├── LICENSE ├── MICCAI2024-Poster.pdf ├── MICCAI2024-TopCoW PPT.pdf ├── README.md ├── cbDice_cal_demo ├── deformation.py ├── diameter_imbalance.py ├── metrics │ └── BettiMatching.py └── translation.py ├── loss ├── b_dou_loss.py ├── cbdice_loss.py ├── cldice_loss.py ├── compound_cbdice_loss.py ├── compound_cldice_loss.py ├── compound_losses.py ├── dice.py ├── robust_ce_loss.py ├── skeletonize.py └── soft_skeleton.py └── nnUNetTrainer_variants ├── NexToU.py ├── NexToU_Encoder_Decoder.py ├── monai └── swin_unetr.py ├── nnUNetTrainerNoDeepSupervision.py ├── nnUNetTrainer_CE_B_DoU_NoDeepSupervision.py ├── nnUNetTrainer_CE_B_DoU_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_CE_DC_B_DoU_NoDeepSupervision.py ├── nnUNetTrainer_CE_DC_B_DoU_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_CE_DC_CBDC.py ├── nnUNetTrainer_CE_DC_CBDC_NoDeepSupervision.py ├── nnUNetTrainer_CE_DC_CBDC_NoDeepSupervision_NoMirroring.py ├── nnUNetTrainer_CE_DC_CBDC_NoDeepSupervision_NoMirroring_Xepochs.py ├── nnUNetTrainer_CE_DC_CBDC_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_CE_DC_CBDC_NoMirroring.py ├── nnUNetTrainer_CE_DC_CBDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_CE_DC_CLDC.py ├── nnUNetTrainer_CE_DC_CLDC_NoDeepSupervision.py ├── nnUNetTrainer_CE_DC_CLDC_NoDeepSupervision_NoMirroring.py ├── nnUNetTrainer_CE_DC_CLDC_NoDeepSupervision_NoMirroring_Xepochs.py ├── nnUNetTrainer_CE_DC_CLDC_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_CE_DC_CLDC_NoMirroring.py ├── nnUNetTrainer_CE_DC_CLDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_CE_DC_CL_M_DC_NoDeepSupervision.py ├── nnUNetTrainer_CE_DC_CL_M_DC_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_B_DoU.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_B_DoU_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_B_DoU.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_B_DoU_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CBDC.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CBDC_NoMirroring.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CBDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CBDC_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CLDC.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CLDC_NoMirroring.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CLDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CLDC_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CL_M_DC.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_CE_DC_CL_M_DC_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_NoMirroring.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_NoMirroring_Xepochs.py ├── nnUNetTrainer_NexToU_NoDeepSupervision_Xepochs.py ├── nnUNetTrainer_NoDeepSupervision_NoMirroring.py ├── nnUNetTrainer_NoDeepSupervision_NoMirroring_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_B_DoU.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_B_DoU_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_B_DoU.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_B_DoU_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CBDC.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CBDC_NoMirroring.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CBDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CBDC_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CLDC.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CLDC_NoMirroring.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CLDC_NoMirroring_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CLDC_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CL_M_DC.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_CE_DC_CL_M_DC_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_NoMirroring.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_NoMirroring_Xepochs.py ├── nnUNetTrainer_SwinUNETR_NoDeepSupervision_Xepochs.py ├── pos_embed.py ├── torch_edge.py └── torch_nn.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PengchengShi1220/cbDice/HEAD/LICENSE -------------------------------------------------------------------------------- /MICCAI2024-Poster.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PengchengShi1220/cbDice/HEAD/MICCAI2024-Poster.pdf -------------------------------------------------------------------------------- /MICCAI2024-TopCoW PPT.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PengchengShi1220/cbDice/HEAD/MICCAI2024-TopCoW PPT.pdf -------------------------------------------------------------------------------- /README.md: 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