├── .gitattributes ├── .github └── workflows │ └── publish-to-pypi.yml ├── .gitignore ├── .readthedocs.yaml ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.rst ├── dendrify ├── __init__.py ├── compartment.py ├── ephysproperties.py ├── equations.py ├── neuronmodel.py ├── playground.py ├── tests │ └── simple_test.py ├── utils.py └── version.py ├── docs_sphinx ├── Makefile ├── examples_to_rst.py ├── make.bat └── source │ ├── _static │ ├── Fig2.png │ ├── Fig3.png │ ├── custom-nbsphinx.css │ ├── dendrify_logo_dark.png │ ├── dendrify_logo_light.png │ ├── intro.png │ ├── intro_dark.png │ └── under-construction.png │ ├── api │ ├── classes.rst │ ├── compartment.rst │ ├── dendrite.rst │ ├── ephys.rst │ ├── models.rst │ ├── neuronmodel.rst │ ├── playground.rst │ ├── pointneuronmodel.rst │ └── soma.rst │ ├── changelog.rst │ ├── code_of_conduct.rst │ ├── conf.py │ ├── examples │ ├── _static │ │ ├── comp_amplification.png │ │ ├── comp_backprop.png │ │ ├── comp_network.png │ │ ├── comp_passive_vs_active.png │ │ ├── comp_understanding.png │ │ ├── playground.png │ │ ├── point_adaptation.png │ │ ├── point_adex.png │ │ ├── point_adex_noise.png │ │ ├── point_adex_synapses.png │ │ ├── point_lif_inhibition.png │ │ ├── syn_ampa.png │ │ ├── syn_gaba.png │ │ ├── syn_nmda.png │ │ ├── val_dendritic_attenuation.png │ │ ├── val_dendritic_io.png │ │ ├── val_fi_curve.png │ │ ├── val_rinput.png │ │ └── val_tau.png │ ├── comp_amplification.rst │ ├── comp_backprop.rst │ ├── comp_network.rst │ ├── comp_understanding.rst │ ├── compartmental.rst │ ├── playground.rst │ ├── point.rst │ ├── point_adaptation.rst │ ├── point_adex.rst │ ├── point_adex_noise.rst │ ├── point_adex_synapses.rst │ ├── point_lif_inhibition.rst │ ├── syn_ampa.rst │ ├── syn_gaba.rst │ ├── syn_nmda.rst │ ├── synapses.rst │ ├── val_dendritic_attenuation.rst │ ├── val_dendritic_io.rst │ ├── val_fi_curve.rst │ ├── val_rinput.rst │ ├── val_tau.rst │ └── validation.rst │ ├── genindex.rst │ ├── index.rst │ ├── installation.rst │ ├── known_issues.rst │ ├── papers.rst │ ├── requirements_docs.txt │ ├── support.rst │ └── tutorials │ ├── Dendrify_101.ipynb │ ├── Dendrify_custom_models.ipynb │ └── Dendrify_simulations.ipynb ├── examples_new ├── comp_amplification.py ├── comp_backprop.py ├── comp_network.py ├── comp_understanding.py ├── point_adaptation.py ├── point_adex.py ├── point_adex_noise.py ├── point_adex_synapses.py ├── point_lif_inhibition.py ├── syn_ampa.py ├── syn_gaba.py ├── syn_nmda.py ├── val_dendritic_attenuation.py ├── val_dendritic_io.py ├── val_fi_curve.py ├── val_rinput.py └── val_tau.py ├── paper_figures ├── Fig2_notebook.ipynb ├── Fig3_notebook.ipynb ├── Fig4_notebook.ipynb ├── Fig5_notebook.ipynb ├── benchmarks │ ├── group_active_dendrites.ipynb │ ├── group_passive_dendrites.ipynb │ └── network_active_dendrites.ipynb ├── graphics │ ├── 1.png │ ├── 2.png │ ├── ca1_coincidence.png │ └── ca1_model.png └── other │ ├── Cell_1.csv │ ├── Cell_2.csv │ ├── Cell_3.csv │ ├── M18_dv.csv │ 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