├── Files_to_process.txt ├── LICENSE ├── Parameters.txt ├── QC_report.pdf ├── README.md ├── Viral_Track_cell_demultiplexing.R ├── Viral_Track_scanning.R ├── Viral_Track_transcript_assembly.R └── Virusite_annotation_file.txt /Files_to_process.txt: -------------------------------------------------------------------------------- 1 | /home/pbost/Desktop/Viral_Track/Data_COVID/C147_S1_L001_R2_001.fastq.gz 2 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/LICENSE -------------------------------------------------------------------------------- /Parameters.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/Parameters.txt -------------------------------------------------------------------------------- /QC_report.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/QC_report.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/README.md -------------------------------------------------------------------------------- /Viral_Track_cell_demultiplexing.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/Viral_Track_cell_demultiplexing.R -------------------------------------------------------------------------------- /Viral_Track_scanning.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/Viral_Track_scanning.R -------------------------------------------------------------------------------- /Viral_Track_transcript_assembly.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/Viral_Track_transcript_assembly.R -------------------------------------------------------------------------------- /Virusite_annotation_file.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PierreBSC/Viral-Track/HEAD/Virusite_annotation_file.txt --------------------------------------------------------------------------------