├── README.md ├── chexfound ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-311.pyc │ └── __init__.cpython-39.pyc ├── configs │ ├── __init__.py │ ├── __pycache__ │ │ └── __init__.cpython-39.pyc │ ├── eval │ │ ├── vitb14_pretrain.yaml │ │ ├── vitb14_reg4_pretrain.yaml │ │ ├── vitg14_pretrain.yaml │ │ ├── vitg14_reg4_pretrain.yaml │ │ ├── vitl14_pretrain.yaml │ │ ├── vitl14_reg4_pretrain.yaml │ │ ├── vits14_pretrain.yaml │ │ └── vits14_reg4_pretrain.yaml │ ├── ssl_default_config.yaml │ └── train │ │ ├── vitl16_ibot333.yaml │ │ ├── vitl16_ibot333_highres336.yaml │ │ ├── vitl16_ibot333_highres448.yaml │ │ └── vitl16_ibot333_highres512.yaml ├── data │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-311.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── adapters.cpython-311.pyc │ │ ├── adapters.cpython-39.pyc │ │ ├── augmentations.cpython-39.pyc │ │ ├── collate.cpython-39.pyc │ │ ├── loaders.cpython-311.pyc │ │ ├── loaders.cpython-39.pyc │ │ ├── masking.cpython-39.pyc │ │ ├── samplers.cpython-39.pyc │ │ ├── transforms.cpython-39.pyc │ │ ├── utils.cpython-39.pyc │ │ └── wrappers.cpython-39.pyc │ ├── adapters.py │ ├── augmentations.py │ ├── collate.py │ ├── datasets │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-311.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── chexpert.cpython-39.pyc │ │ │ ├── cxr_dataset.cpython-39.pyc │ │ │ ├── cxr_dataset222.cpython-39.pyc │ │ │ ├── cxr_dataset_plco.cpython-39.pyc │ │ │ ├── cxrlt.cpython-39.pyc │ │ │ ├── decoders.cpython-39.pyc │ │ │ ├── dinov2_mimic.cpython-39.pyc │ │ │ ├── extended.cpython-311.pyc │ │ │ ├── extended.cpython-39.pyc │ │ │ ├── image_net.cpython-311.pyc │ │ │ ├── image_net.cpython-39.pyc │ │ │ ├── image_net_22k.cpython-39.pyc │ │ │ ├── jsrt.cpython-39.pyc │ │ │ ├── medical_dataset.cpython-39.pyc │ │ │ ├── montgomery.cpython-39.pyc │ │ │ ├── nih_chest_xray.cpython-39.pyc │ │ │ ├── nlst.cpython-39.pyc │ │ │ ├── plco.cpython-39.pyc │ │ │ └── shenzhen.cpython-39.pyc │ │ ├── chexpert.py │ │ ├── cxr_dataset.py │ │ ├── cxr_dataset222.py │ │ ├── cxr_dataset_plco.py │ │ ├── cxrlt.py │ │ ├── decoders.py │ │ ├── dinov2_mimic.py │ │ ├── extended.py │ │ ├── image_net.py │ │ ├── image_net_22k.py │ │ ├── jsrt.py │ │ ├── medical_dataset.py │ │ ├── montgomery.py │ │ ├── nih_chest_xray.py │ │ ├── nlst.py │ │ ├── plco.py │ │ └── shenzhen.py │ ├── loaders.py │ ├── masking.py │ ├── samplers.py │ ├── transforms.py │ ├── utils.py │ └── wrappers.py ├── distributed │ ├── __init__.py │ └── __pycache__ │ │ └── __init__.cpython-39.pyc ├── eval │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── linear.cpython-39.pyc │ │ ├── losses.cpython-39.pyc │ │ ├── metrics.cpython-39.pyc │ │ ├── setup.cpython-39.pyc │ │ └── utils.cpython-39.pyc │ ├── classification │ │ ├── __pycache__ │ │ │ ├── glori.cpython-39.pyc │ │ │ └── utils.cpython-39.pyc │ │ ├── glori.py │ │ ├── knn.py │ │ ├── linear_glori.py │ │ └── utils.py │ ├── knn.py │ ├── linear.py │ ├── log_regression.py │ ├── losses.py │ ├── metrics.py │ ├── setup.py │ └── utils.py ├── fsdp │ ├── __init__.py │ └── __pycache__ │ │ └── __init__.cpython-39.pyc ├── hub │ ├── __init__.py │ ├── backbones.py │ ├── classifiers.py │ ├── depth │ │ ├── __init__.py │ │ ├── decode_heads.py │ │ ├── encoder_decoder.py │ │ └── ops.py │ ├── depthers.py │ └── utils.py ├── layers │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── attention.cpython-39.pyc │ │ ├── block.cpython-39.pyc │ │ ├── dino_head.cpython-39.pyc │ │ ├── drop_path.cpython-39.pyc │ │ ├── layer_scale.cpython-39.pyc │ │ ├── mlp.cpython-39.pyc │ │ ├── patch_embed.cpython-39.pyc │ │ └── swiglu_ffn.cpython-39.pyc │ ├── attention.py │ ├── block.py │ ├── dino_head.py │ ├── drop_path.py │ ├── layer_scale.py │ ├── mlp.py │ ├── patch_embed.py │ └── swiglu_ffn.py ├── logging │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ └── helpers.cpython-39.pyc │ └── helpers.py ├── logs │ └── log.txt ├── loss │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── dino_clstoken_loss.cpython-39.pyc │ │ ├── ibot_patch_loss.cpython-39.pyc │ │ └── koleo_loss.cpython-39.pyc │ ├── dino_clstoken_loss.py │ ├── ibot_patch_loss.py │ └── koleo_loss.py ├── models │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ └── vision_transformer.cpython-39.pyc │ └── vision_transformer.py ├── run │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ └── submit.cpython-39.pyc │ ├── eval │ │ ├── knn.py │ │ ├── linear.py │ │ └── log_regression.py │ ├── submit.py │ └── train │ │ └── train.py ├── train │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── ssl_meta_arch.cpython-39.pyc │ │ └── train.cpython-39.pyc │ ├── ssl_meta_arch.py │ └── train.py └── utils │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-39.pyc │ ├── cluster.cpython-39.pyc │ ├── config.cpython-39.pyc │ ├── param_groups.cpython-39.pyc │ └── utils.cpython-39.pyc │ ├── cluster.py │ ├── config.py │ ├── dtype.py │ ├── param_groups.py │ └── utils.py ├── conda-extras.yaml ├── notebooks ├── chexfound_example.ipynb ├── glori_attns.png ├── images │ ├── Atelectasis.jpg │ ├── Cardiomegaly.jpg │ ├── Consolidation.jpg │ ├── Edema.jpg │ └── Pleural Effusion.jpg └── predictive_confidence.png └── scripts ├── eval ├── run_eval_shenzhen.sh └── run_eval_shenzhen_glori.sh ├── run_train_ibot333_224.sh ├── run_train_ibot333_highres336.sh ├── run_train_ibot333_highres448.sh └── run_train_ibot333_highres512.sh /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/README.md -------------------------------------------------------------------------------- /chexfound/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/__init__.py -------------------------------------------------------------------------------- /chexfound/__pycache__/__init__.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/__pycache__/__init__.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/configs/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/__init__.py -------------------------------------------------------------------------------- /chexfound/configs/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/configs/eval/vitb14_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitb14_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vitb14_reg4_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitb14_reg4_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vitg14_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitg14_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vitg14_reg4_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitg14_reg4_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vitl14_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitl14_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vitl14_reg4_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vitl14_reg4_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vits14_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vits14_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/eval/vits14_reg4_pretrain.