├── 00-data ├── .gitignore └── example_list_chromosome.txt ├── 01-info_file └── example_list_chromo ├── 02-scripts ├── 00.extract_data_bcftools.sh ├── 01.split_dataset.py ├── 02.interval_iteration.sh ├── 03.rhomap_iteration.sh ├── 04.compress.sh ├── 05.summarise.output.sh ├── 06.run_slidingwindows.sh ├── colosse_jobs │ ├── 04.interval_parallel_NC_arg.sh │ ├── compress.sh │ └── generate_colosse_script.sh ├── complete │ ├── 00.run_commplete.parallel.sh │ └── 01.complete.sh ├── deprecated │ ├── 00.extract_data.sh │ └── 00.extract_data_v2.sh ├── graham_cedar │ ├── 04.interval_parallel_NC_arg.sh │ └── 05.rhomap_parallel_NC_arg.sh ├── single_dataset_by_chromo │ ├── 03.interaval_parallel_NC_arg_v1.sh │ └── 03.interval_iteration.sh └── utility_scripts │ ├── 00.extract_pop.sh │ └── sliding_window.py └── Readme.md /00-data/.gitignore: -------------------------------------------------------------------------------- 1 | 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