├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── CRAN-SUBMISSION ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── bootstrap_traits.R ├── bootstrap_traits_multivariate.R ├── bootstrap_traits_parametric.R ├── cor_to_df.R ├── coverage_plot.R ├── data.R ├── distribution_handler.R ├── fortify_filled_trait.R ├── get_ci.R ├── get_dist_parms.R ├── quiet.R ├── summarise_bootstrap_moments.R ├── trait_checks.R ├── trait_fill.R ├── trait_fill_multi_level.R ├── trait_fit_distributions.R └── trait_missing.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── data-raw ├── DATASET.R ├── community.RData └── trait.RData ├── data ├── community.rda └── trait.rda ├── docs ├── 404.html ├── LICENSE-text.html ├── LICENSE.html ├── articles │ ├── comm-boot.png │ ├── index.html │ ├── traitstrap-workflow.html │ ├── traitstrap-workflow_files │ │ └── figure-html │ │ │ ├── coverage-plot-1.png │ │ │ ├── multivariate-plot-1.png │ │ │ ├── multivariate-tpd-1.png │ │ │ └── plot-raw-dist-np-1.png │ └── true-dist.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── Rplot001.png │ ├── autoplot.filled_trait-1.png │ ├── autoplot.filled_trait.html │ ├── community.html │ ├── cor_to_df.html │ ├── distribution_handler.html │ ├── figures │ │ └── Traitstrap_hex.png │ ├── fortify_filled_trait.html │ ├── get_ci.html │ ├── get_dist_parms.html │ ├── index.html │ ├── quiet.html │ ├── trait.html │ ├── trait_fill.html │ ├── trait_fit_distributions.html │ ├── trait_missing.html │ ├── trait_multivariate_bootstrap-1.png │ ├── trait_multivariate_bootstrap.html │ ├── trait_np_bootstrap.html │ ├── trait_parametric_bootstrap.html │ └── trait_summarise_boot_moments.html └── sitemap.xml ├── man ├── autoplot.filled_trait.Rd ├── community.Rd ├── cor_to_df.Rd ├── distribution_handler.Rd ├── figures │ └── Traitstrap_hex.png ├── fortify_filled_trait.Rd ├── get_ci.Rd ├── get_dist_parms.Rd ├── quiet.Rd ├── trait.Rd ├── trait_fill.Rd ├── trait_fit_distributions.Rd ├── trait_missing.Rd ├── trait_multivariate_bootstrap.Rd ├── trait_np_bootstrap.Rd ├── trait_parametric_bootstrap.Rd └── trait_summarise_boot_moments.Rd ├── tests ├── testthat.R └── testthat │ ├── test-Min_n_leaves.R │ ├── test-distribution_handler.R │ ├── test-get_ci.R │ ├── test-get_dist_parms.R │ ├── test-trait_fill-taxon.R │ ├── test-trait_fill-treatment.R │ ├── test-trait_fill.R │ ├── test-trait_fit_distributions.R │ └── test-trait_parametric_bootstrapping.R ├── traitstrap.Rproj └── vignettes ├── .gitignore ├── comm-boot.png ├── traitstrap-workflow.Rmd └── true-dist.png /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Plant-Functional-Trait-Course/traitstrap/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Plant-Functional-Trait-Course/traitstrap/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Plant-Functional-Trait-Course/traitstrap/HEAD/.gitignore -------------------------------------------------------------------------------- /CRAN-SUBMISSION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Plant-Functional-Trait-Course/traitstrap/HEAD/CRAN-SUBMISSION -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Plant-Functional-Trait-Course/traitstrap/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | YEAR: 2020 2 | COPYRIGHT HOLDER: Richard J. 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