├── .dockerignore ├── .gitattributes ├── .gitignore ├── .pre-commit-config.yaml ├── Dockerfile ├── LICENSE-CODE ├── README.md ├── examples ├── generations │ ├── generate.sh │ └── prompts.csv └── protein_gym_zero_shot │ ├── csv_to_fasta.py │ ├── download_and_prepare.sh │ ├── run.sh │ └── score.py ├── mypy.ini ├── pixi.lock ├── pyproject.toml ├── setup.sh └── src └── progen3 ├── __init__.py ├── batch_preparer.py ├── common ├── __init__.py ├── dist.py └── model_loading.py ├── config.py ├── generator.py ├── model ├── __init__.py ├── attention.py ├── mb_wrapper.py └── moe.py ├── modeling.py ├── scorer.py ├── tokenizer.json ├── tokenizer.py └── tools ├── .gitignore ├── __init__.py ├── generate.py ├── score.py └── utils.py /.dockerignore: -------------------------------------------------------------------------------- 1 | .vscode 2 | .git 3 | **/.pixi 4 | -------------------------------------------------------------------------------- /.gitattributes: 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