├── .gitignore ├── LICENSE ├── MotifSeq.py ├── README.md ├── SquiggleKit.py ├── SquigglePlot.py ├── SquigglePull.py ├── archive └── fast5_fetcher.py ├── batch_tater.py ├── dRNA_segmenter.py ├── example ├── CATCTATCCAGGGTTAAATT.fa ├── CATCTATCCAGGGTTAAATT.model ├── R2_152.index ├── example_fast5s.tar ├── filtered_R2_151.paf ├── slow5 │ └── 0.blow5 ├── test.fast5 ├── test.fastq ├── test_full.paf └── test_seq_sum.txt ├── fast5_fetcher_multi.py ├── flask_session ├── 2029240f6d1128be89ddc32729463129 └── bc16678ac489c2bdc5f861bf0a538a1c ├── img ├── MotifSeq_fig.jpg ├── b1df4e2e-1212-43ee-83e3-feffe20389e8.png └── kitpic.png ├── main.py ├── segmenter.py ├── templates ├── embed.html ├── error.html ├── exception.html ├── home.html ├── loading.html ├── results.html └── view_graphs.html └── theme.yaml /.gitignore: -------------------------------------------------------------------------------- 1 | sklearn.preprocessing 2 | *.blow5.idx 3 | __pycache__ 4 | 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