├── .Rbuildignore ├── .Rhistory ├── .Rproj.user ├── AEFB113 │ ├── build_options │ ├── cpp-definition-cache │ ├── pcs │ │ ├── debug-breakpoints.pper │ │ ├── files-pane.pper │ │ ├── source-pane.pper │ │ ├── windowlayoutstate.pper │ │ └── workbench-pane.pper │ ├── persistent-state │ ├── saved_source_markers │ └── sources │ │ ├── per │ │ └── t │ │ │ ├── 395D4129 │ │ │ ├── 395D4129-contents │ │ │ ├── 567412AC │ │ │ ├── 567412AC-contents │ │ │ ├── 5CD60AAD │ │ │ ├── 5CD60AAD-contents │ │ │ ├── 8A43EBAF │ │ │ ├── 8A43EBAF-contents │ │ │ ├── 8D36DD10 │ │ │ └── 8D36DD10-contents │ │ ├── prop │ │ ├── 99003297 │ │ ├── 27C833AF │ │ ├── 38CFA7E4 │ │ ├── 3DF47F02 │ │ ├── 3E1B062A │ │ ├── 40C888C2 │ │ ├── 4EF028ED │ │ ├── 541E9EB4 │ │ ├── 5AD47922 │ │ ├── 66E068E9 │ │ ├── 6B30A08E │ │ ├── 71945EAA │ │ ├── 741001D8 │ │ ├── 7458EC67 │ │ ├── 8529B4EC │ │ ├── 9C2A9EF3 │ │ ├── A5E93B4A │ │ ├── BCF06CBE │ │ ├── D431A1D3 │ │ ├── E224EDDB │ │ └── INDEX │ │ └── s-1e3d26ff │ │ ├── 38978073-contents │ │ ├── 3B2A6CC8 │ │ ├── 3B2A6CC8-contents │ │ ├── 78D1BA4E │ │ ├── 78D1BA4E-contents │ │ ├── 8706B403-contents │ │ ├── 918BD78C-contents │ │ ├── B0EA50EE-contents │ │ ├── B680E84A │ │ ├── B680E84A-contents │ │ ├── DF46F056-contents │ │ ├── E734F8CD │ │ ├── E734F8CD-contents │ │ └── suspend_file ├── D37CAE6B │ ├── build_options │ ├── cpp-definition-cache │ ├── pcs │ │ ├── files-pane.pper │ │ ├── source-pane.pper │ │ ├── windowlayoutstate.pper │ │ └── workbench-pane.pper │ ├── persistent-state │ ├── saved_source_markers │ └── sources │ │ ├── prop │ │ ├── 827BE52B │ │ ├── C95A3F4 │ │ ├── EBDBD29D │ │ └── INDEX │ │ └── s-9ff22713 │ │ ├── A641CC1F │ │ ├── A641CC1F-contents │ │ └── lock_file └── shared │ └── notebooks │ ├── 3425FC6D-02_R_document │ └── 1 │ │ └── s │ │ ├── c9l16wi1psolb │ │ └── 000002.csv │ │ ├── cfevo6z8wzp18 │ │ └── 000002.csv │ │ └── czth49owsm774 │ │ └── 000002.csv │ ├── 3DC1A89A-00_functions │ └── 1 │ │ └── s │ │ ├── c0bcy8urw536v │ │ └── 000002.csv │ │ ├── c0obz7z5zz6q9 │ │ └── 000002.csv │ │ ├── c184xe3j4g6ls │ │ └── 000002.csv │ │ ├── c1cedmdygftfy │ │ └── 000002.csv │ │ ├── c1xjm17dugpik │ │ └── 000002.csv │ │ ├── c7frgc7xi5v14 │ │ └── 000002.csv │ │ ├── carprrl8mrlkw │ │ └── 000002.csv │ │ ├── cceiopgwd1ook │ │ └── 000002.csv │ │ ├── cfpbslph20dgq │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── ck1ri0jen12kt │ │ └── 000002.csv │ │ ├── ckdphzbm8hp0y │ │ └── 000002.csv │ │ ├── cnd4wfgfo5lp8 │ │ └── 000002.csv │ │ ├── co7nn4nbf4ebg │ │ └── 000002.csv │ │ ├── col9btaxg5v8q │ │ └── 000002.csv │ │ ├── cp1jsdvwtitsc │ │ └── 000002.csv │ │ ├── ctd17qhspymyd │ │ └── 000002.csv │ │ ├── cukbznossbllb │ │ └── 000002.csv │ │ ├── cxbd98b6dpe75 │ │ └── 000002.csv │ │ └── cxixpr1xbnke4 │ │ └── 000002.csv │ ├── 4176ABD6-00_functions │ └── 1 │ │ └── s │ │ ├── c05b6lspg78a2 │ │ └── 000002.csv │ │ ├── c1x0xlea3o6jt │ │ └── 000002.csv │ │ ├── c7kw7t00ztkt9 │ │ └── 000002.csv │ │ ├── c8az9gmtblqmv │ │ └── 000002.csv │ │ ├── c8bte9o9ykach │ │ └── 000002.csv │ │ ├── cbdpfolhnowpw │ │ └── 000002.csv │ │ ├── cdbwpaegluiyg │ │ └── 000002.csv │ │ ├── cdtdoya9s0545 │ │ └── 000002.csv │ │ ├── cefxrgf9yy29y │ │ └── 000002.csv │ │ ├── chciqwlppt0cz │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── cko7t3qwhq9cz │ │ └── 000002.csv │ │ ├── clyrnq16rzspx │ │ └── 000002.csv │ │ ├── cm0efahmu4tln │ │ └── 000002.csv │ │ ├── cmw73w33yfbyh │ │ └── 000002.csv │ │ ├── cn7k9si5o3l1w │ │ └── 000002.csv │ │ ├── cqwjfdsdj3req │ │ └── 000002.csv │ │ ├── cvs98airm1kz4 │ │ └── 000002.csv │ │ ├── cwearzg71ljrq │ │ └── 000002.csv │ │ └── cww0azqtrw92z │ │ └── 000002.csv │ ├── 5E1483A8-13.ttttmp │ └── 1 │ │ └── s │ │ ├── c9zarr1870js2 │ │ └── 000002.csv │ │ ├── cgjfyln9pjn5a │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── cnm80iqypsfmm │ │ └── 000002.csv │ │ ├── ct6ynper8dsdv │ │ └── 000002.csv │ │ └── czo9way0ep5j9 │ │ └── 000002.csv │ ├── 797EC098-27_Bcell_validation │ └── 1 │ │ └── s │ │ ├── c276s8u95lt0n │ │ ├── 000002.csv │ │ ├── 000003.png │ │ └── 000004.csv │ │ ├── c3r13qle63xym │ │ └── 000002.png │ │ ├── c59ygynfazpic │ │ └── 000002.png │ │ ├── c64xamcyjg9uy │ │ └── 000002.csv │ │ ├── c8ygvacbrz1cp │ │ └── 000002.png │ │ ├── cath8bszfdre7 │ │ └── 000002.png │ │ ├── cbias40sm8itu │ │ └── 000002.csv │ │ ├── cc5qn6fze7yct │ │ └── 000002.png │ │ ├── ce8a9ecxougam │ │ └── 000002.csv │ │ ├── cemunv7ddd343 │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── cjzek3txvt78q │ │ └── 000002.png │ │ ├── clup2u982u6rs │ │ └── 000002.csv │ │ ├── cm1s76exytvst │ │ └── 000002.png │ │ ├── cm270i2luaq54 │ │ └── 000002.csv │ │ ├── cp4cspr7mziia │ │ ├── 000002.csv │ │ └── 000003.png │ │ ├── cryt42goo2c53 │ │ └── 000002.png │ │ ├── ctf2kp93k7k1o │ │ └── 000002.png │ │ ├── cxqu5end2k1li │ │ └── 000002.png │ │ ├── cxsnf9tiq67dv │ │ └── 000002.csv │ │ ├── cy6mfitglvokk │ │ ├── 000002.csv │ │ └── 000003.png │ │ └── cyqdx3n4744hf │ │ └── 000002.png │ ├── 974CBF6F-12.T.ROGUE │ └── 1 │ │ └── s │ │ ├── cad16l6900kye │ │ └── 000002.csv │ │ ├── cfc6cr1hv78uy │ │ └── 000002.csv │ │ └── chunks.json │ ├── B34C65BE-03.Illustration │ └── 1 │ │ ├── AEFB1131e3d26ff │ │ └── chunks.json │ │ └── s │ │ ├── ca4lj5k8dm165 │ │ ├── 000002.metadata │ │ └── 000002.rdf │ │ ├── cabuohaqexdux │ │ ├── 000002.metadata │ │ ├── 000002.png │ │ └── 000002.snapshot │ │ ├── cg6r5w44kuzm3 │ │ └── 000002.csv │ │ ├── cg8kao0wn09ka │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── cl4oi4sjbungz │ │ ├── 000002.csv │ │ ├── 000003.metadata │ │ └── 000003.rdf │ │ └── cnhiqj6uou6nz │ │ ├── 000002.csv │ │ ├── 000003.metadata │ │ └── 000003.png │ ├── E7702FAE-10.DC.ROUGE │ └── 1 │ │ └── s │ │ ├── c05iqhanixxeq │ │ └── 000002.png │ │ ├── c4l493bddqenp │ │ └── 000002.csv │ │ ├── c7d8iyp38te48 │ │ └── 000002.csv │ │ ├── cbiijvi5thyaa │ │ └── 000002.csv │ │ ├── chunks.json │ │ ├── cqzn99y8ewny6 │ │ └── 000002.csv │ │ └── cuddk4gy4bvnk │ │ └── 000002.csv │ ├── patch-chunk-names │ └── paths ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R └── ROGUE.R ├── README.md ├── ROGUE.Rproj ├── example.data ├── DC.rds.gz └── info.rds.gz ├── man ├── CalculateRogue.Rd ├── DetermineK.Rd ├── Entropy.Rd ├── SE_fun.Rd ├── SEplot.Rd ├── ent.toli.Rd ├── entropy_fit.Rd ├── matr.filter.Rd ├── rogue.Rd └── rogue.boxplot.Rd ├── scripts ├── Application.1.fibroblast.analysis.R ├── Application.2.Bcell.analysis.R ├── Application.3.Brain.data.analysis.R ├── Batch.effect.evaluation.R ├── Clustering.evaluation.Rmd ├── Cross.validation.R ├── Cross.validation.visualization.R ├── DE.benchmark.Reproduciblity.Rmd ├── ROGUE.reduction.simulation.vary.genes.R ├── Rare.cell.type.real.data.Rmd ├── Rare.cell.type.simulation.Rmd ├── Silhouette.ROGUE.R ├── Simulation.AUC.NB.R ├── Simulation.AUC.ZINB.R └── The.relationship.between.ROGUE.and.the.number.of.genes.R └── vignettes ├── ROGUE_Tutorials.html └── ROGUE_Tutorials.pdf /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.Rhistory: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rhistory -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/build_options: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/build_options -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/cpp-definition-cache: -------------------------------------------------------------------------------- 1 | [ 2 | ] -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/pcs/debug-breakpoints.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/pcs/debug-breakpoints.pper -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/pcs/files-pane.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/pcs/files-pane.pper -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/pcs/source-pane.pper: -------------------------------------------------------------------------------- 1 | { 2 | "activeTab" : 3 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/pcs/windowlayoutstate.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/pcs/windowlayoutstate.pper -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/pcs/workbench-pane.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/pcs/workbench-pane.pper -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/persistent-state: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/persistent-state -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/saved_source_markers: -------------------------------------------------------------------------------- 1 | {"active_set":"","sets":[]} -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/395D4129: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/395D4129 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/395D4129-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/395D4129-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/567412AC: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/567412AC -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/567412AC-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/567412AC-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/5CD60AAD: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/5CD60AAD -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/5CD60AAD-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/5CD60AAD-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/8A43EBAF: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/8A43EBAF -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/8A43EBAF-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/8A43EBAF-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/8D36DD10: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/8D36DD10 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/per/t/8D36DD10-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/per/t/8D36DD10-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/27C833AF: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/27C833AF -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/38CFA7E4: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/3DF47F02: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/3DF47F02 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/3E1B062A: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/40C888C2: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/4EF028ED: -------------------------------------------------------------------------------- 1 | { 2 | "chunk_output_type" : "inline" 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/541E9EB4: -------------------------------------------------------------------------------- 1 | { 2 | "chunk_output_type" : "inline" 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/5AD47922: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/5AD47922 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/66E068E9: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/66E068E9 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/6B30A08E: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/6B30A08E -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/71945EAA: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/71945EAA -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/741001D8: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/741001D8 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/7458EC67: -------------------------------------------------------------------------------- 1 | { 2 | "chunk_output_type" : "inline" 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/8529B4EC: -------------------------------------------------------------------------------- 1 | { 2 | "chunk_output_type" : "inline" 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/99003297: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/9C2A9EF3: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/A5E93B4A: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/A5E93B4A -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/BCF06CBE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/BCF06CBE -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/D431A1D3: -------------------------------------------------------------------------------- 1 | { 2 | "chunk_output_type" : "inline" 3 | } -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/E224EDDB: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/E224EDDB -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/prop/INDEX: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/prop/INDEX -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/38978073-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/38978073-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/3B2A6CC8: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/3B2A6CC8 -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/3B2A6CC8-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/3B2A6CC8-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/78D1BA4E: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/78D1BA4E -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/78D1BA4E-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/78D1BA4E-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/8706B403-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/8706B403-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/918BD78C-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/918BD78C-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/B0EA50EE-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/B0EA50EE-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/B680E84A: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/B680E84A -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/B680E84A-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/B680E84A-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/DF46F056-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/DF46F056-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/E734F8CD: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/E734F8CD -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/E734F8CD-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/AEFB113/sources/s-1e3d26ff/E734F8CD-contents -------------------------------------------------------------------------------- /.Rproj.user/AEFB113/sources/s-1e3d26ff/suspend_file: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/build_options: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/build_options -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/cpp-definition-cache: -------------------------------------------------------------------------------- 1 | [ 2 | ] -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/pcs/files-pane.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/pcs/files-pane.pper -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/pcs/source-pane.pper: -------------------------------------------------------------------------------- 1 | { 2 | "activeTab" : 0 3 | } -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/pcs/windowlayoutstate.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/pcs/windowlayoutstate.pper -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/pcs/workbench-pane.pper: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/pcs/workbench-pane.pper -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/persistent-state: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/persistent-state -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/saved_source_markers: -------------------------------------------------------------------------------- 1 | {"active_set":"","sets":[]} -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/prop/827BE52B: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/prop/C95A3F4: -------------------------------------------------------------------------------- 1 | { 2 | } -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/prop/EBDBD29D: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/sources/prop/EBDBD29D -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/prop/INDEX: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/sources/prop/INDEX -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/s-9ff22713/A641CC1F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/sources/s-9ff22713/A641CC1F -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/s-9ff22713/A641CC1F-contents: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/D37CAE6B/sources/s-9ff22713/A641CC1F-contents -------------------------------------------------------------------------------- /.Rproj.user/D37CAE6B/sources/s-9ff22713/lock_file: -------------------------------------------------------------------------------- 1 | 21507 -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/c9l16wi1psolb/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/c9l16wi1psolb/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/cfevo6z8wzp18/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/cfevo6z8wzp18/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/czth49owsm774/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3425FC6D-02_R_document/1/s/czth49owsm774/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c0bcy8urw536v/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c0bcy8urw536v/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c0obz7z5zz6q9/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c0obz7z5zz6q9/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c184xe3j4g6ls/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c184xe3j4g6ls/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c1cedmdygftfy/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c1cedmdygftfy/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c1xjm17dugpik/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c1xjm17dugpik/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c7frgc7xi5v14/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/c7frgc7xi5v14/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/carprrl8mrlkw/