├── .gitignore ├── .ipynb_checkpoints └── main_motion_correction-checkpoint.ipynb ├── LICENSE.md ├── README.md ├── bad_movie ├── exemple1 │ └── parameters.yaml └── exemple2 │ └── parameters.yaml ├── example_movies └── parameters.yaml ├── main_cnmf_e.py ├── main_cnmfe_e.ipynb ├── main_motion_correction.ipynb ├── main_test_hd_generated.ipynb ├── main_test_hd_generated.py ├── main_test_motion_correction.py ├── miniscopy ├── __init__.py ├── base │ ├── __init__.py │ ├── motion_correction.py │ ├── movies.py │ ├── sima_functions.py │ ├── traces.py │ └── utilities.py ├── clusters │ ├── __init__.py │ └── cluster.py └── cnmf_e │ ├── __init__.py │ ├── cnmfe.py │ ├── deconvolution.py │ ├── initialization.py │ ├── oasis.pyx │ ├── pre_processing.py │ ├── spatial.py │ ├── temporal.py │ └── utilities.py ├── setup.py └── testbench ├── test_import_packages.py ├── test_numpy_deadlock_mp.py └── test_numpy_deadlock_sp.py /.gitignore: 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