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/eval/vits14_reg4_pretrain.yaml -------------------------------------------------------------------------------- /chexfound/configs/ssl_default_config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/ssl_default_config.yaml -------------------------------------------------------------------------------- /chexfound/configs/train/vitl16_ibot333.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/train/vitl16_ibot333.yaml -------------------------------------------------------------------------------- /chexfound/configs/train/vitl16_ibot333_highres336.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/train/vitl16_ibot333_highres336.yaml -------------------------------------------------------------------------------- /chexfound/configs/train/vitl16_ibot333_highres448.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/train/vitl16_ibot333_highres448.yaml -------------------------------------------------------------------------------- /chexfound/configs/train/vitl16_ibot333_highres512.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/configs/train/vitl16_ibot333_highres512.yaml -------------------------------------------------------------------------------- /chexfound/data/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__init__.py -------------------------------------------------------------------------------- /chexfound/data/__pycache__/__init__.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/__init__.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/adapters.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/adapters.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/adapters.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/adapters.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/augmentations.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/augmentations.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/collate.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/collate.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/loaders.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/loaders.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/loaders.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/loaders.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/masking.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/masking.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/samplers.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/samplers.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/transforms.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/transforms.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/utils.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/utils.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/__pycache__/wrappers.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/__pycache__/wrappers.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/adapters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/adapters.py -------------------------------------------------------------------------------- /chexfound/data/augmentations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/augmentations.py -------------------------------------------------------------------------------- /chexfound/data/collate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/collate.py -------------------------------------------------------------------------------- /chexfound/data/datasets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__init__.py -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/__init__.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/__init__.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/chexpert.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/chexpert.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/cxr_dataset.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/cxr_dataset.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/cxr_dataset222.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/cxr_dataset222.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/cxr_dataset_plco.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/cxr_dataset_plco.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/cxrlt.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/cxrlt.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/decoders.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/decoders.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/dinov2_mimic.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/dinov2_mimic.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/extended.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/extended.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/extended.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/extended.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/image_net.cpython-311.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/image_net.cpython-311.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/image_net.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/image_net.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/image_net_22k.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/image_net_22k.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/jsrt.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/jsrt.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/medical_dataset.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/medical_dataset.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/montgomery.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/montgomery.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/nih_chest_xray.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/nih_chest_xray.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/nlst.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/nlst.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/plco.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/plco.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/__pycache__/shenzhen.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/__pycache__/shenzhen.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/data/datasets/chexpert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/chexpert.py -------------------------------------------------------------------------------- /chexfound/data/datasets/cxr_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/cxr_dataset.py -------------------------------------------------------------------------------- /chexfound/data/datasets/cxr_dataset222.