├── CTCF_known2.meme ├── NA12878.CTCF_known2.chr1.bed.gz ├── NA12878.CTCF_known2.scores.chr1.gz ├── README.md ├── SRR891268.1.fq.gz ├── SRR891268.2.fq.gz ├── chr20.fa.gz ├── commands └── run_centipede.R /CTCF_known2.meme: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/CTCF_known2.meme -------------------------------------------------------------------------------- /NA12878.CTCF_known2.chr1.bed.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/NA12878.CTCF_known2.chr1.bed.gz -------------------------------------------------------------------------------- /NA12878.CTCF_known2.scores.chr1.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/NA12878.CTCF_known2.scores.chr1.gz -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/README.md -------------------------------------------------------------------------------- /SRR891268.1.fq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/SRR891268.1.fq.gz -------------------------------------------------------------------------------- /SRR891268.2.fq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/SRR891268.2.fq.gz -------------------------------------------------------------------------------- /chr20.fa.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/chr20.fa.gz -------------------------------------------------------------------------------- /commands: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/commands -------------------------------------------------------------------------------- /run_centipede.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ParkerLab/bioinf545/HEAD/run_centipede.R --------------------------------------------------------------------------------