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/carprrl8mrlkw/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cceiopgwd1ook/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cceiopgwd1ook/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cfpbslph20dgq/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cfpbslph20dgq/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ck1ri0jen12kt/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ck1ri0jen12kt/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ckdphzbm8hp0y/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ckdphzbm8hp0y/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cnd4wfgfo5lp8/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cnd4wfgfo5lp8/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/co7nn4nbf4ebg/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/co7nn4nbf4ebg/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/col9btaxg5v8q/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/col9btaxg5v8q/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cp1jsdvwtitsc/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cp1jsdvwtitsc/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ctd17qhspymyd/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/ctd17qhspymyd/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cukbznossbllb/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cukbznossbllb/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cxbd98b6dpe75/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cxbd98b6dpe75/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cxixpr1xbnke4/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/3DC1A89A-00_functions/1/s/cxixpr1xbnke4/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c05b6lspg78a2/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c05b6lspg78a2/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c1x0xlea3o6jt/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c1x0xlea3o6jt/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c7kw7t00ztkt9/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c7kw7t00ztkt9/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c8az9gmtblqmv/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c8az9gmtblqmv/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c8bte9o9ykach/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/c8bte9o9ykach/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cbdpfolhnowpw/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cbdpfolhnowpw/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cdbwpaegluiyg/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cdbwpaegluiyg/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cdtdoya9s0545/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cdtdoya9s0545/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cefxrgf9yy29y/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cefxrgf9yy29y/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/chciqwlppt0cz/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/chciqwlppt0cz/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cko7t3qwhq9cz/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cko7t3qwhq9cz/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/clyrnq16rzspx/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/clyrnq16rzspx/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cm0efahmu4tln/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cm0efahmu4tln/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cmw73w33yfbyh/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cmw73w33yfbyh/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cn7k9si5o3l1w/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cn7k9si5o3l1w/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cqwjfdsdj3req/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cqwjfdsdj3req/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cvs98airm1kz4/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cvs98airm1kz4/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cwearzg71ljrq/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cwearzg71ljrq/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cww0azqtrw92z/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/4176ABD6-00_functions/1/s/cww0azqtrw92z/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/c9zarr1870js2/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/c9zarr1870js2/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/cgjfyln9pjn5a/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/cgjfyln9pjn5a/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/cnm80iqypsfmm/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/cnm80iqypsfmm/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/ct6ynper8dsdv/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/ct6ynper8dsdv/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/czo9way0ep5j9/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/5E1483A8-13.ttttmp/1/s/czo9way0ep5j9/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000003.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000003.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000004.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c276s8u95lt0n/000004.