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/cxr_dataset222.py -------------------------------------------------------------------------------- /chexfound/data/datasets/cxr_dataset_plco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/cxr_dataset_plco.py -------------------------------------------------------------------------------- /chexfound/data/datasets/cxrlt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/cxrlt.py -------------------------------------------------------------------------------- /chexfound/data/datasets/decoders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/decoders.py -------------------------------------------------------------------------------- /chexfound/data/datasets/dinov2_mimic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/dinov2_mimic.py -------------------------------------------------------------------------------- /chexfound/data/datasets/extended.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/extended.py -------------------------------------------------------------------------------- /chexfound/data/datasets/image_net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/image_net.py -------------------------------------------------------------------------------- /chexfound/data/datasets/image_net_22k.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/image_net_22k.py -------------------------------------------------------------------------------- /chexfound/data/datasets/jsrt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/jsrt.py -------------------------------------------------------------------------------- /chexfound/data/datasets/medical_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/medical_dataset.py -------------------------------------------------------------------------------- /chexfound/data/datasets/montgomery.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/montgomery.py -------------------------------------------------------------------------------- /chexfound/data/datasets/nih_chest_xray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/nih_chest_xray.py -------------------------------------------------------------------------------- /chexfound/data/datasets/nlst.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/nlst.py -------------------------------------------------------------------------------- /chexfound/data/datasets/plco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/plco.py -------------------------------------------------------------------------------- /chexfound/data/datasets/shenzhen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/datasets/shenzhen.py -------------------------------------------------------------------------------- /chexfound/data/loaders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/loaders.py -------------------------------------------------------------------------------- /chexfound/data/masking.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/masking.py -------------------------------------------------------------------------------- /chexfound/data/samplers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/samplers.py -------------------------------------------------------------------------------- /chexfound/data/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/transforms.py -------------------------------------------------------------------------------- /chexfound/data/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/utils.py -------------------------------------------------------------------------------- /chexfound/data/wrappers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/data/wrappers.py -------------------------------------------------------------------------------- /chexfound/distributed/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/distributed/__init__.py -------------------------------------------------------------------------------- /chexfound/distributed/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/distributed/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__init__.py -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/linear.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/linear.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/losses.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/losses.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/metrics.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/metrics.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/setup.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/setup.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/__pycache__/utils.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/__pycache__/utils.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/classification/__pycache__/glori.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/__pycache__/glori.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/classification/__pycache__/utils.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/__pycache__/utils.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/eval/classification/glori.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/glori.py -------------------------------------------------------------------------------- /chexfound/eval/classification/knn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/knn.py -------------------------------------------------------------------------------- /chexfound/eval/classification/linear_glori.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/linear_glori.py -------------------------------------------------------------------------------- /chexfound/eval/classification/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/classification/utils.py -------------------------------------------------------------------------------- /chexfound/eval/knn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/knn.py -------------------------------------------------------------------------------- /chexfound/eval/linear.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/linear.py -------------------------------------------------------------------------------- /chexfound/eval/log_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/log_regression.py -------------------------------------------------------------------------------- /chexfound/eval/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/losses.py -------------------------------------------------------------------------------- /chexfound/eval/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/metrics.py -------------------------------------------------------------------------------- /chexfound/eval/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/setup.py -------------------------------------------------------------------------------- /chexfound/eval/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/eval/utils.py -------------------------------------------------------------------------------- /chexfound/fsdp/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/fsdp/__init__.py -------------------------------------------------------------------------------- /chexfound/fsdp/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/fsdp/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/hub/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/__init__.py -------------------------------------------------------------------------------- /chexfound/hub/backbones.