├── .github ├── ISSUE_TEMPLATE │ └── bug_report.md └── workflows │ └── build.yml ├── CMakeLists.txt ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R └── build.R ├── README.md ├── _pkgdown.yml ├── cleanup ├── cleanup.win ├── configure ├── configure.ac ├── configure.win ├── cytolibConfig.h.in ├── docs ├── 404.html ├── LICENSE-text.html ├── articles │ ├── cytolib.html │ └── index.html ├── authors.html ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── cytolib_LdFlags.html │ └── index.html ├── getverion.sh ├── inst ├── CMakeLists.txt ├── include │ └── cytolib │ │ ├── CytoFrame.hpp │ │ ├── CytoFrameView.hpp │ │ ├── CytoVFS.hpp │ │ ├── GatingHierarchy.hpp │ │ ├── GatingSet.hpp │ │ ├── H5CytoFrame.hpp │ │ ├── MemCytoFrame.hpp │ │ ├── POPINDICES.hpp │ │ ├── README │ │ ├── armadillo │ │ ├── armadillo_bits │ │ ├── BaseCube_bones.hpp │ │ ├── BaseCube_meat.hpp │ │ ├── Base_bones.hpp │ │ ├── Base_meat.hpp │ │ ├── Col_bones.hpp │ │ ├── Col_meat.hpp │ │ ├── CubeToMatOp_bones.hpp │ │ ├── CubeToMatOp_meat.hpp │ │ ├── Cube_bones.hpp │ │ ├── Cube_meat.hpp │ │ ├── GenCube_bones.hpp │ │ ├── GenCube_meat.hpp │ │ ├── GenSpecialiser.hpp │ │ ├── Gen_bones.hpp │ │ ├── Gen_meat.hpp │ │ ├── GlueCube_bones.hpp │ │ ├── GlueCube_meat.hpp │ │ ├── Glue_bones.hpp │ │ ├── Glue_meat.hpp │ │ ├── MapMat_bones.hpp │ │ ├── MapMat_meat.hpp │ │ ├── Mat_bones.hpp │ │ ├── Mat_meat.hpp │ │ ├── OpCube_bones.hpp │ │ ├── OpCube_meat.hpp │ │ ├── Op_bones.hpp │ │ ├── Op_meat.hpp │ │ ├── Proxy.hpp │ │ ├── ProxyCube.hpp │ │ ├── Row_bones.hpp │ │ ├── Row_meat.hpp │ │ ├── SizeCube_bones.hpp │ │ ├── SizeCube_meat.hpp │ │ ├── SizeMat_bones.hpp │ │ ├── SizeMat_meat.hpp │ │ ├── SpBase_bones.hpp │ │ ├── SpBase_meat.hpp │ │ ├── SpCol_bones.hpp │ │ ├── SpCol_meat.hpp │ │ ├── SpGlue_bones.hpp │ │ ├── SpGlue_meat.hpp │ │ ├── SpMat_bones.hpp │ │ ├── SpMat_iterators_meat.hpp │ │ ├── SpMat_meat.hpp │ │ ├── SpOp_bones.hpp │ │ ├── SpOp_meat.hpp │ │ ├── SpProxy.hpp │ │ ├── SpRow_bones.hpp │ │ ├── SpRow_meat.hpp │ │ ├── SpSubview_bones.hpp │ │ ├── SpSubview_col_list_bones.hpp │ │ ├── SpSubview_col_list_meat.hpp │ │ ├── SpSubview_iterators_meat.hpp │ │ ├── SpSubview_meat.hpp │ │ ├── SpToDOp_bones.hpp │ │ ├── SpToDOp_meat.hpp │ │ ├── SpValProxy_bones.hpp │ │ ├── SpValProxy_meat.hpp │ │ ├── access.hpp │ │ ├── arma_cmath.hpp │ │ ├── arma_config.hpp │ │ ├── arma_forward.hpp │ │ ├── arma_ostream_bones.hpp │ │ ├── arma_ostream_meat.hpp │ │ ├── arma_rel_comparators.hpp │ │ ├── arma_rng.hpp │ │ ├── arma_rng_cxx11.hpp │ │ ├── arma_rng_cxx98.hpp │ │ ├── arma_static_check.hpp │ │ ├── arma_str.hpp │ │ ├── arma_version.hpp │ │ ├── arrayops_bones.hpp │ │ ├── arrayops_meat.hpp │ │ ├── auxlib_bones.hpp │ │ ├── auxlib_meat.hpp │ │ ├── band_helper.hpp │ │ ├── compiler_check.hpp │ │ ├── compiler_setup.hpp │ │ ├── compiler_setup_post.hpp │ │ ├── cond_rel_bones.hpp │ │ ├── cond_rel_meat.hpp │ │ ├── config.hpp │ │ ├── constants.hpp │ │ ├── constants_old.hpp │ │ ├── csv_name.hpp │ │ ├── debug.hpp │ │ ├── def_arpack.hpp │ │ ├── def_atlas.hpp │ │ ├── def_blas.hpp │ │ ├── def_hdf5.hpp │ │ ├── def_lapack.hpp │ │ ├── def_superlu.hpp │ │ ├── diagmat_proxy.hpp │ │ ├── diagview_bones.hpp │ │ ├── diagview_meat.hpp │ │ ├── diskio_bones.hpp │ │ ├── diskio_meat.hpp │ │ ├── distr_param.hpp │ │ ├── eGlueCube_bones.hpp │ │ ├── eGlueCube_meat.hpp │ │ ├── eGlue_bones.hpp │ │ ├── eGlue_meat.hpp │ │ ├── eOpCube_bones.hpp │ │ ├── eOpCube_meat.hpp │ │ ├── eOp_bones.hpp │ │ ├── eOp_meat.hpp │ │ ├── eglue_core_bones.hpp │ │ ├── eglue_core_meat.hpp │ │ ├── eop_aux.hpp │ │ ├── eop_core_bones.hpp │ │ ├── eop_core_meat.hpp │ │ ├── fft_engine.hpp │ │ ├── field_bones.hpp │ │ ├── field_meat.hpp │ │ ├── fn_accu.hpp │ │ ├── fn_all.hpp │ │ ├── fn_any.hpp │ │ ├── fn_approx_equal.hpp │ │ ├── fn_as_scalar.hpp │ │ ├── fn_chi2rnd.hpp │ │ ├── fn_chol.hpp │ │ ├── fn_clamp.hpp │ │ ├── fn_cond.hpp │ │ ├── fn_conv.hpp │ │ ├── fn_conv_to.hpp │ │ ├── fn_cor.hpp │ │ ├── fn_cov.hpp │ │ ├── fn_cross.hpp │ │ ├── fn_cumprod.hpp │ │ ├── fn_cumsum.hpp │ │ ├── fn_det.hpp │ │ ├── fn_diagmat.hpp │ │ ├── fn_diagvec.hpp │ │ ├── fn_diff.hpp │ │ ├── fn_dot.hpp │ │ ├── fn_eig_gen.hpp │ │ ├── fn_eig_pair.hpp │ │ ├── fn_eig_sym.hpp │ │ ├── fn_eigs_gen.hpp │ │ ├── fn_eigs_sym.hpp │ │ ├── fn_elem.hpp │ │ ├── fn_eps.hpp │ │ ├── fn_expmat.hpp │ │ ├── fn_eye.hpp │ │ ├── fn_fft.hpp │ │ ├── fn_fft2.hpp │ │ ├── fn_find.hpp │ │ ├── fn_find_unique.hpp │ │ ├── fn_flip.hpp │ │ ├── fn_hess.hpp │ │ ├── fn_hist.hpp │ │ ├── fn_histc.hpp │ │ ├── fn_index_max.hpp │ │ ├── fn_index_min.hpp │ │ ├── fn_inplace_strans.hpp │ │ ├── fn_inplace_trans.hpp │ │ ├── fn_interp1.hpp │ │ ├── fn_interp2.hpp │ │ ├── fn_intersect.hpp │ │ ├── fn_inv.hpp │ │ ├── fn_join.hpp │ │ ├── fn_kmeans.hpp │ │ ├── fn_kron.hpp │ │ ├── fn_log_det.hpp │ │ ├── fn_log_normpdf.hpp │ │ ├── fn_logmat.hpp │ │ ├── fn_lu.hpp │ │ ├── fn_max.hpp │ │ ├── fn_mean.hpp │ │ ├── fn_median.hpp │ │ ├── fn_min.hpp │ │ ├── fn_misc.hpp │ │ ├── fn_mvnrnd.hpp │ │ ├── fn_n_unique.hpp │ │ ├── fn_nonzeros.hpp │ │ ├── fn_norm.hpp │ │ ├── fn_normalise.hpp │ │ ├── fn_normcdf.hpp │ │ ├── fn_normpdf.hpp │ │ ├── fn_numel.hpp │ │ ├── fn_ones.hpp │ │ ├── fn_orth_null.hpp │ │ ├── fn_pinv.hpp │ │ ├── fn_polyfit.hpp │ │ ├── fn_polyval.hpp │ │ ├── fn_powmat.hpp │ │ ├── fn_princomp.hpp │ │ ├── fn_prod.hpp │ │ ├── fn_qr.hpp │ │ ├── fn_quantile.hpp │ │ ├── fn_qz.hpp │ │ ├── fn_randg.hpp │ │ ├── fn_randi.hpp │ │ ├── fn_randn.hpp │ │ ├── fn_randperm.hpp │ │ ├── fn_randu.hpp │ │ ├── fn_range.hpp │ │ ├── fn_rank.hpp │ │ ├── fn_regspace.hpp │ │ ├── fn_repelem.hpp │ │ ├── fn_repmat.hpp │ │ ├── fn_reshape.hpp │ │ ├── fn_resize.hpp │ │ ├── fn_reverse.hpp │ │ ├── fn_roots.hpp │ │ ├── fn_schur.hpp │ │ ├── fn_shift.hpp │ │ ├── fn_shuffle.hpp │ │ ├── fn_size.hpp │ │ ├── fn_solve.hpp │ │ ├── fn_sort.hpp │ │ ├── fn_sort_index.hpp │ │ ├── fn_speye.hpp │ │ ├── fn_spones.hpp │ │ ├── fn_sprandn.hpp │ │ ├── fn_sprandu.hpp │ │ ├── fn_spsolve.hpp │ │ ├── fn_sqrtmat.hpp │ │ ├── fn_stddev.hpp │ │ ├── fn_strans.hpp │ │ ├── fn_sum.hpp │ │ ├── fn_svd.hpp │ │ ├── fn_svds.hpp │ │ ├── fn_syl_lyap.hpp │ │ ├── fn_symmat.hpp │ │ ├── fn_toeplitz.hpp │ │ ├── fn_trace.hpp │ │ ├── fn_trans.hpp │ │ ├── fn_trapz.hpp │ │ ├── fn_trig.hpp │ │ ├── fn_trimat.hpp │ │ ├── fn_trimat_ind.hpp │ │ ├── fn_trunc_exp.hpp │ │ ├── fn_trunc_log.hpp │ │ ├── fn_unique.hpp │ │ ├── fn_var.hpp │ │ ├── fn_vectorise.hpp │ │ ├── fn_wishrnd.hpp │ │ ├── fn_zeros.hpp │ │ ├── glue_affmul_bones.hpp │ │ ├── glue_affmul_meat.hpp │ │ ├── glue_atan2_bones.hpp │ │ ├── glue_atan2_meat.hpp │ │ ├── glue_conv_bones.hpp │ │ ├── glue_conv_meat.hpp │ │ ├── glue_cor_bones.hpp │ │ ├── glue_cor_meat.hpp │ │ ├── glue_cov_bones.hpp │ │ ├── glue_cov_meat.hpp │ │ ├── glue_cross_bones.hpp │ │ ├── glue_cross_meat.hpp │ │ ├── glue_hist_bones.hpp │ │ ├── glue_hist_meat.hpp │ │ ├── glue_histc_bones.hpp │ │ ├── glue_histc_meat.hpp │ │ ├── glue_hypot_bones.hpp │ │ ├── glue_hypot_meat.hpp │ │ ├── glue_intersect_bones.hpp │ │ ├── glue_intersect_meat.hpp │ │ ├── glue_join_bones.hpp │ │ ├── glue_join_meat.hpp │ │ ├── glue_kron_bones.hpp │ │ ├── glue_kron_meat.hpp │ │ ├── glue_max_bones.hpp │ │ ├── glue_max_meat.hpp │ │ ├── glue_min_bones.hpp │ │ ├── glue_min_meat.hpp │ │ ├── glue_mixed_bones.hpp │ │ ├── glue_mixed_meat.hpp │ │ ├── glue_mvnrnd_bones.hpp │ │ ├── glue_mvnrnd_meat.hpp │ │ ├── glue_polyfit_bones.hpp │ │ ├── glue_polyfit_meat.hpp │ │ ├── glue_polyval_bones.hpp │ │ ├── glue_polyval_meat.hpp │ │ ├── glue_quantile_bones.hpp │ │ ├── glue_quantile_meat.hpp │ │ ├── glue_relational_bones.hpp │ │ ├── glue_relational_meat.hpp │ │ ├── glue_solve_bones.hpp │ │ ├── glue_solve_meat.hpp │ │ ├── glue_times_bones.hpp │ │ ├── glue_times_meat.hpp │ │ ├── glue_toeplitz_bones.hpp │ │ ├── glue_toeplitz_meat.hpp │ │ ├── glue_trapz_bones.hpp │ │ ├── glue_trapz_meat.hpp │ │ ├── gmm_diag_bones.hpp │ │ ├── gmm_diag_meat.hpp │ │ ├── gmm_full_bones.hpp │ │ ├── gmm_full_meat.hpp │ │ ├── gmm_misc_bones.hpp │ │ ├── gmm_misc_meat.hpp │ │ ├── hdf5_misc.hpp │ │ ├── hdf5_name.hpp │ │ ├── include_atlas.hpp │ │ ├── include_hdf5.hpp │ │ ├── include_superlu.hpp │ │ ├── injector_bones.hpp │ │ ├── injector_meat.hpp │ │ ├── memory.hpp │ │ ├── mp_misc.hpp │ │ ├── mtGlueCube_bones.hpp │ │ ├── mtGlueCube_meat.hpp │ │ ├── mtGlue_bones.hpp │ │ ├── mtGlue_meat.hpp │ │ ├── mtOpCube_bones.hpp │ │ ├── mtOpCube_meat.hpp │ │ ├── mtOp_bones.hpp │ │ ├── mtOp_meat.hpp │ │ ├── mtSpGlue_bones.hpp │ │ ├── mtSpGlue_meat.hpp │ │ ├── mtSpOp_bones.hpp │ │ ├── mtSpOp_meat.hpp │ │ ├── mul_gemm.hpp │ │ ├── mul_gemm_mixed.hpp │ │ ├── mul_gemv.hpp │ │ ├── mul_herk.hpp │ │ ├── mul_syrk.hpp │ │ ├── newarp_DenseGenMatProd_bones.hpp │ │ ├── newarp_DenseGenMatProd_meat.hpp │ │ ├── newarp_DoubleShiftQR_bones.hpp │ │ ├── newarp_DoubleShiftQR_meat.hpp │ │ ├── newarp_EigsSelect.hpp │ │ ├── newarp_GenEigsSolver_bones.hpp │ │ ├── newarp_GenEigsSolver_meat.hpp │ │ ├── newarp_SortEigenvalue.hpp │ │ ├── newarp_SparseGenMatProd_bones.hpp │ │ ├── newarp_SparseGenMatProd_meat.hpp │ │ ├── newarp_SparseGenRealShiftSolve_bones.hpp │ │ ├── newarp_SparseGenRealShiftSolve_meat.hpp │ │ ├── newarp_SymEigsShiftSolver_bones.hpp │ │ ├── newarp_SymEigsShiftSolver_meat.hpp │ │ ├── newarp_SymEigsSolver_bones.hpp │ │ ├── newarp_SymEigsSolver_meat.hpp │ │ ├── newarp_TridiagEigen_bones.hpp │ │ ├── newarp_TridiagEigen_meat.hpp │ │ ├── newarp_UpperHessenbergEigen_bones.hpp │ │ ├── newarp_UpperHessenbergEigen_meat.hpp │ │ ├── newarp_UpperHessenbergQR_bones.hpp │ │ ├── newarp_UpperHessenbergQR_meat.hpp │ │ ├── newarp_cx_attrib.hpp │ │ ├── op_all_bones.hpp │ │ ├── op_all_meat.hpp │ │ ├── op_any_bones.hpp │ │ ├── op_any_meat.hpp │ │ ├── op_chi2rnd_bones.hpp │ │ ├── op_chi2rnd_meat.hpp │ │ ├── op_chol_bones.hpp │ │ ├── op_chol_meat.hpp │ │ ├── op_clamp_bones.hpp │ │ ├── op_clamp_meat.hpp │ │ ├── op_cond_bones.hpp │ │ ├── op_cond_meat.hpp │ │ ├── op_cor_bones.hpp │ │ ├── op_cor_meat.hpp │ │ ├── op_cov_bones.hpp │ │ ├── op_cov_meat.hpp │ │ ├── op_cumprod_bones.hpp │ │ ├── op_cumprod_meat.hpp │ │ ├── op_cumsum_bones.hpp │ │ ├── op_cumsum_meat.hpp │ │ ├── op_cx_scalar_bones.hpp │ │ ├── op_cx_scalar_meat.hpp │ │ ├── op_diagmat_bones.hpp │ │ ├── op_diagmat_meat.hpp │ │ ├── op_diagvec_bones.hpp │ │ ├── op_diagvec_meat.hpp │ │ ├── op_diff_bones.hpp │ │ ├── op_diff_meat.hpp │ │ ├── op_dot_bones.hpp │ │ ├── op_dot_meat.hpp │ │ ├── op_dotext_bones.hpp │ │ ├── op_dotext_meat.hpp │ │ ├── op_expmat_bones.hpp │ │ ├── op_expmat_meat.hpp │ │ ├── op_fft_bones.hpp │ │ ├── op_fft_meat.hpp │ │ ├── op_find_bones.hpp │ │ ├── op_find_meat.hpp │ │ ├── op_find_unique_bones.hpp │ │ ├── op_find_unique_meat.hpp │ │ ├── op_flip_bones.hpp │ │ ├── op_flip_meat.hpp │ │ ├── op_hist_bones.hpp │ │ ├── op_hist_meat.hpp │ │ ├── op_htrans_bones.hpp │ │ ├── op_htrans_meat.hpp │ │ ├── op_index_max_bones.hpp │ │ ├── op_index_max_meat.hpp │ │ ├── op_index_min_bones.hpp │ │ ├── op_index_min_meat.hpp │ │ ├── op_inv_bones.hpp │ │ ├── op_inv_meat.hpp │ │ ├── op_logmat_bones.hpp │ │ ├── op_logmat_meat.hpp │ │ ├── op_max_bones.hpp │ │ ├── op_max_meat.hpp │ │ ├── op_mean_bones.hpp │ │ ├── op_mean_meat.hpp │ │ ├── op_median_bones.hpp │ │ ├── op_median_meat.hpp │ │ ├── op_min_bones.hpp │ │ ├── op_min_meat.hpp │ │ ├── op_misc_bones.hpp │ │ ├── op_misc_meat.hpp │ │ ├── op_nonzeros_bones.hpp │ │ ├── op_nonzeros_meat.hpp │ │ ├── op_norm_bones.hpp │ │ ├── op_norm_meat.hpp │ │ ├── op_normalise_bones.hpp │ │ ├── op_normalise_meat.hpp │ │ ├── op_orth_null_bones.hpp │ │ ├── op_orth_null_meat.hpp │ │ ├── op_pinv_bones.hpp │ │ ├── op_pinv_meat.hpp │ │ ├── op_powmat_bones.hpp │ │ ├── op_powmat_meat.hpp │ │ ├── op_princomp_bones.hpp │ │ ├── op_princomp_meat.hpp │ │ ├── op_prod_bones.hpp │ │ ├── op_prod_meat.hpp │ │ ├── op_range_bones.hpp │ │ ├── op_range_meat.hpp │ │ ├── op_relational_bones.hpp │ │ ├── op_relational_meat.hpp │ │ ├── op_repelem_bones.hpp │ │ ├── op_repelem_meat.hpp │ │ ├── op_repmat_bones.hpp │ │ ├── op_repmat_meat.hpp │ │ ├── op_reshape_bones.hpp │ │ ├── op_reshape_meat.hpp │ │ ├── op_resize_bones.hpp │ │ ├── op_resize_meat.hpp │ │ ├── op_reverse_bones.hpp │ │ ├── op_reverse_meat.hpp │ │ ├── op_roots_bones.hpp │ │ ├── op_roots_meat.hpp │ │ ├── op_shift_bones.hpp │ │ ├── op_shift_meat.hpp │ │ ├── op_shuffle_bones.hpp │ │ ├── op_shuffle_meat.hpp │ │ ├── op_sort_bones.hpp │ │ ├── op_sort_index_bones.hpp │ │ ├── op_sort_index_meat.hpp │ │ ├── op_sort_meat.hpp │ │ ├── op_sp_minus_bones.hpp │ │ ├── op_sp_minus_meat.hpp │ │ ├── op_sp_plus_bones.hpp │ │ ├── op_sp_plus_meat.hpp │ │ ├── op_sqrtmat_bones.hpp │ │ ├── op_sqrtmat_meat.hpp │ │ ├── op_stddev_bones.hpp │ │ ├── op_stddev_meat.hpp │ │ ├── op_strans_bones.hpp │ │ ├── op_strans_meat.hpp │ │ ├── op_sum_bones.hpp │ │ ├── op_sum_meat.hpp │ │ ├── op_symmat_bones.hpp │ │ ├── op_symmat_meat.hpp │ │ ├── op_toeplitz_bones.hpp │ │ ├── op_toeplitz_meat.hpp │ │ ├── op_trimat_bones.hpp │ │ ├── op_trimat_meat.hpp │ │ ├── op_unique_bones.hpp │ │ ├── op_unique_meat.hpp │ │ ├── op_var_bones.hpp │ │ ├── op_var_meat.hpp │ │ ├── op_vectorise_bones.hpp │ │ ├── op_vectorise_meat.hpp │ │ ├── op_wishrnd_bones.hpp │ │ ├── op_wishrnd_meat.hpp │ │ ├── operator_cube_div.hpp │ │ ├── operator_cube_minus.hpp │ │ ├── operator_cube_plus.hpp │ │ ├── operator_cube_relational.hpp │ │ ├── operator_cube_schur.hpp │ │ ├── operator_cube_times.hpp │ │ ├── operator_div.hpp │ │ ├── operator_minus.hpp │ │ ├── operator_ostream.hpp │ │ ├── operator_plus.hpp │ │ ├── operator_relational.hpp │ │ ├── operator_schur.hpp │ │ ├── operator_times.hpp │ │ ├── podarray_bones.hpp │ │ ├── podarray_meat.hpp │ │ ├── promote_type.hpp │ │ ├── restrictors.hpp │ │ ├── running_stat_bones.hpp │ │ ├── running_stat_meat.hpp │ │ ├── running_stat_vec_bones.hpp │ │ ├── running_stat_vec_meat.hpp │ │ ├── sp_auxlib_bones.hpp │ │ ├── sp_auxlib_meat.hpp │ │ ├── span.hpp │ │ ├── spdiagview_bones.hpp │ │ ├── spdiagview_meat.hpp │ │ ├── spglue_join_bones.hpp │ │ ├── spglue_join_meat.hpp │ │ ├── spglue_kron_bones.hpp │ │ ├── spglue_kron_meat.hpp │ │ ├── spglue_max_bones.hpp │ │ ├── spglue_max_meat.hpp │ │ ├── spglue_merge_bones.hpp │ │ ├── spglue_merge_meat.hpp │ │ ├── spglue_min_bones.hpp │ │ ├── spglue_min_meat.hpp │ │ ├── spglue_minus_bones.hpp │ │ ├── spglue_minus_meat.hpp │ │ ├── spglue_plus_bones.hpp │ │ ├── spglue_plus_meat.hpp │ │ ├── spglue_relational_bones.hpp │ │ ├── spglue_relational_meat.hpp │ │ ├── spglue_schur_bones.hpp │ │ ├── spglue_schur_meat.hpp │ │ ├── spglue_times_bones.hpp │ │ ├── spglue_times_meat.hpp │ │ ├── spop_diagmat_bones.hpp │ │ ├── spop_diagmat_meat.hpp │ │ ├── spop_htrans_bones.hpp │ │ ├── spop_htrans_meat.hpp │ │ ├── spop_max_bones.hpp │ │ ├── spop_max_meat.hpp │ │ ├── spop_mean_bones.hpp │ │ ├── spop_mean_meat.hpp │ │ ├── spop_min_bones.hpp │ │ ├── spop_min_meat.hpp │ │ ├── spop_misc_bones.hpp │ │ ├── spop_misc_meat.hpp │ │ ├── spop_normalise_bones.hpp │ │ ├── spop_normalise_meat.hpp │ │ ├── spop_repmat_bones.hpp │ │ ├── spop_repmat_meat.hpp │ │ ├── spop_reverse_bones.hpp │ │ ├── spop_reverse_meat.hpp │ │ ├── spop_strans_bones.hpp │ │ ├── spop_strans_meat.hpp │ │ ├── spop_sum_bones.hpp │ │ ├── spop_sum_meat.hpp │ │ ├── spop_symmat_bones.hpp │ │ ├── spop_symmat_meat.hpp │ │ ├── spop_trimat_bones.hpp │ │ ├── spop_trimat_meat.hpp │ │ ├── spop_var_bones.hpp │ │ ├── spop_var_meat.hpp │ │ ├── spop_vectorise_bones.hpp │ │ ├── spop_vectorise_meat.hpp │ │ ├── strip.hpp │ │ ├── subview_bones.hpp │ │ ├── subview_cube_bones.hpp │ │ ├── subview_cube_each_bones.hpp │ │ ├── subview_cube_each_meat.hpp │ │ ├── subview_cube_meat.hpp │ │ ├── subview_cube_slices_bones.hpp │ │ ├── subview_cube_slices_meat.hpp │ │ ├── subview_each_bones.hpp │ │ ├── subview_each_meat.hpp │ │ ├── subview_elem1_bones.hpp │ │ ├── subview_elem1_meat.hpp │ │ ├── subview_elem2_bones.hpp │ │ ├── subview_elem2_meat.hpp │ │ ├── subview_field_bones.hpp │ │ ├── subview_field_meat.hpp │ │ ├── subview_meat.hpp │ │ ├── sympd_helper.hpp │ │ ├── traits.hpp │ │ ├── translate_arpack.hpp │ │ ├── translate_atlas.hpp │ │ ├── translate_blas.hpp │ │ ├── translate_lapack.hpp │ │ ├── translate_superlu.hpp │ │ ├── trimat_helper.hpp │ │ ├── typedef_elem.hpp │ │ ├── typedef_elem_check.hpp │ │ ├── typedef_mat.hpp │ │ ├── typedef_mat_fixed.hpp │ │ ├── unwrap.hpp │ │ ├── unwrap_cube.hpp │ │ ├── unwrap_spmat.hpp │ │ ├── upgrade_val.hpp │ │ ├── wall_clock_bones.hpp │ │ ├── wall_clock_meat.hpp │ │ ├── xtrans_mat_bones.hpp │ │ ├── xtrans_mat_meat.hpp │ │ ├── xvec_htrans_bones.hpp │ │ └── xvec_htrans_meat.hpp │ │ ├── calibrationTable.hpp │ │ ├── compensation.hpp │ │ ├── cytolibConfig.h │ │ ├── datatype.hpp │ │ ├── delimitedMessage.hpp │ │ ├── ellipse2points.hpp │ │ ├── gate.hpp │ │ ├── global.hpp │ │ ├── in_polygon.hpp │ │ ├── nodeProperties.hpp │ │ ├── populationTree.hpp │ │ ├── readFCSHeader.hpp │ │ ├── readFCSdata.hpp │ │ ├── spline.hpp │ │ ├── trans_group.hpp │ │ └── transformation.hpp └── utest │ ├── CytoFrame_accessors.cpp │ ├── CytoSet_accessors.cpp │ ├── GatingSet_accessors.cpp │ ├── fixture.hpp │ ├── main.cpp │ └── parseFCS.cpp ├── man └── cytolib_LdFlags.Rd ├── src ├── CMakeLists.txt ├── CytoFrame.cpp ├── CytoFrameView.cpp ├── CytoVFS.cpp ├── GatingHierarchy.cpp ├── GatingSet.cpp ├── H5CytoFrame.cpp ├── Makevars.in ├── Makevars.ucrt ├── Makevars.win ├── MemCytoFrame.cpp ├── POPINDICES.cpp ├── boost │ ├── LICENSE_1_0.txt │ ├── README │ └── libs │ │ ├── filesystem │ │ └── src │ │ │ ├── atomic_ref.hpp │ │ │ ├── atomic_tools.hpp │ │ │ ├── codecvt_error_category.cpp │ │ │ ├── directory.cpp │ │ │ ├── error_handling.hpp │ │ │ ├── exception.cpp │ │ │ ├── operations.cpp │ │ │ ├── path.cpp │ │ │ ├── path_traits.cpp │ │ │ ├── platform_config.hpp │ │ │ ├── portability.cpp │ │ │ ├── posix_tools.hpp │ │ │ ├── private_config.hpp │ │ │ ├── unique_path.cpp │ │ │ ├── utf8_codecvt_facet.cpp │ │ │ ├── windows_file_codecvt.cpp │ │ │ ├── windows_file_codecvt.hpp │ │ │ └── windows_tools.hpp │ │ └── system │ │ └── src │ │ └── error_code.cpp ├── calibrationTable.cpp ├── compensation.cpp ├── dummy.cpp ├── ellipse2points.cpp ├── gate.cpp ├── global.cpp ├── in_polygon.cpp ├── nodeProperties.cpp ├── spline.cpp ├── trans_group.cpp └── transformation.cpp ├── switch_cytotool_version.R ├── thirdparty ├── CMakeLists.txt ├── armadillo │ ├── CMakeLists.txt │ ├── README │ ├── armadillo │ └── armadillo_bits │ │ ├── BaseCube_bones.hpp │ │ ├── BaseCube_meat.hpp │ │ ├── Base_bones.hpp │ │ ├── Base_meat.hpp │ │ ├── Col_bones.hpp │ │ ├── Col_meat.hpp │ │ ├── Cube_bones.hpp │ │ ├── Cube_meat.hpp │ │ ├── GenCube_bones.hpp │ │ ├── GenCube_meat.hpp │ │ ├── GenSpecialiser.hpp │ │ ├── Gen_bones.hpp │ │ ├── Gen_meat.hpp │ │ ├── GlueCube_bones.hpp │ │ ├── GlueCube_meat.hpp │ │ ├── Glue_bones.hpp │ │ ├── Glue_meat.hpp │ │ ├── MapMat_bones.hpp │ │ ├── MapMat_meat.hpp │ │ ├── Mat_bones.hpp │ │ ├── Mat_meat.hpp │ │ ├── OpCube_bones.hpp │ │ ├── OpCube_meat.hpp │ │ ├── Op_bones.hpp │ │ ├── Op_meat.hpp │ │ ├── Proxy.hpp │ │ ├── ProxyCube.hpp │ │ ├── Row_bones.hpp │ │ ├── Row_meat.hpp │ │ ├── SizeCube_bones.hpp │ │ ├── SizeCube_meat.hpp │ │ ├── SizeMat_bones.hpp │ │ ├── SizeMat_meat.hpp │ │ ├── SpBase_bones.hpp │ │ ├── SpBase_meat.hpp │ │ ├── SpCol_bones.hpp │ │ ├── SpCol_meat.hpp │ │ ├── SpGlue_bones.hpp │ │ ├── SpGlue_meat.hpp │ │ ├── SpMat_bones.hpp │ │ ├── SpMat_iterators_meat.hpp │ │ ├── SpMat_meat.hpp │ │ ├── SpOp_bones.hpp │ │ ├── SpOp_meat.hpp │ │ ├── SpProxy.hpp │ │ ├── SpRow_bones.hpp │ │ ├── SpRow_meat.hpp │ │ ├── SpSubview_bones.hpp │ │ ├── SpSubview_iterators_meat.hpp │ │ ├── SpSubview_meat.hpp │ │ ├── SpValProxy_bones.hpp │ │ ├── SpValProxy_meat.hpp │ │ ├── access.hpp │ │ ├── arma_cmath.hpp │ │ ├── arma_config.hpp │ │ ├── arma_forward.hpp │ │ ├── arma_ostream_bones.hpp │ │ ├── arma_ostream_meat.hpp │ │ ├── arma_rng.hpp │ │ ├── arma_rng_cxx11.hpp │ │ ├── arma_rng_cxx98.hpp │ │ ├── arma_static_check.hpp │ │ ├── arma_str.hpp │ │ ├── arma_version.hpp │ │ ├── arrayops_bones.hpp │ │ ├── arrayops_meat.hpp │ │ ├── auxlib_bones.hpp │ │ ├── auxlib_meat.hpp │ │ ├── band_helper.hpp │ │ ├── compiler_extra.hpp │ │ ├── compiler_setup.hpp │ │ ├── compiler_setup_post.hpp │ │ ├── cond_rel_bones.hpp │ │ ├── cond_rel_meat.hpp │ │ ├── config.hpp │ │ ├── config.hpp.cmake │ │ ├── constants.hpp │ │ ├── constants_old.hpp │ │ ├── debug.hpp │ │ ├── def_arpack.hpp │ │ ├── def_atlas.hpp │ │ ├── def_blas.hpp │ │ ├── def_hdf5.hpp │ │ ├── def_lapack.hpp │ │ ├── def_superlu.hpp │ │ ├── diagmat_proxy.hpp │ │ ├── diagview_bones.hpp │ │ ├── diagview_meat.hpp │ │ ├── diskio_bones.hpp │ │ ├── diskio_meat.hpp │ │ ├── distr_param.hpp │ │ ├── eGlueCube_bones.hpp │ │ ├── eGlueCube_meat.hpp │ │ ├── eGlue_bones.hpp │ │ ├── eGlue_meat.hpp │ │ ├── eOpCube_bones.hpp │ │ ├── eOpCube_meat.hpp │ │ ├── eOp_bones.hpp │ │ ├── eOp_meat.hpp │ │ ├── eglue_core_bones.hpp │ │ ├── eglue_core_meat.hpp │ │ ├── eop_aux.hpp │ │ ├── eop_core_bones.hpp │ │ ├── eop_core_meat.hpp │ │ ├── fft_engine.hpp │ │ ├── field_bones.hpp │ │ ├── field_meat.hpp │ │ ├── fn_accu.hpp │ │ ├── fn_all.hpp │ │ ├── fn_any.hpp │ │ ├── fn_approx_equal.hpp │ │ ├── fn_as_scalar.hpp │ │ ├── fn_chi2rnd.hpp │ │ ├── fn_chol.hpp │ │ ├── fn_clamp.hpp │ │ ├── fn_cond.hpp │ │ ├── fn_conv.hpp │ │ ├── fn_conv_to.hpp │ │ ├── fn_cor.hpp │ │ ├── fn_cov.hpp │ │ ├── fn_cross.hpp │ │ ├── fn_cumprod.hpp │ │ ├── fn_cumsum.hpp │ │ ├── fn_det.hpp │ │ ├── fn_diagmat.hpp │ │ ├── fn_diagvec.hpp │ │ ├── fn_diff.hpp │ │ ├── fn_dot.hpp │ │ ├── fn_eig_gen.hpp │ │ ├── fn_eig_pair.hpp │ │ ├── fn_eig_sym.hpp │ │ ├── fn_eigs_gen.hpp │ │ ├── fn_eigs_sym.hpp │ │ ├── fn_elem.hpp │ │ ├── fn_eps.hpp │ │ ├── fn_expmat.hpp │ │ ├── fn_eye.hpp │ │ ├── fn_fft.hpp │ │ ├── fn_fft2.hpp │ │ ├── fn_find.hpp │ │ ├── fn_find_unique.hpp │ │ ├── fn_flip.hpp │ │ ├── fn_hess.hpp │ │ ├── fn_hist.hpp │ │ ├── fn_histc.hpp │ │ ├── fn_index_max.hpp │ │ ├── fn_index_min.hpp │ │ ├── fn_inplace_strans.hpp │ │ ├── fn_inplace_trans.hpp │ │ ├── fn_interp1.hpp │ │ ├── fn_intersect.hpp │ │ ├── fn_inv.hpp │ │ ├── fn_join.hpp │ │ ├── fn_kmeans.hpp │ │ ├── fn_kron.hpp │ │ ├── fn_log_det.hpp │ │ ├── fn_logmat.hpp │ │ ├── fn_lu.hpp │ │ ├── fn_max.hpp │ │ ├── fn_mean.hpp │ │ ├── fn_median.hpp │ │ ├── fn_min.hpp │ │ ├── fn_misc.hpp │ │ ├── fn_mvnrnd.hpp │ │ ├── fn_n_unique.hpp │ │ ├── fn_nonzeros.hpp │ │ ├── fn_norm.hpp │ │ ├── fn_normalise.hpp │ │ ├── fn_normcdf.hpp │ │ ├── fn_normpdf.hpp │ │ ├── fn_numel.hpp │ │ ├── fn_ones.hpp │ │ ├── fn_orth_null.hpp │ │ ├── fn_pinv.hpp │ │ ├── fn_polyfit.hpp │ │ ├── fn_polyval.hpp │ │ ├── fn_princomp.hpp │ │ ├── fn_prod.hpp │ │ ├── fn_qr.hpp │ │ ├── fn_qz.hpp │ │ ├── fn_randg.hpp │ │ ├── fn_randi.hpp │ │ ├── fn_randn.hpp │ │ ├── fn_randu.hpp │ │ ├── fn_range.hpp │ │ ├── fn_rank.hpp │ │ ├── fn_regspace.hpp │ │ ├── fn_repelem.hpp │ │ ├── fn_repmat.hpp │ │ ├── fn_reshape.hpp │ │ ├── fn_resize.hpp │ │ ├── fn_reverse.hpp │ │ ├── fn_roots.hpp │ │ ├── fn_schur.hpp │ │ ├── fn_shift.hpp │ │ ├── fn_shuffle.hpp │ │ ├── fn_size.hpp │ │ ├── fn_solve.hpp │ │ ├── fn_sort.hpp │ │ ├── fn_sort_index.hpp │ │ ├── fn_speye.hpp │ │ ├── fn_spones.hpp │ │ ├── fn_sprandn.hpp │ │ ├── fn_sprandu.hpp │ │ ├── fn_spsolve.hpp │ │ ├── fn_sqrtmat.hpp │ │ ├── fn_stddev.hpp │ │ ├── fn_strans.hpp │ │ ├── fn_sum.hpp │ │ ├── fn_svd.hpp │ │ ├── fn_svds.hpp │ │ ├── fn_syl_lyap.hpp │ │ ├── fn_symmat.hpp │ │ ├── fn_toeplitz.hpp │ │ ├── fn_trace.hpp │ │ ├── fn_trans.hpp │ │ ├── fn_trapz.hpp │ │ ├── fn_trig.hpp │ │ ├── fn_trimat.hpp │ │ ├── fn_trunc_exp.hpp │ │ ├── fn_trunc_log.hpp │ │ ├── fn_unique.hpp │ │ ├── fn_var.hpp │ │ ├── fn_vectorise.hpp │ │ ├── fn_wishrnd.hpp │ │ ├── fn_zeros.hpp │ │ ├── glue_affmul_bones.hpp │ │ ├── glue_affmul_meat.hpp │ │ ├── glue_atan2_bones.hpp │ │ ├── glue_atan2_meat.hpp │ │ ├── glue_conv_bones.hpp │ │ ├── glue_conv_meat.hpp │ │ ├── glue_cor_bones.hpp │ │ ├── glue_cor_meat.hpp │ │ ├── glue_cov_bones.hpp │ │ ├── glue_cov_meat.hpp │ │ ├── glue_cross_bones.hpp │ │ ├── glue_cross_meat.hpp │ │ ├── glue_hist_bones.hpp │ │ ├── glue_hist_meat.hpp │ │ ├── glue_histc_bones.hpp │ │ ├── glue_histc_meat.hpp │ │ ├── glue_hypot_bones.hpp │ │ ├── glue_hypot_meat.hpp │ │ ├── glue_intersect_bones.hpp │ │ ├── glue_intersect_meat.hpp │ │ ├── glue_join_bones.hpp │ │ ├── glue_join_meat.hpp │ │ ├── glue_kron_bones.hpp │ │ ├── glue_kron_meat.hpp │ │ ├── glue_max_bones.hpp │ │ ├── glue_max_meat.hpp │ │ ├── glue_min_bones.hpp │ │ ├── glue_min_meat.hpp │ │ ├── glue_mixed_bones.hpp │ │ ├── glue_mixed_meat.hpp │ │ ├── glue_mvnrnd_bones.hpp │ │ ├── glue_mvnrnd_meat.hpp │ │ ├── glue_polyfit_bones.hpp │ │ ├── glue_polyfit_meat.hpp │ │ ├── glue_polyval_bones.hpp │ │ ├── glue_polyval_meat.hpp │ │ ├── glue_relational_bones.hpp │ │ ├── glue_relational_meat.hpp │ │ ├── glue_solve_bones.hpp │ │ ├── glue_solve_meat.hpp │ │ ├── glue_times_bones.hpp │ │ ├── glue_times_meat.hpp │ │ ├── glue_toeplitz_bones.hpp │ │ ├── glue_toeplitz_meat.hpp │ │ ├── glue_trapz_bones.hpp │ │ ├── glue_trapz_meat.hpp │ │ ├── gmm_diag_bones.hpp │ │ ├── gmm_diag_meat.hpp │ │ ├── gmm_full_bones.hpp │ │ ├── gmm_full_meat.hpp │ │ ├── gmm_misc_bones.hpp │ │ ├── gmm_misc_meat.hpp │ │ ├── hdf5_misc.hpp │ │ ├── include_atlas.hpp │ │ ├── include_hdf5.hpp │ │ ├── include_superlu.hpp │ │ ├── injector_bones.hpp │ │ ├── injector_meat.hpp │ │ ├── memory.hpp │ │ ├── mp_misc.hpp │ │ ├── mtGlueCube_bones.hpp │ │ ├── mtGlueCube_meat.hpp │ │ ├── mtGlue_bones.hpp │ │ ├── mtGlue_meat.hpp │ │ ├── mtOpCube_bones.hpp │ │ ├── mtOpCube_meat.hpp │ │ ├── mtOp_bones.hpp │ │ ├── mtOp_meat.hpp │ │ ├── mtSpOp_bones.hpp │ │ ├── mtSpOp_meat.hpp │ │ ├── mul_gemm.hpp │ │ ├── mul_gemm_mixed.hpp │ │ ├── mul_gemv.hpp │ │ ├── mul_herk.hpp │ │ ├── mul_syrk.hpp │ │ ├── newarp_DenseGenMatProd_bones.hpp │ │ ├── newarp_DenseGenMatProd_meat.hpp │ │ ├── newarp_DoubleShiftQR_bones.hpp │ │ ├── newarp_DoubleShiftQR_meat.hpp │ │ ├── newarp_EigsSelect.hpp │ │ ├── newarp_GenEigsSolver_bones.hpp │ │ ├── newarp_GenEigsSolver_meat.hpp │ │ ├── newarp_SortEigenvalue.hpp │ │ ├── newarp_SparseGenMatProd_bones.hpp │ │ ├── newarp_SparseGenMatProd_meat.hpp │ │ ├── newarp_SymEigsSolver_bones.hpp │ │ ├── newarp_SymEigsSolver_meat.hpp │ │ ├── newarp_TridiagEigen_bones.hpp │ │ ├── newarp_TridiagEigen_meat.hpp │ │ ├── newarp_UpperHessenbergEigen_bones.hpp │ │ ├── newarp_UpperHessenbergEigen_meat.hpp │ │ ├── newarp_UpperHessenbergQR_bones.hpp │ │ ├── newarp_UpperHessenbergQR_meat.hpp │ │ ├── newarp_cx_attrib.hpp │ │ ├── op_all_bones.hpp │ │ ├── op_all_meat.hpp │ │ ├── op_any_bones.hpp │ │ ├── op_any_meat.hpp │ │ ├── op_chi2rnd_bones.hpp │ │ ├── op_chi2rnd_meat.hpp │ │ ├── op_chol_bones.hpp │ │ ├── op_chol_meat.hpp │ │ ├── op_clamp_bones.hpp │ │ ├── op_clamp_meat.hpp │ │ ├── op_cond_bones.hpp │ │ ├── op_cond_meat.hpp │ │ ├── op_cor_bones.hpp │ │ ├── op_cor_meat.hpp │ │ ├── op_cov_bones.hpp │ │ ├── op_cov_meat.hpp │ │ ├── op_cumprod_bones.hpp │ │ ├── op_cumprod_meat.hpp │ │ ├── op_cumsum_bones.hpp │ │ ├── op_cumsum_meat.hpp │ │ ├── op_cx_scalar_bones.hpp │ │ ├── op_cx_scalar_meat.hpp │ │ ├── op_diagmat_bones.hpp │ │ ├── op_diagmat_meat.hpp │ │ ├── op_diagvec_bones.hpp │ │ ├── op_diagvec_meat.hpp │ │ ├── op_diff_bones.hpp │ │ ├── op_diff_meat.hpp │ │ ├── op_dot_bones.hpp │ │ ├── op_dot_meat.hpp │ │ ├── op_dotext_bones.hpp │ │ ├── op_dotext_meat.hpp │ │ ├── op_expmat_bones.hpp │ │ ├── op_expmat_meat.hpp │ │ ├── op_fft_bones.hpp │ │ ├── op_fft_meat.hpp │ │ ├── op_find_bones.hpp │ │ ├── op_find_meat.hpp │ │ ├── op_find_unique_bones.hpp │ │ ├── op_find_unique_meat.hpp │ │ ├── op_flip_bones.hpp │ │ ├── op_flip_meat.hpp │ │ ├── op_hist_bones.hpp │ │ ├── op_hist_meat.hpp │ │ ├── op_htrans_bones.hpp │ │ ├── op_htrans_meat.hpp │ │ ├── op_index_max_bones.hpp │ │ ├── op_index_max_meat.hpp │ │ ├── op_index_min_bones.hpp │ │ ├── op_index_min_meat.hpp │ │ ├── op_inv_bones.hpp │ │ ├── op_inv_meat.hpp │ │ ├── op_logmat_bones.hpp │ │ ├── op_logmat_meat.hpp │ │ ├── op_max_bones.hpp │ │ ├── op_max_meat.hpp │ │ ├── op_mean_bones.hpp │ │ ├── op_mean_meat.hpp │ │ ├── op_median_bones.hpp │ │ ├── op_median_meat.hpp │ │ ├── op_min_bones.hpp │ │ ├── op_min_meat.hpp │ │ ├── op_misc_bones.hpp │ │ ├── op_misc_meat.hpp │ │ ├── op_nonzeros_bones.hpp │ │ ├── op_nonzeros_meat.hpp │ │ ├── op_norm_bones.hpp │ │ ├── op_norm_meat.hpp │ │ ├── op_normalise_bones.hpp │ │ ├── op_normalise_meat.hpp │ │ ├── op_orth_null_bones.hpp │ │ ├── op_orth_null_meat.hpp │ │ ├── op_pinv_bones.hpp │ │ ├── op_pinv_meat.hpp │ │ ├── op_princomp_bones.hpp │ │ ├── op_princomp_meat.hpp │ │ ├── op_prod_bones.hpp │ │ ├── op_prod_meat.hpp │ │ ├── op_range_bones.hpp │ │ ├── op_range_meat.hpp │ │ ├── op_relational_bones.hpp │ │ ├── op_relational_meat.hpp │ │ ├── op_repelem_bones.hpp │ │ ├── op_repelem_meat.hpp │ │ ├── op_repmat_bones.hpp │ │ ├── op_repmat_meat.hpp │ │ ├── op_reshape_bones.hpp │ │ ├── op_reshape_meat.hpp │ │ ├── op_resize_bones.hpp │ │ ├── op_resize_meat.hpp │ │ ├── op_reverse_bones.hpp │ │ ├── op_reverse_meat.hpp │ │ ├── op_roots_bones.hpp │ │ ├── op_roots_meat.hpp │ │ ├── op_shift_bones.hpp │ │ ├── op_shift_meat.hpp │ │ ├── op_shuffle_bones.hpp │ │ ├── op_shuffle_meat.hpp │ │ ├── op_sort_bones.hpp │ │ ├── op_sort_index_bones.hpp │ │ ├── op_sort_index_meat.hpp │ │ ├── op_sort_meat.hpp │ │ ├── op_sqrtmat_bones.hpp │ │ ├── op_sqrtmat_meat.hpp │ │ ├── op_stddev_bones.hpp │ │ ├── op_stddev_meat.hpp │ │ ├── op_strans_bones.hpp │ │ ├── op_strans_meat.hpp │ │ ├── op_sum_bones.hpp │ │ ├── op_sum_meat.hpp │ │ ├── op_symmat_bones.hpp │ │ ├── op_symmat_meat.hpp │ │ ├── op_toeplitz_bones.hpp │ │ ├── op_toeplitz_meat.hpp │ │ ├── op_trimat_bones.hpp │ │ ├── op_trimat_meat.hpp │ │ ├── op_unique_bones.hpp │ │ ├── op_unique_meat.hpp │ │ ├── op_var_bones.hpp │ │ ├── op_var_meat.hpp │ │ ├── op_vectorise_bones.hpp │ │ ├── op_vectorise_meat.hpp │ │ ├── op_wishrnd_bones.hpp │ │ ├── op_wishrnd_meat.hpp │ │ ├── operator_cube_div.hpp │ │ ├── operator_cube_minus.hpp │ │ ├── operator_cube_plus.hpp │ │ ├── operator_cube_relational.hpp │ │ ├── operator_cube_schur.hpp │ │ ├── operator_cube_times.hpp │ │ ├── operator_div.hpp │ │ ├── operator_minus.hpp │ │ ├── operator_ostream.hpp │ │ ├── operator_plus.hpp │ │ ├── operator_relational.hpp │ │ ├── operator_schur.hpp │ │ ├── operator_times.hpp │ │ ├── podarray_bones.hpp │ │ ├── podarray_meat.hpp │ │ ├── promote_type.hpp │ │ ├── restrictors.hpp │ │ ├── running_stat_bones.hpp │ │ ├── running_stat_meat.hpp │ │ ├── running_stat_vec_bones.hpp │ │ ├── running_stat_vec_meat.hpp │ │ ├── sp_auxlib_bones.hpp │ │ ├── sp_auxlib_meat.hpp │ │ ├── span.hpp │ │ ├── spdiagview_bones.hpp │ │ ├── spdiagview_meat.hpp │ │ ├── spglue_elem_helper_bones.hpp │ │ ├── spglue_elem_helper_meat.hpp │ │ ├── spglue_join_bones.hpp │ │ ├── spglue_join_meat.hpp │ │ ├── spglue_kron_bones.hpp │ │ ├── spglue_kron_meat.hpp │ │ ├── spglue_minus_bones.hpp │ │ ├── spglue_minus_meat.hpp │ │ ├── spglue_plus_bones.hpp │ │ ├── spglue_plus_meat.hpp │ │ ├── spglue_schur_bones.hpp │ │ ├── spglue_schur_meat.hpp │ │ ├── spglue_times_bones.hpp │ │ ├── spglue_times_meat.hpp │ │ ├── spop_diagmat_bones.hpp │ │ ├── spop_diagmat_meat.hpp │ │ ├── spop_htrans_bones.hpp │ │ ├── spop_htrans_meat.hpp │ │ ├── spop_max_bones.hpp │ │ ├── spop_max_meat.hpp │ │ ├── spop_mean_bones.hpp │ │ ├── spop_mean_meat.hpp │ │ ├── spop_min_bones.hpp │ │ ├── spop_min_meat.hpp │ │ ├── spop_misc_bones.hpp │ │ ├── spop_misc_meat.hpp │ │ ├── spop_normalise_bones.hpp │ │ ├── spop_normalise_meat.hpp │ │ ├── spop_repmat_bones.hpp │ │ ├── spop_repmat_meat.hpp │ │ ├── spop_reverse_bones.hpp │ │ ├── spop_reverse_meat.hpp │ │ ├── spop_strans_bones.hpp │ │ ├── spop_strans_meat.hpp │ │ ├── spop_sum_bones.hpp │ │ ├── spop_sum_meat.hpp │ │ ├── spop_symmat_bones.hpp │ │ ├── spop_symmat_meat.hpp │ │ ├── spop_trimat_bones.hpp │ │ ├── spop_trimat_meat.hpp │ │ ├── spop_var_bones.hpp │ │ ├── spop_var_meat.hpp │ │ ├── strip.hpp │ │ ├── subview_bones.hpp │ │ ├── subview_cube_bones.hpp │ │ ├── subview_cube_each_bones.hpp │ │ ├── subview_cube_each_meat.hpp │ │ ├── subview_cube_meat.hpp │ │ ├── subview_cube_slices_bones.hpp │ │ ├── subview_cube_slices_meat.hpp │ │ ├── subview_each_bones.hpp │ │ ├── subview_each_meat.hpp │ │ ├── subview_elem1_bones.hpp │ │ ├── subview_elem1_meat.hpp │ │ ├── subview_elem2_bones.hpp │ │ ├── subview_elem2_meat.hpp │ │ ├── subview_field_bones.hpp │ │ ├── subview_field_meat.hpp │ │ ├── subview_meat.hpp │ │ ├── sympd_helper.hpp │ │ ├── traits.hpp │ │ ├── typedef_elem.hpp │ │ ├── typedef_elem_check.hpp │ │ ├── typedef_mat.hpp │ │ ├── typedef_mat_fixed.hpp │ │ ├── unwrap.hpp │ │ ├── unwrap_cube.hpp │ │ ├── unwrap_spmat.hpp │ │ ├── upgrade_val.hpp │ │ ├── wall_clock_bones.hpp │ │ ├── wall_clock_meat.hpp │ │ ├── wrapper_arpack.hpp │ │ ├── wrapper_atlas.hpp │ │ ├── wrapper_blas.hpp │ │ ├── wrapper_lapack.hpp │ │ ├── wrapper_superlu.hpp │ │ ├── xtrans_mat_bones.hpp │ │ ├── xtrans_mat_meat.hpp │ │ ├── xvec_htrans_bones.hpp │ │ └── xvec_htrans_meat.hpp └── libhdf5 │ ├── CMakeLists.txt │ ├── README.md │ ├── hdf5small_cxx_1.10.3.tar.gz │ ├── install.sh │ └── 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