├── QC ├── PCA_SexGeneHeatmap.R └── gender_genes.txt ├── README.md ├── WGCNA ├── inputDataExpession.R ├── inputDataModules.R ├── modulePreservation.R ├── moduleRobustnessByResampling ├── runWGCNA.R └── wgcna_clusters.txt └── deconvolution ├── CIBERSORT.Output_Abs_LM22.RData └── summaryCIBERSORT.R /QC/PCA_SexGeneHeatmap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/QC/PCA_SexGeneHeatmap.R -------------------------------------------------------------------------------- /QC/gender_genes.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/QC/gender_genes.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/README.md -------------------------------------------------------------------------------- /WGCNA/inputDataExpession.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/inputDataExpession.R -------------------------------------------------------------------------------- /WGCNA/inputDataModules.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/inputDataModules.R -------------------------------------------------------------------------------- /WGCNA/modulePreservation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/modulePreservation.R -------------------------------------------------------------------------------- /WGCNA/moduleRobustnessByResampling: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/moduleRobustnessByResampling -------------------------------------------------------------------------------- /WGCNA/runWGCNA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/runWGCNA.R -------------------------------------------------------------------------------- /WGCNA/wgcna_clusters.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/WGCNA/wgcna_clusters.txt -------------------------------------------------------------------------------- /deconvolution/CIBERSORT.Output_Abs_LM22.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/deconvolution/CIBERSORT.Output_Abs_LM22.RData -------------------------------------------------------------------------------- /deconvolution/summaryCIBERSORT.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Precancer/SCC/HEAD/deconvolution/summaryCIBERSORT.R --------------------------------------------------------------------------------