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/backbones.py -------------------------------------------------------------------------------- /chexfound/hub/classifiers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/classifiers.py -------------------------------------------------------------------------------- /chexfound/hub/depth/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/depth/__init__.py -------------------------------------------------------------------------------- /chexfound/hub/depth/decode_heads.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/depth/decode_heads.py -------------------------------------------------------------------------------- /chexfound/hub/depth/encoder_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/depth/encoder_decoder.py -------------------------------------------------------------------------------- /chexfound/hub/depth/ops.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/depth/ops.py -------------------------------------------------------------------------------- /chexfound/hub/depthers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/depthers.py -------------------------------------------------------------------------------- /chexfound/hub/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/hub/utils.py -------------------------------------------------------------------------------- /chexfound/layers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__init__.py -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/attention.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/attention.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/block.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/block.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/dino_head.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/dino_head.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/drop_path.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/drop_path.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/layer_scale.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/layer_scale.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/mlp.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/mlp.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/patch_embed.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/patch_embed.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/__pycache__/swiglu_ffn.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/__pycache__/swiglu_ffn.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/layers/attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/attention.py -------------------------------------------------------------------------------- /chexfound/layers/block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/block.py -------------------------------------------------------------------------------- /chexfound/layers/dino_head.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/dino_head.py -------------------------------------------------------------------------------- /chexfound/layers/drop_path.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/drop_path.py -------------------------------------------------------------------------------- /chexfound/layers/layer_scale.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/layer_scale.py -------------------------------------------------------------------------------- /chexfound/layers/mlp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/mlp.py -------------------------------------------------------------------------------- /chexfound/layers/patch_embed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/patch_embed.py -------------------------------------------------------------------------------- /chexfound/layers/swiglu_ffn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/layers/swiglu_ffn.py -------------------------------------------------------------------------------- /chexfound/logging/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/logging/__init__.py -------------------------------------------------------------------------------- /chexfound/logging/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/logging/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/logging/__pycache__/helpers.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/logging/__pycache__/helpers.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/logging/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/logging/helpers.py -------------------------------------------------------------------------------- /chexfound/logs/log.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/logs/log.txt -------------------------------------------------------------------------------- /chexfound/loss/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/__init__.py -------------------------------------------------------------------------------- /chexfound/loss/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/loss/__pycache__/dino_clstoken_loss.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/__pycache__/dino_clstoken_loss.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/loss/__pycache__/ibot_patch_loss.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/__pycache__/ibot_patch_loss.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/loss/__pycache__/koleo_loss.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/__pycache__/koleo_loss.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/loss/dino_clstoken_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/dino_clstoken_loss.py -------------------------------------------------------------------------------- /chexfound/loss/ibot_patch_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/ibot_patch_loss.py -------------------------------------------------------------------------------- /chexfound/loss/koleo_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/loss/koleo_loss.py -------------------------------------------------------------------------------- /chexfound/models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/models/__init__.py -------------------------------------------------------------------------------- /chexfound/models/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/models/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/models/__pycache__/vision_transformer.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/models/__pycache__/vision_transformer.