├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ ├── pr-commands.yaml │ └── test-coverage.yaml ├── .gitignore ├── CRAN-SUBMISSION ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── PointedSDMs.Rproj ├── R ├── assignCovariate.R ├── blockedCV.R ├── bruSDM_outputs.R ├── bruSDM_predict.R ├── changeCoords.R ├── checkCoords.R ├── checkVar.R ├── data.BBSColinusVirginianus.R ├── data.Koala.R ├── data.SetophagaData.rda.R ├── data.SolitaryTinamou.rda.R ├── data2ENV.R ├── dataOrganize.R ├── dataSet.R ├── datasetOLD.R ├── datasetOut.R ├── fitISDM.R ├── intModel.R ├── makeFormulaComps.R ├── makeLhoods.R ├── makeMarks.R ├── modISDM_predict.R ├── modMarks_predict.R ├── modSpecies_predict.R ├── modelOutputs.R ├── nameChanger.R ├── nearestValue.R ├── reduceComps.R ├── removeFormula.R ├── runModel.R ├── specifyISDM.R ├── specifyMarks.R ├── specifySpecies.R ├── startISDM.R ├── startMarks.R └── startSpecies.R ├── README.Rmd ├── README.md ├── codecov.yml ├── cran-comments.md ├── data-raw ├── BBSColinusVirginianus.R ├── SetophagaData.R └── Solitary_tinamou.R ├── data ├── BBSColinusVirginianus.rda ├── Koala.rda ├── SetophagaData.rda └── SolitaryTinamou.rda ├── inst ├── CITATION ├── References.bib └── extdata │ ├── SetophagaCovariates.tif │ └── SolitaryTinamouCovariates.tif ├── man ├── BBA.Rd ├── BBS.Rd ├── BBSColinusVirginianus.Rd ├── Gbif.Rd ├── Koala.Rd ├── NLCD_canopy_raster.Rd ├── Parks.Rd ├── SetophagaData.Rd ├── SolTinCovariates.Rd ├── SolitaryTinamou.Rd ├── blockedCV-class.Rd ├── blockedCV.Rd ├── blockedCVpred-class.Rd ├── bruSDM-class.Rd ├── bruSDM_predict-class.Rd ├── changeCoords.Rd ├── checkCoords.Rd ├── checkVar.Rd ├── data2ENV.Rd ├── dataOrganize.Rd ├── dataSet.Rd ├── datasetOut-class.Rd ├── datasetOut.Rd ├── eBird.Rd ├── elev_raster.Rd ├── figures │ ├── README-plot-1.png │ └── README-predict_and_plot-1.png ├── fitISDM.Rd ├── intModel.Rd ├── makeFormulaComps.Rd ├── makeLhoods.Rd ├── modISDM-class.Rd ├── modISDM_predict-class.Rd ├── modMarks-class.Rd ├── modMarks_predict-class.Rd ├── modSpecies-class.Rd ├── modSpecies_predict-class.Rd ├── nameChanger.Rd ├── nearestValue.Rd ├── plot.Rd ├── predict.Rd ├── print.blockedCV.Rd ├── print.blockedCVpred.Rd ├── print.bruSDM.Rd ├── print.bruSDM_predict.Rd ├── print.datasetOut.Rd ├── print.modISDM.Rd ├── print.modMarks.Rd ├── print.modSpecies.Rd ├── reduceComps.Rd ├── region.Rd ├── removeFormula.Rd ├── runModel.Rd ├── specifyISDM.Rd ├── specifyMarks.Rd ├── specifySpecies.Rd ├── startISDM.Rd ├── startMarks.Rd ├── startSpecies.Rd └── summary.Rd ├── tests ├── testthat.R └── testthat │ ├── .gitignore │ ├── setup.R │ ├── testthat_assignCovariate.R │ ├── testthat_blockedCV.R │ ├── testthat_changeCoords.R │ ├── testthat_checkCoords.R │ ├── testthat_checkVar.R │ ├── testthat_dataOrganize.R │ ├── testthat_dataSet.R │ ├── testthat_datasetOut.R │ ├── testthat_fitISDM.R │ ├── testthat_intModel.R │ ├── testthat_makeFormulaComps.R │ ├── testthat_makeLhoods.R │ ├── 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