├── .coveragerc ├── .env ├── .flake8 ├── .github ├── dependabot.yml └── workflows │ └── build.yml ├── .gitignore ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── README.md ├── codecov.yml ├── docker-compose.yml ├── mypy.ini ├── pyproject.toml ├── requirements.txt ├── semantic_search ├── __init__.py ├── common │ └── util.py ├── demo.py ├── main.py ├── ncbi.py └── schemas.py ├── setup.py └── tests ├── conftest.py ├── test_main.py ├── test_ncbi.py └── test_semantic_search.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PathwayCommons/semantic-search/HEAD/.coveragerc -------------------------------------------------------------------------------- /.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PathwayCommons/semantic-search/HEAD/.env -------------------------------------------------------------------------------- /.flake8: 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