├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── config ├── config.yaml ├── dataset │ └── binary_mnist.yaml ├── loader │ └── basic.yaml ├── model │ ├── vae.yaml │ ├── vae_vamp.yaml │ └── vae_vamp_hsnf.yaml └── worker │ └── vae_worker.yaml ├── evaluate_vae.py ├── popgen ├── __init__.py ├── datasets │ ├── __init__.py │ └── binary_mnist.py ├── distributions │ ├── __init__.py │ ├── gaussian.py │ └── log_gauss_mix.py ├── models │ ├── __init__.py │ └── vae.py ├── nn │ ├── __init__.py │ ├── causal_conv │ │ ├── __init__.py │ │ └── causal_conv1d.py │ ├── cosine_centroid_loss.py │ ├── cpc │ │ ├── __init__.py │ │ └── prediction_model.py │ ├── flows │ │ ├── __init__.py │ │ └── hsnf.py │ ├── mlp │ │ ├── __init__.py │ │ ├── mlp_decoder.py │ │ └── mlp_encoder.py │ ├── vamp_prior.py │ └── vqvae │ │ ├── __init__.py │ │ ├── codebook_ema.py │ │ ├── jitter.py │ │ └── vq_embedder.py ├── optim │ ├── __init__.py │ ├── ema.py │ └── geco.py ├── setup │ ├── __init__.py │ ├── setup_config.py │ ├── setup_loaders.py │ ├── setup_worker.py │ └── utils.py ├── utils │ ├── __init__.py │ └── sigmoid_annealing.py └── workers │ ├── __init__.py │ ├── abstract_worker.py │ └── vae_worker.py ├── pyproject.toml ├── requirements.txt ├── setup.py └── train.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Popgun-Labs/PopGen/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Popgun-Labs/PopGen/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Popgun-Labs/PopGen/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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