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c3r13qle63xym/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c3r13qle63xym/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c59ygynfazpic/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c59ygynfazpic/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c64xamcyjg9uy/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c64xamcyjg9uy/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c8ygvacbrz1cp/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/c8ygvacbrz1cp/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cath8bszfdre7/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cath8bszfdre7/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cbias40sm8itu/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cbias40sm8itu/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cc5qn6fze7yct/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cc5qn6fze7yct/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/ce8a9ecxougam/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/ce8a9ecxougam/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cemunv7ddd343/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cemunv7ddd343/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cjzek3txvt78q/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cjzek3txvt78q/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/clup2u982u6rs/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/clup2u982u6rs/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cm1s76exytvst/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cm1s76exytvst/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cm270i2luaq54/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cm270i2luaq54/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cp4cspr7mziia/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cp4cspr7mziia/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cp4cspr7mziia/000003.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cp4cspr7mziia/000003.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cryt42goo2c53/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cryt42goo2c53/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/ctf2kp93k7k1o/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/ctf2kp93k7k1o/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cxqu5end2k1li/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cxqu5end2k1li/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cxsnf9tiq67dv/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cxsnf9tiq67dv/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cy6mfitglvokk/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cy6mfitglvokk/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cy6mfitglvokk/000003.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cy6mfitglvokk/000003.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cyqdx3n4744hf/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/797EC098-27_Bcell_validation/1/s/cyqdx3n4744hf/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/cad16l6900kye/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/cad16l6900kye/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/cfc6cr1hv78uy/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/cfc6cr1hv78uy/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/974CBF6F-12.T.ROGUE/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/AEFB1131e3d26ff/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/AEFB1131e3d26ff/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/ca4lj5k8dm165/000002.metadata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/ca4lj5k8dm165/000002.metadata -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/ca4lj5k8dm165/000002.rdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/ca4lj5k8dm165/000002.rdf -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.metadata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.metadata -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.snapshot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cabuohaqexdux/000002.snapshot -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cg6r5w44kuzm3/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cg6r5w44kuzm3/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cg8kao0wn09ka/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cg8kao0wn09ka/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cl4oi4sjbungz/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cl4oi4sjbungz/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cl4oi4sjbungz/000003.metadata: -------------------------------------------------------------------------------- 1 | {"classes":["data.frame"],"ncol":4,"nrow":7} -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cl4oi4sjbungz/000003.rdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cl4oi4sjbungz/000003.rdf -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000003.metadata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000003.metadata -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000003.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/B34C65BE-03.Illustration/1/s/cnhiqj6uou6nz/000003.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c05iqhanixxeq/000002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c05iqhanixxeq/000002.png -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c4l493bddqenp/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c4l493bddqenp/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c7d8iyp38te48/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/c7d8iyp38te48/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/cbiijvi5thyaa/000002.csv: -------------------------------------------------------------------------------- 1 | "0","```r 2 | for (i in 1:6) { 3 | print(cal_rogue(ent.all.res[[i]], k = 200)) 4 | } 5 | ```" 6 | -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/chunks.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/chunks.json -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/cqzn99y8ewny6/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/cqzn99y8ewny6/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/cuddk4gy4bvnk/000002.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/E7702FAE-10.DC.ROUGE/1/s/cuddk4gy4bvnk/000002.csv -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/patch-chunk-names: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.Rproj.user/shared/notebooks/paths: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/.Rproj.user/shared/notebooks/paths -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/LICENSE -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | exportPattern("^[[:alpha:]]+") 2 | -------------------------------------------------------------------------------- /R/ROGUE.