives.png ├── integrated_workflow.png ├── interactive_plot.png ├── liftr.png ├── many-analysts.png ├── myproject.png ├── naming_figs.png ├── noamross_tweet.PNG ├── notebook.png ├── outline.png ├── param_report_render.png ├── pdf.png ├── pdf_output.png ├── physics-code-error-2.png ├── physics-code-error.png ├── pnas.png ├── projects.png ├── projects_new.png ├── puzzle.jpeg ├── quarto.png ├── quarto2.png ├── quarto_ms.png ├── rang.png ├── rcompendium.png ├── rcrossref-doi.png ├── rcrossref-metadata.png ├── rcrossref.jpg ├── readme.png ├── references.png ├── report.png ├── reprex.PNG ├── repro-crisis-Nature-2.png ├── repro-crisis-Nature.png ├── repro_gradient.png ├── reproducibleR.png ├── reproducibleR_2.png ├── reproducibleR_3.png ├── reproms.png ├── revising_nonrepro.png ├── rix.png ├── rmarkdown-book.PNG ├── rmarkdown-cheatsheet.png ├── rmarkdown-reference.png ├── rmarkdown.png ├── rmdlogo.png ├── rmdrstudio.PNG ├── rrtools-addin.png ├── rstudio-workspace.png ├── rstudio.png ├── rstudio_templates.png ├── sotobosque.png ├── statcheck.png ├── stolendata.png ├── synamyn.png ├── tabla-traducida.png ├── tabular_data.png ├── template-github.png ├── template-pkg.png ├── template.png ├── text-data-code.png ├── tidydata.png ├── trackdown-workflow.png ├── travis.PNG ├── trevor_tweet.png ├── tugboat.png ├── turingway.jpg ├── unclear-methods.png ├── unclear-methods1.png ├── unclear-methods2.png ├── vcontrol-phdcomic.png ├── version_control_PhD.png ├── 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