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/models/vision_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/models/vision_transformer.py -------------------------------------------------------------------------------- /chexfound/run/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/__init__.py -------------------------------------------------------------------------------- /chexfound/run/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/run/__pycache__/submit.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/__pycache__/submit.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/run/eval/knn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/eval/knn.py -------------------------------------------------------------------------------- /chexfound/run/eval/linear.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/eval/linear.py -------------------------------------------------------------------------------- /chexfound/run/eval/log_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/eval/log_regression.py -------------------------------------------------------------------------------- /chexfound/run/submit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/submit.py -------------------------------------------------------------------------------- /chexfound/run/train/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/run/train/train.py -------------------------------------------------------------------------------- /chexfound/train/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/__init__.py -------------------------------------------------------------------------------- /chexfound/train/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/train/__pycache__/ssl_meta_arch.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/__pycache__/ssl_meta_arch.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/train/__pycache__/train.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/__pycache__/train.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/train/ssl_meta_arch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/ssl_meta_arch.py -------------------------------------------------------------------------------- /chexfound/train/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/train/train.py -------------------------------------------------------------------------------- /chexfound/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__init__.py -------------------------------------------------------------------------------- /chexfound/utils/__pycache__/__init__.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__pycache__/__init__.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/utils/__pycache__/cluster.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__pycache__/cluster.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/utils/__pycache__/config.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__pycache__/config.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/utils/__pycache__/param_groups.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__pycache__/param_groups.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/utils/__pycache__/utils.cpython-39.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/__pycache__/utils.cpython-39.pyc -------------------------------------------------------------------------------- /chexfound/utils/cluster.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/cluster.py -------------------------------------------------------------------------------- /chexfound/utils/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/config.py -------------------------------------------------------------------------------- /chexfound/utils/dtype.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/dtype.py -------------------------------------------------------------------------------- /chexfound/utils/param_groups.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/param_groups.py -------------------------------------------------------------------------------- /chexfound/utils/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/chexfound/utils/utils.py -------------------------------------------------------------------------------- /conda-extras.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/conda-extras.yaml -------------------------------------------------------------------------------- /notebooks/chexfound_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/chexfound_example.ipynb -------------------------------------------------------------------------------- /notebooks/glori_attns.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/glori_attns.png -------------------------------------------------------------------------------- /notebooks/images/Atelectasis.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/images/Atelectasis.jpg -------------------------------------------------------------------------------- /notebooks/images/Cardiomegaly.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/images/Cardiomegaly.jpg -------------------------------------------------------------------------------- /notebooks/images/Consolidation.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/images/Consolidation.jpg -------------------------------------------------------------------------------- /notebooks/images/Edema.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/images/Edema.jpg -------------------------------------------------------------------------------- /notebooks/images/Pleural Effusion.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/images/Pleural Effusion.jpg -------------------------------------------------------------------------------- /notebooks/predictive_confidence.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/notebooks/predictive_confidence.png -------------------------------------------------------------------------------- /scripts/eval/run_eval_shenzhen.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/eval/run_eval_shenzhen.sh -------------------------------------------------------------------------------- /scripts/eval/run_eval_shenzhen_glori.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/eval/run_eval_shenzhen_glori.sh -------------------------------------------------------------------------------- /scripts/run_train_ibot333_224.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/run_train_ibot333_224.sh -------------------------------------------------------------------------------- /scripts/run_train_ibot333_highres336.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/run_train_ibot333_highres336.sh -------------------------------------------------------------------------------- /scripts/run_train_ibot333_highres448.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/run_train_ibot333_highres448.sh -------------------------------------------------------------------------------- /scripts/run_train_ibot333_highres512.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RPIDIAL/CheXFound/HEAD/scripts/run_train_ibot333_highres512.sh --------------------------------------------------------------------------------