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/R/ROGUE.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/README.md -------------------------------------------------------------------------------- /ROGUE.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/ROGUE.Rproj -------------------------------------------------------------------------------- /example.data/DC.rds.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/example.data/DC.rds.gz -------------------------------------------------------------------------------- /example.data/info.rds.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/example.data/info.rds.gz -------------------------------------------------------------------------------- /man/CalculateRogue.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/CalculateRogue.Rd -------------------------------------------------------------------------------- /man/DetermineK.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/DetermineK.Rd -------------------------------------------------------------------------------- /man/Entropy.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/Entropy.Rd -------------------------------------------------------------------------------- /man/SE_fun.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/SE_fun.Rd -------------------------------------------------------------------------------- /man/SEplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/SEplot.Rd -------------------------------------------------------------------------------- /man/ent.toli.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/ent.toli.Rd -------------------------------------------------------------------------------- /man/entropy_fit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/entropy_fit.Rd -------------------------------------------------------------------------------- /man/matr.filter.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/matr.filter.Rd -------------------------------------------------------------------------------- /man/rogue.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/rogue.Rd -------------------------------------------------------------------------------- /man/rogue.boxplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/man/rogue.boxplot.Rd -------------------------------------------------------------------------------- /scripts/Application.1.fibroblast.analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Application.1.fibroblast.analysis.R -------------------------------------------------------------------------------- /scripts/Application.2.Bcell.analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Application.2.Bcell.analysis.R -------------------------------------------------------------------------------- /scripts/Application.3.Brain.data.analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Application.3.Brain.data.analysis.R -------------------------------------------------------------------------------- /scripts/Batch.effect.evaluation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Batch.effect.evaluation.R -------------------------------------------------------------------------------- /scripts/Clustering.evaluation.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Clustering.evaluation.Rmd -------------------------------------------------------------------------------- /scripts/Cross.validation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Cross.validation.R -------------------------------------------------------------------------------- /scripts/Cross.validation.visualization.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Cross.validation.visualization.R -------------------------------------------------------------------------------- /scripts/DE.benchmark.Reproduciblity.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/DE.benchmark.Reproduciblity.Rmd -------------------------------------------------------------------------------- /scripts/ROGUE.reduction.simulation.vary.genes.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/ROGUE.reduction.simulation.vary.genes.R -------------------------------------------------------------------------------- /scripts/Rare.cell.type.real.data.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Rare.cell.type.real.data.Rmd -------------------------------------------------------------------------------- /scripts/Rare.cell.type.simulation.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Rare.cell.type.simulation.Rmd -------------------------------------------------------------------------------- /scripts/Silhouette.ROGUE.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Silhouette.ROGUE.R -------------------------------------------------------------------------------- /scripts/Simulation.AUC.NB.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Simulation.AUC.NB.R -------------------------------------------------------------------------------- /scripts/Simulation.AUC.ZINB.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/Simulation.AUC.ZINB.R -------------------------------------------------------------------------------- /scripts/The.relationship.between.ROGUE.and.the.number.of.genes.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/scripts/The.relationship.between.ROGUE.and.the.number.of.genes.R -------------------------------------------------------------------------------- /vignettes/ROGUE_Tutorials.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/vignettes/ROGUE_Tutorials.html -------------------------------------------------------------------------------- /vignettes/ROGUE_Tutorials.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PaulingLiu/ROGUE/HEAD/vignettes/ROGUE_Tutorials.pdf --------------------------------------------------------------------------------