├── .github └── workflows │ └── release.yml ├── .gitignore ├── .vscode └── settings.json ├── Dockerfile ├── LICENSE ├── README.md ├── config.init ├── docs ├── custom_1.jpg ├── homepage.svg ├── index.md ├── installation.md ├── params.svg ├── primers.md ├── snakeballing.md ├── troubleshooting.md └── usage.md ├── main.py ├── mkdocs.yml ├── primer-schemes ├── artic │ ├── IturiEBOV │ │ └── V1 │ │ │ ├── IturiEBOV.log │ │ │ ├── IturiEBOV.pdf │ │ │ ├── IturiEBOV.pickle │ │ │ ├── IturiEBOV.reference.fasta │ │ │ ├── IturiEBOV.reference.fasta.amb │ │ │ ├── IturiEBOV.reference.fasta.ann │ │ │ ├── IturiEBOV.reference.fasta.bwt │ │ │ ├── IturiEBOV.reference.fasta.fai │ │ │ ├── IturiEBOV.reference.fasta.pac │ │ │ ├── IturiEBOV.reference.fasta.sa │ │ │ ├── IturiEBOV.scheme.bed │ │ │ ├── IturiEBOV.svg │ │ │ └── IturiEBOV.tsv │ └── nCoV-2019 │ │ ├── V1 │ │ ├── nCoV-2019.bed │ │ ├── nCoV-2019.genes.bed │ │ ├── nCoV-2019.insert.bed │ │ ├── nCoV-2019.primer.bed │ │ ├── nCoV-2019.reference.fasta │ │ ├── nCoV-2019.scheme.bed │ │ └── nCoV-2019.tsv │ │ ├── V2 │ │ ├── nCoV-2019.bed │ │ ├── nCoV-2019.genes.bed │ │ ├── nCoV-2019.insert.bed │ │ ├── nCoV-2019.primer.bed │ │ ├── nCoV-2019.reference.fasta │ │ ├── nCoV-2019.scheme.bed │ │ └── nCoV-2019.tsv │ │ ├── V3 │ │ ├── nCoV-2019.bed │ │ ├── nCoV-2019.genes.bed │ │ ├── nCoV-2019.insert.bed │ │ ├── nCoV-2019.primer.bed │ │ ├── nCoV-2019.reference.fasta │ │ ├── nCoV-2019.scheme.bed │ │ └── nCoV-2019.tsv │ │ └── V4 │ │ ├── README │ │ ├── SARS-CoV-2.design.fasta │ │ ├── SARS-CoV-2.insert.bed │ │ ├── SARS-CoV-2.primer.bed │ │ ├── SARS-CoV-2.reference.fasta │ │ ├── SARS-CoV-2.scheme.bed │ │ ├── nCoV-2019.genes.bed │ │ ├── nCoV-2019.reference.fasta │ │ └── nCoV-2019.scheme.bed ├── eden │ └── nCoV-2019 │ │ └── V1 │ │ ├── nCoV-2019.genes.bed │ │ ├── nCoV-2019.reference.fasta │ │ ├── nCoV-2019.reference.fasta.fai │ │ └── nCoV-2019.scheme.bed └── midnight │ └── nCoV-2019 │ └── V1 │ ├── nCoV-2019.bed │ ├── nCoV-2019.genes.bed │ ├── nCoV-2019.reference.fasta │ ├── nCoV-2019.reference.fasta.fai │ └── nCoV-2019.scheme.bed ├── run-dev.sh ├── run-redis.sh ├── run.sh ├── run_mac.sh ├── scripts └── covarPlots.py ├── src ├── .DS_Store ├── job.py ├── queue.py ├── system.py └── tasks.py ├── static ├── css │ ├── bulma-rtl.css │ ├── bulma-rtl.css.map │ ├── bulma-rtl.min.css │ ├── bulma.css │ ├── bulma.css.map │ ├── bulma.min.css │ ├── confirm_modal.css │ └── page_template.css ├── icon.png ├── icon2.png ├── logo.png └── site │ ├── 404.html │ ├── css │ ├── base.css │ ├── bootstrap.min.css │ └── font-awesome.min.css │ ├── custom_1.jpg │ ├── fonts │ ├── fontawesome-webfont.eot │ ├── fontawesome-webfont.svg │ ├── fontawesome-webfont.ttf │ ├── fontawesome-webfont.woff │ └── fontawesome-webfont.woff2 │ ├── homepage.svg │ ├── img │ ├── favicon.ico │ └── grid.png │ ├── index.html │ ├── installation.html │ ├── js │ ├── base.js │ ├── bootstrap.min.js │ └── jquery-1.10.2.min.js │ ├── params.svg │ ├── primers.html │ ├── sitemap.xml │ ├── sitemap.xml.gz │ ├── snakeballing.html │ ├── troubleshooting.html │ └── usage.html ├── templates ├── about.html ├── home.html ├── output.html ├── page_template.html ├── parameters.html └── progress.html └── test ├── Dockerfile_archlinux ├── Dockerfile_fedora ├── Dockerfile_gentoo ├── Dockerfile_opensuse └── update.sh /.github/workflows/release.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Psy-Fer/interARTIC/HEAD/.github/workflows/release.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Psy-Fer/interARTIC/HEAD/.gitignore -------------------------------------------------------------------------------- /.vscode/settings.json: -------------------------------------------------------------------------------- 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