├── .clang-format ├── .gersemi.config ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── CMakeLists.txt ├── COPYRIGHT.TXT ├── CTestConfig.cmake ├── CodeContribution.md ├── GettingStarted.md ├── HEADER.TXT ├── INSTALLATION.md ├── ITKKWStyleFiles.txt.in ├── LICENSE.TXT ├── ORGANIZATION.TXT ├── README.md ├── applications ├── CMakeLists.txt ├── README.md ├── rtk3Doutputimage_group.py ├── rtk3Doutputimage_section.ggo ├── rtk4Doutputimage_section.ggo ├── rtkadmmtotalvariation │ ├── CMakeLists.txt │ ├── README.md │ ├── TotalVariationRegularizedReconstruction.sh │ ├── rtkadmmtotalvariation.cxx │ ├── rtkadmmtotalvariation.ggo │ └── rtkadmmtotalvariation.py ├── rtkadmmwavelets │ ├── CMakeLists.txt │ ├── DaubechiesWavelets.sh │ ├── README.md │ ├── rtkadmmwavelets.cxx │ ├── rtkadmmwavelets.ggo │ └── rtkadmmwavelets.py ├── rtkamsterdamshroud │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkamsterdamshroud.cxx │ ├── rtkamsterdamshroud.ggo │ └── rtkamsterdamshroud.py ├── rtkargumentparser.py ├── rtkbackprojections │ ├── CMakeLists.txt │ ├── rtkbackprojections.cxx │ ├── rtkbackprojections.ggo │ └── rtkbackprojections.py ├── rtkbioscangeometry │ ├── CMakeLists.txt │ ├── rtkbioscangeometry.cxx │ ├── rtkbioscangeometry.ggo │ └── rtkbioscangeometry.py ├── rtkcheckimagequality │ ├── CMakeLists.txt │ ├── rtkcheckimagequality.cxx │ ├── rtkcheckimagequality.ggo │ └── rtkcheckimagequality.py ├── rtkconjugategradient │ ├── CMakeLists.txt │ ├── ConjugateGradient2D.sh │ ├── ConjugateGradient3D.sh │ ├── NoisyConjugateGradient.sh │ ├── README.md │ ├── rtkconjugategradient.cxx │ ├── rtkconjugategradient.ggo │ └── rtkconjugategradient.py ├── rtkdigisensgeometry │ ├── CMakeLists.txt │ ├── rtkdigisensgeometry.cxx │ ├── rtkdigisensgeometry.ggo │ └── rtkdigisensgeometry.py ├── rtkdrawgeometricphantom │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkdrawgeometricphantom.cxx │ ├── rtkdrawgeometricphantom.ggo │ └── rtkdrawgeometricphantom.py ├── rtkdrawshepploganphantom │ ├── CMakeLists.txt │ ├── rtkdrawshepploganphantom.cxx │ ├── rtkdrawshepploganphantom.ggo │ └── rtkdrawshepploganphantom.py ├── rtkdualenergyforwardmodel │ ├── CMakeLists.txt │ ├── rtkdualenergyforwardmodel.cxx │ ├── rtkdualenergyforwardmodel.ggo │ └── rtkdualenergyforwardmodel.py ├── rtkdualenergysimplexdecomposition │ ├── CMakeLists.txt │ ├── rtkdualenergysimplexdecomposition.cxx │ ├── rtkdualenergysimplexdecomposition.ggo │ └── rtkdualenergysimplexdecomposition.py ├── rtkelektasynergygeometry │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkelektasynergygeometry.cxx │ ├── rtkelektasynergygeometry.ggo │ └── rtkelektasynergygeometry.py ├── rtkextractphasesignal │ ├── CMakeLists.txt │ ├── rtkextractphasesignal.cxx │ ├── rtkextractphasesignal.ggo │ └── rtkextractphasesignal.py ├── rtkextractshroudsignal │ ├── CMakeLists.txt │ ├── rtkextractshroudsignal.cxx │ └── rtkextractshroudsignal.ggo ├── rtkfdk │ ├── CMakeLists.txt │ ├── FDK2D.sh │ ├── FDK3D.sh │ ├── README.md │ ├── rtkfdk.cxx │ ├── rtkfdk.ggo │ └── rtkfdk.py ├── rtkfieldofview │ ├── CMakeLists.txt │ ├── rtkfieldofview.cxx │ ├── rtkfieldofview.ggo │ └── rtkfieldofview.py ├── rtkforwardprojections │ ├── CMakeLists.txt │ ├── ForwardProjection.sh │ ├── README.md │ ├── rtkforwardprojections.cxx │ ├── rtkforwardprojections.ggo │ └── rtkforwardprojections.py ├── rtkfourdconjugategradient │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkfourdconjugategradient.cxx │ └── rtkfourdconjugategradient.ggo ├── rtkfourdfdk │ ├── CMakeLists.txt │ ├── rtkfourdfdk.cxx │ └── rtkfourdfdk.ggo ├── rtkfourdrooster │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkfourdrooster.cxx │ └── rtkfourdrooster.ggo ├── rtkfourdsart │ ├── CMakeLists.txt │ ├── rtkfourdsart.cxx │ └── rtkfourdsart.ggo ├── rtkgaincorrection │ ├── CMakeLists.txt │ ├── rtkgaincorrection.cxx │ ├── rtkgaincorrection.ggo │ └── rtkgaincorrection.py ├── rtki0estimation │ ├── CMakeLists.txt │ ├── rtki0estimation.cxx │ ├── rtki0estimation.ggo │ └── rtki0estimation.py ├── rtkimagxgeometry │ ├── CMakeLists.txt │ ├── rtkimagxgeometry.cxx │ ├── rtkimagxgeometry.ggo │ └── rtkimagxgeometry.py ├── rtkinputprojections_group.py ├── rtkinputprojections_section.ggo ├── rtkiterations_group.py ├── rtkiterations_section.ggo ├── rtkiterativefdk │ ├── CMakeLists.txt │ ├── rtkiterativefdk.cxx │ └── rtkiterativefdk.ggo ├── rtklagcorrection │ ├── CMakeLists.txt │ ├── rtklagcorrection.cxx │ └── rtklagcorrection.ggo ├── rtkmaskcollimation │ ├── CMakeLists.txt │ ├── rtkmaskcollimation.cxx │ ├── rtkmaskcollimation.ggo │ └── rtkmaskcollimation.py ├── rtkmcrooster │ ├── CMakeLists.txt │ ├── rtkmcrooster.cxx │ └── rtkmcrooster.ggo ├── rtkmotioncompensatedfourdconjugategradient │ ├── CMakeLists.txt │ ├── rtkmotioncompensatedfourdconjugategradient.cxx │ └── rtkmotioncompensatedfourdconjugategradient.ggo ├── rtkorageometry │ ├── CMakeLists.txt │ ├── rtkorageometry.cxx │ ├── rtkorageometry.ggo │ └── rtkorageometry.py ├── rtkosem │ ├── CMakeLists.txt │ ├── rtkosem.cxx │ └── rtkosem.ggo ├── rtkoverlayphaseandshroud │ ├── CMakeLists.txt │ ├── rtkoverlayphaseandshroud.cxx │ └── rtkoverlayphaseandshroud.ggo ├── rtkprojectgeometricphantom │ ├── CMakeLists.txt │ ├── rtkprojectgeometricphantom.cxx │ ├── rtkprojectgeometricphantom.ggo │ └── rtkprojectgeometricphantom.py ├── rtkprojectionmatrix │ ├── CMakeLists.txt │ ├── rtkMatlabSparseMatrix.h │ ├── rtkMatlabSparseMatrix.hxx │ ├── rtkprojectionmatrix.cxx │ └── rtkprojectionmatrix.ggo ├── rtkprojections │ ├── CMakeLists.txt │ ├── rtkprojections.cxx │ ├── rtkprojections.ggo │ └── rtkprojections.py ├── rtkprojectors_group.py ├── rtkprojectors_section.ggo ├── rtkprojectshepploganphantom │ ├── CMakeLists.txt │ ├── rtkprojectshepploganphantom.cxx │ ├── rtkprojectshepploganphantom.ggo │ └── rtkprojectshepploganphantom.py ├── rtkregularizedconjugategradient │ ├── CMakeLists.txt │ ├── rtkregularizedconjugategradient.cxx │ └── rtkregularizedconjugategradient.ggo ├── rtksart │ ├── CMakeLists.txt │ ├── rtksart.cxx │ └── rtksart.ggo ├── rtkscatterglarecorrection │ ├── CMakeLists.txt │ ├── rtkscatterglarecorrection.cxx │ └── rtkscatterglarecorrection.ggo ├── rtkshowgeometry │ ├── README.md │ ├── rtkshowgeometry.py │ └── showgeometry.sh ├── rtksimulatedgeometry │ ├── CMakeLists.txt │ ├── rtksimulatedgeometry.cxx │ ├── rtksimulatedgeometry.ggo │ └── rtksimulatedgeometry.py ├── rtkspectraldenoiseprojections │ ├── CMakeLists.txt │ ├── rtkspectraldenoiseprojections.cxx │ └── rtkspectraldenoiseprojections.ggo ├── rtkspectralforwardmodel │ ├── CMakeLists.txt │ ├── rtkspectralforwardmodel.cxx │ └── rtkspectralforwardmodel.ggo ├── rtkspectralonestep │ ├── CMakeLists.txt │ ├── rtkspectralonestep.cxx │ └── rtkspectralonestep.ggo ├── rtkspectralrooster │ ├── CMakeLists.txt │ ├── rtkspectralrooster.cxx │ └── rtkspectralrooster.ggo ├── rtkspectralsimplexdecomposition │ ├── CMakeLists.txt │ ├── rtkspectralsimplexdecomposition.cxx │ └── rtkspectralsimplexdecomposition.ggo ├── rtksubselect │ ├── CMakeLists.txt │ ├── rtksubselect.cxx │ └── rtksubselect.ggo ├── rtktotalnuclearvariationdenoising │ ├── CMakeLists.txt │ ├── rtktotalnuclearvariationdenoising.cxx │ └── rtktotalnuclearvariationdenoising.ggo ├── rtktotalvariationdenoising │ ├── CMakeLists.txt │ ├── rtktotalvariationdenoising.cxx │ └── rtktotalvariationdenoising.ggo ├── rtktutorialapplication │ ├── CMakeLists.txt │ ├── rtktutorialapplication.cxx │ └── rtktutorialapplication.ggo ├── rtkvarianobigeometry │ ├── CMakeLists.txt │ ├── README.md │ ├── rtkvarianobigeometry.cxx │ ├── rtkvarianobigeometry.ggo │ └── rtkvarianobigeometry.py ├── rtkvarianprobeamgeometry │ ├── CMakeLists.txt │ ├── rtkvarianprobeamgeometry.cxx │ └── rtkvarianprobeamgeometry.ggo ├── rtkvectorconjugategradient │ ├── CMakeLists.txt │ ├── rtkvectorconjugategradient.cxx │ └── rtkvectorconjugategradient.ggo ├── rtkversion.py.in ├── rtkwaveletsdenoising │ ├── CMakeLists.txt │ ├── rtkwaveletsdenoising.cxx │ └── rtkwaveletsdenoising.ggo └── rtkxradgeometry │ ├── CMakeLists.txt │ ├── rtkxradgeometry.cxx │ └── rtkxradgeometry.ggo ├── cmake ├── FindGengetopt.cmake ├── GetGitRevisionDescription.cmake ├── GetGitRevisionDescription.cmake.in ├── Hooks │ ├── pre-commit │ └── pre-commit-style.bash ├── KWStyle │ ├── RTK.kws.xml │ ├── RTKHeader.h │ └── RTKOverwrite.txt └── rtkCompilerFlags.cmake ├── conf.py ├── documentation ├── Doxygen │ ├── CMakeLists.txt │ ├── DoxygenFooter.html │ ├── DoxygenHeader.html │ ├── DoxygenStyle.css │ ├── MainPage.dox │ ├── Modules.dox │ ├── doxygen.config.in │ ├── itkdoxygen.pl.in │ ├── itkgroup.pl │ ├── rtkThreeDCirculationProjectionGeometry.dox │ └── vxl_doxy.pl └── docs │ ├── 3d_time.md │ ├── CMakeLists.txt │ ├── ExternalData │ ├── AddNoise.png.sha512 │ ├── AdmmWavelets.png.sha512 │ ├── Admmtv.png.sha512 │ ├── Amsterdam.png.sha512 │ ├── Blurred.jpg.sha512 │ ├── Blurred_vs_mc.gif.sha512 │ ├── ConjugateGradient-2D.png.sha512 │ ├── ConjugateGradient-3D.png.sha512 │ ├── ConjugateGradient-Sinogram-2D.png.sha512 │ ├── ECG_phase.png.sha512 │ ├── Elekta.png.sha512 │ ├── Fdk-2D.png.sha512 │ ├── Fdk-3D.png.sha512 │ ├── GammexPhantom.png.sha512 │ ├── MotionMask.jpg.sha512 │ ├── Moving-Phantom-Sinogram.png.sha512 │ ├── POPI-Reconstruction.png.sha512 │ ├── POPI-Sinogram.png.sha512 │ ├── SheppLogan-Sinogram-2D.png.sha512 │ ├── SheppLogan-Sinogram-3D.png.sha512 │ ├── ShowGeometry.png.sha512 │ ├── Signal.jpg.sha512 │ ├── Thorax-Sinogram.png.sha512 │ ├── Thorax-fdk.png.sha512 │ ├── Thorax-visualisation.png.sha512 │ ├── Varian.png.sha512 │ ├── VarianProBeam.png.sha512 │ ├── VectorField.gif.sha512 │ └── shroud.png.sha512 │ ├── Geometry.md │ ├── Phantom.md │ ├── Projectors.md │ ├── README.md │ ├── Release.md │ ├── copy_and_fetch_sphinx_doc_files.cmake │ ├── requirements.txt │ └── rtk_3_migration_guide.md ├── examples ├── AddNoise │ ├── AddNoise.cxx │ ├── AddNoise.py │ ├── CMakeLists.txt │ └── README.md ├── ConjugateGradient │ ├── CMakeLists.txt │ ├── ConjugateGradient.cxx │ ├── ConjugateGradient.py │ └── README.md ├── FirstReconstruction │ ├── CMakeLists.txt │ ├── FirstCudaReconstruction.cxx │ ├── FirstCudaReconstruction.py │ ├── FirstReconstruction.cxx │ ├── FirstReconstruction.py │ └── README.md ├── GeometricPhantom │ ├── CMakeLists.txt │ ├── GeometricPhantom.cxx │ ├── GeometricPhantom.py │ └── README.md ├── InlineReconstruction │ ├── CMakeLists.txt │ ├── InlineReconstruction.cxx │ ├── InlineReconstruction.py │ └── README.md ├── README.md └── WaterPreCorrection │ ├── Profile.png.sha512 │ ├── README.md │ └── WaterPreCorrection.py ├── include ├── rtkADMMTotalVariationConeBeamReconstructionFilter.h ├── rtkADMMTotalVariationConeBeamReconstructionFilter.hxx ├── rtkADMMTotalVariationConjugateGradientOperator.h ├── rtkADMMTotalVariationConjugateGradientOperator.hxx ├── rtkADMMWaveletsConeBeamReconstructionFilter.h ├── rtkADMMWaveletsConeBeamReconstructionFilter.hxx ├── rtkADMMWaveletsConjugateGradientOperator.h ├── rtkADMMWaveletsConjugateGradientOperator.hxx ├── rtkAddMatrixAndDiagonalImageFilter.h ├── rtkAddMatrixAndDiagonalImageFilter.hxx ├── rtkAdditiveGaussianNoiseImageFilter.h ├── rtkAdditiveGaussianNoiseImageFilter.hxx ├── rtkAmsterdamShroudImageFilter.h ├── rtkAmsterdamShroudImageFilter.hxx ├── rtkAverageOutOfROIImageFilter.h ├── rtkAverageOutOfROIImageFilter.hxx ├── rtkBackProjectionImageFilter.h ├── rtkBackProjectionImageFilter.hxx ├── rtkBackwardDifferenceDivergenceImageFilter.h ├── rtkBackwardDifferenceDivergenceImageFilter.hxx ├── rtkBioscanGeometryReader.h ├── rtkBlockDiagonalMatrixVectorMultiplyImageFilter.h ├── rtkBlockDiagonalMatrixVectorMultiplyImageFilter.hxx ├── rtkBoellaardScatterCorrectionImageFilter.h ├── rtkBoellaardScatterCorrectionImageFilter.hxx ├── rtkBoxShape.h ├── rtkConditionalMedianImageFilter.h ├── rtkConditionalMedianImageFilter.hxx ├── rtkConjugateGradientConeBeamReconstructionFilter.h ├── rtkConjugateGradientConeBeamReconstructionFilter.hxx ├── rtkConjugateGradientGetP_kPlusOneImageFilter.h ├── rtkConjugateGradientGetP_kPlusOneImageFilter.hxx ├── rtkConjugateGradientGetR_kPlusOneImageFilter.h ├── rtkConjugateGradientGetR_kPlusOneImageFilter.hxx ├── rtkConjugateGradientGetX_kPlusOneImageFilter.h ├── rtkConjugateGradientGetX_kPlusOneImageFilter.hxx ├── rtkConjugateGradientImageFilter.h ├── rtkConjugateGradientImageFilter.hxx ├── rtkConjugateGradientOperator.h ├── rtkConjugateGradientOperator.hxx ├── rtkConstantImageSource.h ├── rtkConstantImageSource.hxx ├── rtkConvexShape.h ├── rtkCudaAverageOutOfROIImageFilter.h ├── rtkCudaAverageOutOfROIImageFilter.hcu ├── rtkCudaBackProjectionImageFilter.h ├── rtkCudaBackProjectionImageFilter.hcu ├── rtkCudaBackProjectionImageFilter.hxx ├── rtkCudaConjugateGradientImageFilter.h ├── rtkCudaConjugateGradientImageFilter.hcu ├── rtkCudaConjugateGradientImageFilter.hxx ├── rtkCudaConstantVolumeSeriesSource.h ├── rtkCudaConstantVolumeSeriesSource.hcu ├── rtkCudaConstantVolumeSource.h ├── rtkCudaConstantVolumeSource.hcu ├── rtkCudaCropImageFilter.h ├── rtkCudaCropImageFilter.hcu ├── rtkCudaCyclicDeformationImageFilter.h ├── rtkCudaCyclicDeformationImageFilter.hcu ├── rtkCudaDisplacedDetectorImageFilter.h ├── rtkCudaDisplacedDetectorImageFilter.hcu ├── rtkCudaFDKBackProjectionImageFilter.h ├── rtkCudaFDKBackProjectionImageFilter.hcu ├── rtkCudaFDKConeBeamReconstructionFilter.h ├── rtkCudaFDKWeightProjectionFilter.h ├── rtkCudaFDKWeightProjectionFilter.hcu ├── rtkCudaFFTProjectionsConvolutionImageFilter.h ├── rtkCudaFFTProjectionsConvolutionImageFilter.hcu ├── rtkCudaFFTProjectionsConvolutionImageFilter.hxx ├── rtkCudaFFTRampImageFilter.h ├── rtkCudaFirstOrderKernels.hcu ├── rtkCudaForwardProjectionImageFilter.h ├── rtkCudaForwardProjectionImageFilter.hcu ├── rtkCudaForwardProjectionImageFilter.hxx ├── rtkCudaForwardWarpImageFilter.h ├── rtkCudaForwardWarpImageFilter.hcu ├── rtkCudaInterpolateImageFilter.h ├── rtkCudaInterpolateImageFilter.hcu ├── rtkCudaIntersectBox.hcu ├── rtkCudaIterativeFDKConeBeamReconstructionFilter.h ├── rtkCudaLagCorrectionImageFilter.h ├── rtkCudaLagCorrectionImageFilter.hcu ├── rtkCudaLaplacianImageFilter.h ├── rtkCudaLaplacianImageFilter.hcu ├── rtkCudaLastDimensionTVDenoisingImageFilter.h ├── rtkCudaLastDimensionTVDenoisingImageFilter.hcu ├── rtkCudaParkerShortScanImageFilter.h ├── rtkCudaParkerShortScanImageFilter.hcu ├── rtkCudaPolynomialGainCorrectionImageFilter.h ├── rtkCudaPolynomialGainCorrectionImageFilter.hcu ├── rtkCudaRayCastBackProjectionImageFilter.h ├── rtkCudaRayCastBackProjectionImageFilter.hcu ├── rtkCudaScatterGlareCorrectionImageFilter.h ├── rtkCudaSplatImageFilter.h ├── rtkCudaSplatImageFilter.hcu ├── rtkCudaTotalVariationDenoisingBPDQImageFilter.h ├── rtkCudaTotalVariationDenoisingBPDQImageFilter.hcu ├── rtkCudaUtilities.hcu ├── rtkCudaWarpBackProjectionImageFilter.h ├── rtkCudaWarpBackProjectionImageFilter.hcu ├── rtkCudaWarpForwardProjectionImageFilter.h ├── rtkCudaWarpForwardProjectionImageFilter.hcu ├── rtkCudaWarpImageFilter.h ├── rtkCudaWarpImageFilter.hcu ├── rtkCudaWeidingerForwardModelImageFilter.h ├── rtkCudaWeidingerForwardModelImageFilter.hcu ├── rtkCudaWeidingerForwardModelImageFilter.hxx ├── rtkCyclicDeformationImageFilter.h ├── rtkCyclicDeformationImageFilter.hxx ├── rtkDCMImagXImageIO.h ├── rtkDCMImagXImageIOFactory.h ├── rtkDPExtractShroudSignalImageFilter.h ├── rtkDPExtractShroudSignalImageFilter.hxx ├── rtkDaubechiesWaveletsConvolutionImageFilter.h ├── rtkDaubechiesWaveletsConvolutionImageFilter.hxx ├── rtkDaubechiesWaveletsDenoiseSequenceImageFilter.h ├── rtkDaubechiesWaveletsDenoiseSequenceImageFilter.hxx ├── rtkDbf.h ├── rtkDePierroRegularizationImageFilter.h ├── rtkDePierroRegularizationImageFilter.hxx ├── rtkDeconstructImageFilter.h ├── rtkDeconstructImageFilter.hxx ├── rtkDeconstructSoftThresholdReconstructImageFilter.h ├── rtkDeconstructSoftThresholdReconstructImageFilter.hxx ├── rtkDenoisingBPDQImageFilter.h ├── rtkDenoisingBPDQImageFilter.hxx ├── rtkDigisensGeometryReader.h ├── rtkDigisensGeometryXMLFileReader.h ├── rtkDisplacedDetectorForOffsetFieldOfViewImageFilter.h ├── rtkDisplacedDetectorForOffsetFieldOfViewImageFilter.hxx ├── rtkDisplacedDetectorImageFilter.h ├── rtkDisplacedDetectorImageFilter.hxx ├── rtkDivergenceOfGradientConjugateGradientOperator.h ├── rtkDivergenceOfGradientConjugateGradientOperator.hxx ├── rtkDownsampleImageFilter.h ├── rtkDownsampleImageFilter.hxx ├── rtkDrawBoxImageFilter.h ├── rtkDrawBoxImageFilter.hxx ├── rtkDrawConeImageFilter.h ├── rtkDrawConeImageFilter.hxx ├── rtkDrawConvexImageFilter.h ├── rtkDrawConvexImageFilter.hxx ├── rtkDrawCubeImageFilter.h ├── rtkDrawCylinderImageFilter.h ├── rtkDrawCylinderImageFilter.hxx ├── rtkDrawEllipsoidImageFilter.h ├── rtkDrawEllipsoidImageFilter.hxx ├── rtkDrawGeometricPhantomImageFilter.h ├── rtkDrawGeometricPhantomImageFilter.hxx ├── rtkDrawQuadricImageFilter.h ├── rtkDrawQuadricImageFilter.hxx ├── rtkDrawSheppLoganFilter.h ├── rtkDrawSheppLoganFilter.hxx ├── rtkDualEnergyNegativeLogLikelihood.h ├── rtkEdfImageIO.h ├── rtkEdfImageIOFactory.h ├── rtkEdfRawToAttenuationImageFilter.h ├── rtkEdfRawToAttenuationImageFilter.hxx ├── rtkElektaSynergyGeometryReader.h ├── rtkElektaSynergyLookupTableImageFilter.h ├── rtkElektaSynergyLookupTableImageFilter.hxx ├── rtkElektaSynergyRawLookupTableImageFilter.h ├── rtkElektaSynergyRawLookupTableImageFilter.hxx ├── rtkElektaXVI5GeometryXMLFileReader.h ├── rtkExtractPhaseImageFilter.h ├── rtkExtractPhaseImageFilter.hxx ├── rtkFDKBackProjectionImageFilter.h ├── rtkFDKBackProjectionImageFilter.hxx ├── rtkFDKConeBeamReconstructionFilter.h ├── rtkFDKConeBeamReconstructionFilter.hxx ├── rtkFDKVarianceReconstructionFilter.h ├── rtkFDKVarianceReconstructionFilter.hxx ├── rtkFDKWarpBackProjectionImageFilter.h ├── rtkFDKWarpBackProjectionImageFilter.hxx ├── rtkFDKWeightProjectionFilter.h ├── rtkFDKWeightProjectionFilter.hxx ├── rtkFFTHilbertImageFilter.h ├── rtkFFTHilbertImageFilter.hxx ├── rtkFFTProjectionsConvolutionImageFilter.h ├── rtkFFTProjectionsConvolutionImageFilter.hxx ├── rtkFFTRampImageFilter.h ├── rtkFFTRampImageFilter.hxx ├── rtkFFTVarianceRampImageFilter.h ├── rtkFFTVarianceRampImageFilter.hxx ├── rtkFieldOfViewImageFilter.h ├── rtkFieldOfViewImageFilter.hxx ├── rtkForbildPhantomFileReader.h ├── rtkForwardDifferenceGradientImageFilter.h ├── rtkForwardDifferenceGradientImageFilter.hxx ├── rtkForwardProjectionImageFilter.h ├── rtkForwardProjectionImageFilter.hxx ├── rtkForwardWarpImageFilter.h ├── rtkForwardWarpImageFilter.hxx ├── rtkFourDConjugateGradientConeBeamReconstructionFilter.h ├── rtkFourDConjugateGradientConeBeamReconstructionFilter.hxx ├── rtkFourDROOSTERConeBeamReconstructionFilter.h ├── rtkFourDROOSTERConeBeamReconstructionFilter.hxx ├── rtkFourDReconstructionConjugateGradientOperator.h ├── rtkFourDReconstructionConjugateGradientOperator.hxx ├── rtkFourDSARTConeBeamReconstructionFilter.h ├── rtkFourDSARTConeBeamReconstructionFilter.hxx ├── rtkFourDToProjectionStackImageFilter.h ├── rtkFourDToProjectionStackImageFilter.hxx ├── rtkGeneralPurposeFunctions.h ├── rtkGeometricPhantom.h ├── rtkGetNewtonUpdateImageFilter.h ├── rtkGetNewtonUpdateImageFilter.hxx ├── rtkGgoArgsInfoManager.h ├── rtkGgoFunctions.h ├── rtkGlobalResourceProbe.h ├── rtkHilbertImageFilter.h ├── rtkHilbertImageFilter.hxx ├── rtkHisImageIO.h ├── rtkHisImageIOFactory.h ├── rtkHncImageIO.h ├── rtkHncImageIOFactory.h ├── rtkHndImageIO.h ├── rtkHndImageIOFactory.h ├── rtkHomogeneousMatrix.h ├── rtkI0EstimationProjectionFilter.h ├── rtkI0EstimationProjectionFilter.hxx ├── rtkIOFactories.h ├── rtkImagXGeometryReader.h ├── rtkImagXGeometryReader.hxx ├── rtkImagXImageIO.h ├── rtkImagXImageIOFactory.h ├── rtkImagXXMLFileReader.h ├── rtkImageToVectorImageFilter.h ├── rtkImageToVectorImageFilter.hxx ├── rtkImportImageFilter.h ├── rtkImportImageFilter.hxx ├── rtkInterpolatorWithKnownWeightsImageFilter.h ├── rtkInterpolatorWithKnownWeightsImageFilter.hxx ├── rtkIntersectionOfConvexShapes.h ├── rtkIterationCommands.h ├── rtkIterativeConeBeamReconstructionFilter.h ├── rtkIterativeConeBeamReconstructionFilter.hxx ├── rtkIterativeFDKConeBeamReconstructionFilter.h ├── rtkIterativeFDKConeBeamReconstructionFilter.hxx ├── rtkJosephBackAttenuatedProjectionImageFilter.h ├── rtkJosephBackAttenuatedProjectionImageFilter.hxx ├── rtkJosephBackProjectionImageFilter.h ├── rtkJosephBackProjectionImageFilter.hxx ├── rtkJosephForwardAttenuatedProjectionImageFilter.h ├── rtkJosephForwardAttenuatedProjectionImageFilter.hxx ├── rtkJosephForwardProjectionImageFilter.h ├── rtkJosephForwardProjectionImageFilter.hxx ├── rtkLUTbasedVariableI0RawToAttenuationImageFilter.h ├── rtkLUTbasedVariableI0RawToAttenuationImageFilter.hxx ├── rtkLagCorrectionImageFilter.h ├── rtkLagCorrectionImageFilter.hxx ├── rtkLaplacianImageFilter.h ├── rtkLaplacianImageFilter.hxx ├── rtkLastDimensionL0GradientDenoisingImageFilter.h ├── rtkLastDimensionL0GradientDenoisingImageFilter.hxx ├── rtkLookupTableImageFilter.h ├── rtkLookupTableImageFilter.hxx ├── rtkMacro.h ├── rtkMagnitudeThresholdImageFilter.h ├── rtkMagnitudeThresholdImageFilter.hxx ├── rtkMaskCollimationImageFilter.h ├── rtkMaskCollimationImageFilter.hxx ├── rtkMaximumIntensityProjectionImageFilter.h ├── rtkMechlemOneStepSpectralReconstructionFilter.h ├── rtkMechlemOneStepSpectralReconstructionFilter.hxx ├── rtkMotionCompensatedFourDConjugateGradientConeBeamReconstructionFilter.h ├── rtkMotionCompensatedFourDConjugateGradientConeBeamReconstructionFilter.hxx ├── rtkMotionCompensatedFourDROOSTERConeBeamReconstructionFilter.h ├── rtkMotionCompensatedFourDROOSTERConeBeamReconstructionFilter.hxx ├── rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h ├── rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.hxx ├── rtkMultiplyByVectorImageFilter.h ├── rtkMultiplyByVectorImageFilter.hxx ├── rtkNesterovUpdateImageFilter.h ├── rtkNesterovUpdateImageFilter.hxx ├── rtkOSEMConeBeamReconstructionFilter.h ├── rtkOSEMConeBeamReconstructionFilter.hxx ├── rtkOraGeometryReader.h ├── rtkOraImageIO.h ├── rtkOraImageIOFactory.h ├── rtkOraLookupTableImageFilter.h ├── rtkOraLookupTableImageFilter.hxx ├── rtkOraXMLFileReader.h ├── rtkParkerShortScanImageFilter.h ├── rtkParkerShortScanImageFilter.hxx ├── rtkPhaseGatingImageFilter.h ├── rtkPhaseGatingImageFilter.hxx ├── rtkPhaseReader.h ├── rtkPhasesToInterpolationWeights.h ├── rtkPolynomialGainCorrectionImageFilter.h ├── rtkPolynomialGainCorrectionImageFilter.hxx ├── rtkProgressCommands.h ├── rtkProjectGeometricPhantomImageFilter.h ├── rtkProjectGeometricPhantomImageFilter.hxx ├── rtkProjectionGeometry.h ├── rtkProjectionGeometry.hxx ├── rtkProjectionStackToFourDImageFilter.h ├── rtkProjectionStackToFourDImageFilter.hxx ├── rtkProjectionsDecompositionNegativeLogLikelihood.h ├── rtkProjectionsReader.h ├── rtkProjectionsReader.hxx ├── rtkProjectionsRegionConstIteratorRayBased.h ├── rtkProjectionsRegionConstIteratorRayBased.hxx ├── rtkProjectionsRegionConstIteratorRayBasedParallel.h ├── rtkProjectionsRegionConstIteratorRayBasedParallel.hxx ├── rtkProjectionsRegionConstIteratorRayBasedWithCylindricalPanel.h ├── rtkProjectionsRegionConstIteratorRayBasedWithCylindricalPanel.hxx ├── rtkProjectionsRegionConstIteratorRayBasedWithFlatPanel.h ├── rtkProjectionsRegionConstIteratorRayBasedWithFlatPanel.hxx ├── rtkQuadricShape.h ├── rtkRayBoxIntersectionImageFilter.h ├── rtkRayBoxIntersectionImageFilter.hxx ├── rtkRayConvexIntersectionImageFilter.h ├── rtkRayConvexIntersectionImageFilter.hxx ├── rtkRayEllipsoidIntersectionImageFilter.h ├── rtkRayEllipsoidIntersectionImageFilter.hxx ├── rtkRayQuadricIntersectionImageFilter.h ├── rtkRayQuadricIntersectionImageFilter.hxx ├── rtkReconstructImageFilter.h ├── rtkReconstructImageFilter.hxx ├── rtkReconstructionConjugateGradientOperator.h ├── rtkReconstructionConjugateGradientOperator.hxx ├── rtkReg1DExtractShroudSignalImageFilter.h ├── rtkReg1DExtractShroudSignalImageFilter.hxx ├── rtkReg23ProjectionGeometry.h ├── rtkRegularizedConjugateGradientConeBeamReconstructionFilter.h ├── rtkRegularizedConjugateGradientConeBeamReconstructionFilter.hxx ├── rtkReorderProjectionsImageFilter.h ├── rtkReorderProjectionsImageFilter.hxx ├── rtkResourceProbesCollector.h ├── rtkSARTConeBeamReconstructionFilter.h ├── rtkSARTConeBeamReconstructionFilter.hxx ├── rtkScatterGlareCorrectionImageFilter.h ├── rtkScatterGlareCorrectionImageFilter.hxx ├── rtkSchlomka2008NegativeLogLikelihood.h ├── rtkSelectOneProjectionPerCycleImageFilter.h ├── rtkSelectOneProjectionPerCycleImageFilter.hxx ├── rtkSeparableQuadraticSurrogateRegularizationImageFilter.h ├── rtkSeparableQuadraticSurrogateRegularizationImageFilter.hxx ├── rtkSheppLoganPhantom.h ├── rtkSheppLoganPhantomFilter.h ├── rtkSheppLoganPhantomFilter.hxx ├── rtkSignalToInterpolationWeights.h ├── rtkSimplexSpectralProjectionsDecompositionImageFilter.h ├── rtkSimplexSpectralProjectionsDecompositionImageFilter.hxx ├── rtkSingularValueThresholdImageFilter.h ├── rtkSingularValueThresholdImageFilter.hxx ├── rtkSoftThresholdImageFilter.h ├── rtkSoftThresholdImageFilter.hxx ├── rtkSoftThresholdTVImageFilter.h ├── rtkSoftThresholdTVImageFilter.hxx ├── rtkSpectralForwardModelImageFilter.h ├── rtkSpectralForwardModelImageFilter.hxx ├── rtkSplatWithKnownWeightsImageFilter.h ├── rtkSplatWithKnownWeightsImageFilter.hxx ├── rtkSubSelectFromListImageFilter.h ├── rtkSubSelectFromListImageFilter.hxx ├── rtkSubSelectImageFilter.h ├── rtkSubSelectImageFilter.hxx ├── rtkSumOfSquaresImageFilter.h ├── rtkSumOfSquaresImageFilter.hxx ├── rtkThreeDCircularProjectionGeometry.h ├── rtkThreeDCircularProjectionGeometryXMLFile.h ├── rtkThreeDCircularProjectionGeometryXMLFileReader.h ├── rtkThreeDCircularProjectionGeometryXMLFileWriter.h ├── rtkTotalNuclearVariationDenoisingBPDQImageFilter.h ├── rtkTotalNuclearVariationDenoisingBPDQImageFilter.hxx ├── rtkTotalVariationDenoiseSequenceImageFilter.h ├── rtkTotalVariationDenoiseSequenceImageFilter.hxx ├── rtkTotalVariationDenoisingBPDQImageFilter.h ├── rtkTotalVariationDenoisingBPDQImageFilter.hxx ├── rtkTotalVariationImageFilter.h ├── rtkTotalVariationImageFilter.hxx ├── rtkUnwarpSequenceConjugateGradientOperator.h ├── rtkUnwarpSequenceConjugateGradientOperator.hxx ├── rtkUnwarpSequenceImageFilter.h ├── rtkUnwarpSequenceImageFilter.hxx ├── rtkUpsampleImageFilter.h ├── rtkUpsampleImageFilter.hxx ├── rtkVarianObiGeometryReader.h ├── rtkVarianObiRawImageFilter.h ├── rtkVarianObiRawImageFilter.hxx ├── rtkVarianObiXMLFileReader.h ├── rtkVarianProBeamGeometryReader.h ├── rtkVarianProBeamXMLFileReader.h ├── rtkVectorImageToImageFilter.h ├── rtkVectorImageToImageFilter.hxx ├── rtkWarpFourDToProjectionStackImageFilter.h ├── rtkWarpFourDToProjectionStackImageFilter.hxx ├── rtkWarpProjectionStackToFourDImageFilter.h ├── rtkWarpProjectionStackToFourDImageFilter.hxx ├── rtkWarpSequenceImageFilter.h ├── rtkWarpSequenceImageFilter.hxx ├── rtkWatcherForResourceProbe.h ├── rtkWaterPrecorrectionImageFilter.h ├── rtkWaterPrecorrectionImageFilter.hxx ├── rtkWeidingerForwardModelImageFilter.h ├── rtkWeidingerForwardModelImageFilter.hxx ├── rtkXRadGeometryReader.h ├── rtkXRadImageIO.h ├── rtkXRadImageIOFactory.h ├── rtkXRadRawToAttenuationImageFilter.h ├── rtkXRadRawToAttenuationImageFilter.hxx ├── rtkXimImageIO.h ├── rtkXimImageIOFactory.h ├── rtkZengBackProjectionImageFilter.h ├── rtkZengBackProjectionImageFilter.hxx ├── rtkZengForwardProjectionImageFilter.h └── rtkZengForwardProjectionImageFilter.hxx ├── index.md ├── itk-module-init.cmake ├── itk-module.cmake ├── pyproject.toml ├── rtkConfiguration.h.in ├── src ├── CMakeLists.txt ├── rtkBioscanGeometryReader.cxx ├── rtkBoxShape.cxx ├── rtkConditionalMedianImageFilter.cxx ├── rtkConvexShape.cxx ├── rtkCudaAverageOutOfROIImageFilter.cu ├── rtkCudaAverageOutOfROIImageFilter.cxx ├── rtkCudaBackProjectionImageFilter.cu ├── rtkCudaConjugateGradientImageFilter.cu ├── rtkCudaConstantVolumeSeriesSource.cu ├── rtkCudaConstantVolumeSeriesSource.cxx ├── rtkCudaConstantVolumeSource.cu ├── rtkCudaConstantVolumeSource.cxx ├── rtkCudaCropImageFilter.cu ├── rtkCudaCropImageFilter.cxx ├── rtkCudaCyclicDeformationImageFilter.cu ├── rtkCudaCyclicDeformationImageFilter.cxx ├── rtkCudaDisplacedDetectorImageFilter.cu ├── rtkCudaDisplacedDetectorImageFilter.cxx ├── rtkCudaFDKBackProjectionImageFilter.cu ├── rtkCudaFDKBackProjectionImageFilter.cxx ├── rtkCudaFDKConeBeamReconstructionFilter.cxx ├── rtkCudaFDKWeightProjectionFilter.cu ├── rtkCudaFDKWeightProjectionFilter.cxx ├── rtkCudaFFTProjectionsConvolutionImageFilter.cu ├── rtkCudaFirstOrderKernels.cu ├── rtkCudaForwardProjectionImageFilter.cu ├── rtkCudaForwardWarpImageFilter.cu ├── rtkCudaForwardWarpImageFilter.cxx ├── rtkCudaInterpolateImageFilter.cu ├── rtkCudaInterpolateImageFilter.cxx ├── rtkCudaIterativeFDKConeBeamReconstructionFilter.cxx ├── rtkCudaLagCorrectionImageFilter.cu ├── rtkCudaLagCorrectionImageFilter.cxx ├── rtkCudaLaplacianImageFilter.cu ├── rtkCudaLaplacianImageFilter.cxx ├── rtkCudaLastDimensionTVDenoisingImageFilter.cu ├── rtkCudaLastDimensionTVDenoisingImageFilter.cxx ├── rtkCudaParkerShortScanImageFilter.cu ├── rtkCudaParkerShortScanImageFilter.cxx ├── rtkCudaPolynomialGainCorrectionImageFilter.cu ├── rtkCudaPolynomialGainCorrectionImageFilter.cxx ├── rtkCudaRayCastBackProjectionImageFilter.cu ├── rtkCudaRayCastBackProjectionImageFilter.cxx ├── rtkCudaSplatImageFilter.cu ├── rtkCudaSplatImageFilter.cxx ├── rtkCudaTotalVariationDenoisingBPDQImageFilter.cu ├── rtkCudaTotalVariationDenoisingBPDQImageFilter.cxx ├── rtkCudaUtilities.cu ├── rtkCudaWarpBackProjectionImageFilter.cu ├── rtkCudaWarpBackProjectionImageFilter.cxx ├── rtkCudaWarpForwardProjectionImageFilter.cu ├── rtkCudaWarpForwardProjectionImageFilter.cxx ├── rtkCudaWarpImageFilter.cu ├── rtkCudaWarpImageFilter.cxx ├── rtkCudaWeidingerForwardModelImageFilter.cu ├── rtkDCMImagXImageIO.cxx ├── rtkDCMImagXImageIOFactory.cxx ├── rtkDbf.cxx ├── rtkDigisensGeometryReader.cxx ├── rtkDigisensGeometryXMLFileReader.cxx ├── rtkEdfImageIO.cxx ├── rtkEdfImageIOFactory.cxx ├── rtkElektaSynergyGeometryReader.cxx ├── rtkElektaXVI5GeometryXMLFileReader.cxx ├── rtkForbildPhantomFileReader.cxx ├── rtkGeometricPhantom.cxx ├── rtkGlobalResourceProbe.cxx ├── rtkHisImageIO.cxx ├── rtkHisImageIOFactory.cxx ├── rtkHncImageIO.cxx ├── rtkHncImageIOFactory.cxx ├── rtkHndImageIO.cxx ├── rtkHndImageIOFactory.cxx ├── rtkIOFactories.cxx ├── rtkImagXImageIO.cxx ├── rtkImagXImageIOFactory.cxx ├── rtkImagXXMLFileReader.cxx ├── rtkIntersectionOfConvexShapes.cxx ├── rtkOraGeometryReader.cxx ├── rtkOraImageIO.cxx ├── rtkOraImageIOFactory.cxx ├── rtkOraXMLFileReader.cxx ├── rtkPhaseReader.cxx ├── rtkPhasesToInterpolationWeights.cxx ├── rtkQuadricShape.cxx ├── rtkReg23ProjectionGeometry.cxx ├── rtkResourceProbesCollector.cxx ├── rtkSheppLoganPhantom.cxx ├── rtkSignalToInterpolationWeights.cxx ├── rtkThreeDCircularProjectionGeometry.cxx ├── rtkThreeDCircularProjectionGeometryXMLFileReader.cxx ├── rtkThreeDCircularProjectionGeometryXMLFileWriter.cxx ├── rtkVarianObiGeometryReader.cxx ├── rtkVarianObiXMLFileReader.cxx ├── rtkVarianProBeamGeometryReader.cxx ├── rtkVarianProBeamXMLFileReader.cxx ├── rtkWatcherForResourceProbe.cxx ├── rtkXRadGeometryReader.cxx ├── rtkXRadImageIO.cxx ├── rtkXRadImageIOFactory.cxx ├── rtkXimImageIO.cxx └── rtkXimImageIOFactory.cxx ├── test ├── Baseline │ ├── AmsterdamShroud │ │ ├── Amsterdam.mha.sha512 │ │ └── Amsterdam_crop.mha.sha512 │ ├── Bioscan │ │ └── geometry.xml.sha512 │ ├── Digisens │ │ ├── attenuation.mha.sha512 │ │ └── geometry.xml.sha512 │ ├── ESRF │ │ └── attenuation.mha.sha512 │ ├── Elekta │ │ ├── attenuation.mha.sha512 │ │ ├── geometry.xml.sha512 │ │ └── geometry5.xml.sha512 │ ├── ImagX │ │ ├── attenuation.mha.sha512 │ │ ├── attenuationDCM.mha.sha512 │ │ └── geo.xml.sha512 │ ├── Laplacian │ │ └── Laplacian.mha.sha512 │ ├── Ora │ │ ├── attenuation.mha.sha512 │ │ ├── geometry.xml.sha512 │ │ ├── geometry_optitrack.xml.sha512 │ │ └── geometry_yawtilt.xml.sha512 │ ├── Spectral │ │ └── OneStep │ │ │ ├── newtonUpdate.mha.sha512 │ │ │ ├── out1.mha.sha512 │ │ │ └── out2.mha.sha512 │ ├── Varian │ │ ├── attenuation.mha.sha512 │ │ ├── attenuationHnc.mha.sha512 │ │ ├── attenuationProBeam.mha.sha512 │ │ ├── geometry.xml.sha512 │ │ ├── geometryHnc.xml.sha512 │ │ └── geometryProBeam.xml.sha512 │ └── XRad │ │ ├── attenuation.mha.sha512 │ │ └── geometry.xml.sha512 ├── CMakeLists.txt ├── Input │ ├── Bioscan │ │ └── bioscan.dcm.sha512 │ ├── Digisens │ │ ├── calibration.cal.sha512 │ │ └── ima0010.tif.sha512 │ ├── ESRF │ │ ├── dark.edf.sha512 │ │ ├── raw.edf.sha512 │ │ └── refHST0000.edf.sha512 │ ├── Elekta │ │ ├── FRAME.DBF.sha512 │ │ ├── IMAGE.DBF.sha512 │ │ ├── _Frames.xml.sha512 │ │ └── raw.his.sha512 │ ├── Forbild │ │ └── Thorax.sha512 │ ├── GeometricPhantom │ │ ├── Geometries.txt.sha512 │ │ ├── Geometries_Forbild.txt.sha512 │ │ ├── SheppLogan.txt.sha512 │ │ └── SheppLogan_forbild.txt.sha512 │ ├── ImagX │ │ ├── 1.dcm.sha512 │ │ ├── calibration.xml.sha512 │ │ ├── raw.raw.sha512 │ │ ├── raw.xml.sha512 │ │ └── room.xml.sha512 │ ├── Ora │ │ ├── 084183_20211217170607335.mhd.sha512 │ │ ├── 084183_20211217170607335.ora.xml.sha512 │ │ ├── 0_afterLog.mhd.sha512 │ │ ├── 0_afterLog.ora.xml.sha512 │ │ ├── 0_afterLog.raw.sha512 │ │ ├── 2006137_20220918183246810.mhd.sha512 │ │ └── 2006137_20220918183246810.ora.xml.sha512 │ ├── Phases │ │ ├── phases.txt.sha512 │ │ ├── phases_3projs.txt.sha512 │ │ └── phases_slow.txt.sha512 │ ├── Spectral │ │ ├── OneStep │ │ │ ├── binnedDetectorResponse.csv.sha512 │ │ │ ├── gradient.mha.sha512 │ │ │ ├── hessian.mha.sha512 │ │ │ ├── incident_spectrum_64_rows.mha.sha512 │ │ │ ├── materialAttenuations.csv.sha512 │ │ │ ├── materialProjections.mha.sha512 │ │ │ ├── no_vector_incident_spectrum_64_rows.mha.sha512 │ │ │ ├── photonCounts.mha.sha512 │ │ │ ├── projOfOnes.mha.sha512 │ │ │ └── spectrum.mha.sha512 │ │ ├── detector_response.mha.sha512 │ │ ├── incident_spectrum.mha.sha512 │ │ ├── material_attenuations.mha.sha512 │ │ └── no_vector_incident_spectrum.mha.sha512 │ ├── Varian │ │ ├── Proj_00000.xim.sha512 │ │ ├── acqui.xml.sha512 │ │ ├── acqui_probeam.xml.sha512 │ │ ├── image_00052.hnc.sha512 │ │ └── raw.hnd.sha512 │ └── XRad │ │ ├── SolidWater_HiGain1x1.header.sha512 │ │ ├── SolidWater_HiGain1x1_firstProj.header.sha512 │ │ ├── SolidWater_HiGain1x1_firstProj.img.sha512 │ │ ├── dark.header.sha512 │ │ ├── dark.img.sha512 │ │ ├── flat.header.sha512 │ │ └── flat.img.sha512 ├── rtkI0estimationtest.cxx ├── rtkMaximumIntensity.py ├── rtkOutputArgumentWrapping.py ├── rtkTest.h ├── rtkTestConfiguration.h.in ├── rtkTestReg23ProjectionGeometry.cxx ├── rtkadjointoperatorstest.cxx ├── rtkadmmtotalvariationtest.cxx ├── rtkadmmwaveletstest.cxx ├── rtkamsterdamshroudtest.cxx ├── rtkapplicationtest.py ├── rtkargsinfomanagertest.cxx ├── rtkbinningtest.cxx ├── rtkbioscantest.cxx ├── rtkconjugategradientreconstructiontest.cxx ├── rtkconjugategradienttest.cxx ├── rtkcroptest.cxx ├── rtkcudaraycastadjointoperatorstest.cxx ├── rtkcyclicdeformationtest.cxx ├── rtkcylindricaldetectorreconstructiontest.cxx ├── rtkdecomposespectralprojectionstest.cxx ├── rtkdigisenstest.cxx ├── rtkdisplaceddetectorcompcudatest.cxx ├── rtkdisplaceddetectorcompoffsettest.cxx ├── rtkdisplaceddetectortest.cxx ├── rtkdivergencetest.cxx ├── rtkdrawgeometricphantomtest.cxx ├── rtkedftest.cxx ├── rtkelektatest.cxx ├── rtkfbpparalleltest.cxx ├── rtkfdkprojweightcompcudatest.cxx ├── rtkfdktest.cxx ├── rtkforbildtest.cxx ├── rtkforwardattenuatedprojectiontest.cxx ├── rtkforwardprojectiontest.cxx ├── rtkfourdadjointoperatorstest.cxx ├── rtkfourdconjugategradienttest.cxx ├── rtkfourdroostertest.cxx ├── rtkfourdsarttest.cxx ├── rtkfovtest.cxx ├── rtkgaincorrectiontest.cxx ├── rtkgeometryclonetest.cxx ├── rtkgeometryfiletest.cxx ├── rtkgeometryfrommatrixtest.cxx ├── rtkgradienttest.cxx ├── rtkheadertestfooter.cxx ├── rtkhilbertfiltertest.cxx ├── rtkimagxtest.cxx ├── rtkimporttest.cxx ├── rtkinterpolatesplatadjointtest.cxx ├── rtkiterativefdktest.cxx ├── rtkl0gradientnormtest.cxx ├── rtklagcorrectiontest.cxx ├── rtklaplaciantest.cxx ├── rtklutbasedvarI0rawtoatttest.cxx ├── rtkluttest.cxx ├── rtkmaximumintensityprojectiontest.cxx ├── rtkmotioncompensatedfdktest.cxx ├── rtknewtonupdatetest.cxx ├── rtkoratest.cxx ├── rtkosemtest.cxx ├── rtkparallelgeometryfrommatrixtest.cxx ├── rtkprojectgeometricphantomtest.cxx ├── rtkquadrictest.cxx ├── rtkrampfiltertest.cxx ├── rtkrampfiltertest2.cxx ├── rtkregularizedconjugategradienttest.cxx ├── rtksarttest.cxx ├── rtkscatterglarefiltertest.cxx ├── rtkselectoneprojpercycletest.cxx ├── rtkshortscancompcudatest.cxx ├── rtkshortscantest.cxx ├── rtkspectralonesteptest.cxx ├── rtktestexamples.py ├── rtktotalvariationtest.cxx ├── rtkvariancereconstructiontest.cxx ├── rtkvariantest.cxx ├── rtkvectorimageconverterstest.cxx ├── rtkwarpfourdtoprojectionstacktest.cxx ├── rtkwarpprojectionstacktofourdtest.cxx ├── rtkwarptest.cxx ├── rtkwaterprecorrectiontest.cxx ├── rtkwaveletstest.cxx ├── rtkweidingerforwardmodeltest.cxx ├── rtkxradtest.cxx └── rtkzengforwardprojectiontest.cxx ├── utilities ├── SetupForDevelopment.sh ├── UploadTestData.py ├── clang-format.bash ├── gengetopt │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── acceptedvalues.cpp │ ├── acceptedvalues.h │ ├── argsdef.c │ ├── argsdef.h │ ├── cmdline.c │ ├── cmdline.ggo │ ├── cmdline.h │ ├── errorcodes.h │ ├── fileutils.cpp │ ├── fileutils.h │ ├── gengetopt.cc │ ├── gengetopt.h │ ├── getopt.c │ ├── getopt.h │ ├── getopt1.c │ ├── ggo_options.h │ ├── ggos.cpp │ ├── ggos.h │ ├── global_opts.h │ ├── globals.cpp │ ├── globals.h │ ├── gm.cc │ ├── gm.h │ ├── gm_utils.cpp │ ├── gm_utils.h │ ├── groups.h │ ├── my_map.h │ ├── my_sstream.h │ ├── my_string.h │ ├── parser.cc │ ├── parser.h │ ├── parser.yy │ ├── scanner.cc │ ├── skels │ │ ├── Makefile.am │ │ ├── c_source.cc │ │ ├── c_source.h │ │ ├── check_modes.cc │ │ ├── check_modes.h │ │ ├── clear_arg.cc │ │ ├── clear_arg.h │ │ ├── clear_given.cc │ │ ├── clear_given.h │ │ ├── copyright.cc │ │ ├── copyright.h │ │ ├── custom_getopt_gen.cc │ │ ├── custom_getopt_gen.h │ │ ├── dependant_option.cc │ │ ├── dependant_option.h │ │ ├── enum_decl.cc │ │ ├── enum_decl.h │ │ ├── exit_failure.cc │ │ ├── exit_failure.h │ │ ├── file_save.cc │ │ ├── file_save.h │ │ ├── file_save_multiple.cc │ │ ├── file_save_multiple.h │ │ ├── free_list.cc │ │ ├── free_list.h │ │ ├── free_multiple.cc │ │ ├── free_multiple.h │ │ ├── free_string.cc │ │ ├── free_string.h │ │ ├── generic_option.cc │ │ ├── generic_option.h │ │ ├── given_field.cc │ │ ├── given_field.h │ │ ├── group_counter.cc │ │ ├── group_counter.h │ │ ├── group_option.cc │ │ ├── group_option.h │ │ ├── handle_help.cc │ │ ├── handle_help.h │ │ ├── handle_version.cc │ │ ├── handle_version.h │ │ ├── header.cc │ │ ├── header.h │ │ ├── init_args_info.cc │ │ ├── init_args_info.h │ │ ├── multiple_fill_array.cc │ │ ├── multiple_fill_array.h │ │ ├── multiple_opt_list.cc │ │ ├── multiple_opt_list.h │ │ ├── option_arg.cc │ │ ├── option_arg.h │ │ ├── print_help_string.cc │ │ ├── print_help_string.h │ │ ├── required_option.cc │ │ ├── required_option.h │ │ ├── reset_group.cc │ │ ├── reset_group.h │ │ ├── update_given.cc │ │ └── update_given.h │ ├── yyerror.cc │ ├── yyerror.h │ └── yywrap.c └── lp_solve │ ├── CMakeLists.txt │ ├── README.txt │ ├── bfp │ ├── bfp_LUSOL │ │ ├── LUSOL │ │ │ ├── LUSOL_LGPL.txt │ │ │ ├── LUSOL_Overview.txt │ │ │ ├── LUSOL_README.txt │ │ │ ├── lusol.c │ │ │ ├── lusol.h │ │ │ ├── lusol1.c │ │ │ ├── lusol2.c │ │ │ ├── lusol6a.c │ │ │ ├── lusol6l0.c │ │ │ ├── lusol6u.c │ │ │ ├── lusol7a.c │ │ │ └── lusol8a.c │ │ ├── lp_LUSOL.c │ │ └── lp_LUSOL.h │ ├── lp_BFP.h │ ├── lp_BFP1.c │ └── lp_BFP2.c │ ├── colamd │ ├── colamd.c │ └── colamd.h │ ├── fortify.c │ ├── ini.c │ ├── ini.h │ ├── lp_Hash.c │ ├── lp_Hash.h │ ├── lp_MDO.c │ ├── lp_MDO.h │ ├── lp_MPS.c │ ├── lp_MPS.h │ ├── lp_SOS.c │ ├── lp_SOS.h │ ├── lp_bit.h │ ├── lp_crash.c │ ├── lp_crash.h │ ├── lp_explicit.h │ ├── lp_fortify.h │ ├── lp_lib.c │ ├── lp_lib.h │ ├── lp_matrix.c │ ├── lp_matrix.h │ ├── lp_mipbb.c │ ├── lp_mipbb.h │ ├── lp_params.c │ ├── lp_presolve.c │ ├── lp_presolve.h │ ├── lp_price.c │ ├── lp_price.h │ ├── lp_pricePSE.c │ ├── lp_pricePSE.h │ ├── lp_report.c │ ├── lp_report.h │ ├── lp_rlp.c │ ├── lp_rlp.h │ ├── lp_scale.c │ ├── lp_scale.h │ ├── lp_simplex.c │ ├── lp_simplex.h │ ├── lp_solveDLL.h │ ├── lp_types.h │ ├── lp_utils.c │ ├── lp_utils.h │ ├── lp_wlp.c │ ├── lp_wlp.h │ ├── lpkit.h │ ├── shared │ ├── commonlib.c │ ├── commonlib.h │ ├── mmio.c │ ├── mmio.h │ ├── myblas.c │ └── myblas.h │ ├── yacc_read.c │ └── yacc_read.h └── wrapping ├── CMakeLists.txt ├── ConvexShape.i ├── FieldOfViewImageFilter.i ├── __init_rtk__.py ├── itkContinuousIndexRTK.wrap ├── itkCovariantVectorRTK.wrap ├── itkCudaImageDataManagerRTK.wrap ├── itkCudaImageRTK.wrap ├── itkCudaImageToImageFilterRTK.wrap ├── itkCudaInPlaceImageFilterRTK.wrap ├── itkFixedArrayRTK.wrap ├── itkImageBaseRTK.wrap ├── itkImageDuplicatorRTK.wrap ├── itkImageFileReaderRTK.wrap ├── itkImageFileWriterRTK.wrap ├── itkImageRTK.wrap ├── itkImageRegionRTK.wrap ├── itkImageSourceRTK.wrap ├── itkImageToImageFilterRTK.wrap ├── itkInPlaceImageFilterRTK.wrap ├── itkMatrixRTK.wrap ├── itkPointRTK.wrap ├── itkPyBufferRTK.wrap ├── itkVariableLengthVectorRTK.wrap ├── itkVectorImageRTK.wrap ├── itkVectorRTK.wrap ├── itkWarpImageFilterRTK.wrap ├── rtkADMMTotalVariationConeBeamReconstructionFilter.wrap ├── rtkADMMWaveletsConeBeamReconstructionFilter.wrap ├── rtkAmsterdamShroudImageFilter.wrap ├── rtkBackProjectionImageFilter.wrap ├── rtkBioscanGeometryReader.wrap ├── rtkBoellaardScatterCorrectionImageFilter.wrap ├── rtkBoxShape.wrap ├── rtkConditionalMedianImageFilter.wrap ├── rtkConjugateGradientConeBeamReconstructionFilter.wrap ├── rtkConstantImageSource.wrap ├── rtkConvexShape.wrap ├── rtkCudaBackProjectionImageFilter.wrap ├── rtkCudaConstantVolumeSource.wrap ├── rtkCudaDisplacedDetectorImageFilter.wrap ├── rtkCudaFDKBackProjectionImageFilter.wrap ├── rtkCudaFDKConeBeamReconstructionFilter.wrap ├── rtkCudaFFTProjectionsConvolutionImageFilter.wrap ├── rtkCudaFFTRampImageFilter.wrap ├── rtkCudaForwardProjectionImageFilter.wrap ├── rtkCudaIterativeFDKConeBeamReconstructionFilter.wrap ├── rtkCudaParkerShortScanImageFilter.wrap ├── rtkCudaPolynomialGainCorrectionImageFilter.wrap ├── rtkCudaRayCastBackProjectionImageFilter.wrap ├── rtkCudaScatterGlareCorrectionImageFilter.wrap ├── rtkCudaSplatImageFilter.wrap ├── rtkCudaWarpForwardProjectionImageFilter.wrap ├── rtkCyclicDeformationImageFilter.wrap ├── rtkDCMImagXImageIO.wrap ├── rtkDPExtractShroudSignalImageFilter.notwrap ├── rtkDaubechiesWaveletsDenoiseSequenceImageFilter.wrap ├── rtkDeconstructSoftThresholdReconstructImageFilter.wrap ├── rtkDenoisingBPDQImageFilter.wrap ├── rtkDigisensGeometryReader.wrap ├── rtkDisplacedDetectorForOffsetFieldOfViewImageFilter.wrap ├── rtkDisplacedDetectorImageFilter.wrap ├── rtkDrawConvexImageFilter.wrap ├── rtkDrawEllipsoidImageFilter.wrap ├── rtkDrawGeometricPhantomImageFilter.wrap ├── rtkDrawQuadricImageFilter.wrap ├── rtkDrawSheppLoganFilter.wrap ├── rtkEdfImageIO.wrap ├── rtkEdfRawToAttenuationImageFilter.wrap ├── rtkElektaSynergyGeometryReader.wrap ├── rtkElektaSynergyRawLookupTableImageFilter.wrap ├── rtkElektaXVI5GeometryXMLFileReader.wrap ├── rtkExtractPhaseImageFilter.wrap ├── rtkExtras.py ├── rtkFDKBackProjectionImageFilter.wrap ├── rtkFDKConeBeamReconstructionFilter.wrap ├── rtkFDKVarianceReconstructionFilter.wrap ├── rtkFDKWarpBackProjectionImageFilter.wrap ├── rtkFDKWeightProjectionFilter.wrap ├── rtkFFTHilbertImageFilter.wrap ├── rtkFFTProjectionsConvolutionImageFilter.wrap ├── rtkFFTRampImageFilter.wrap ├── rtkFFTVarianceRampImageFilter.wrap ├── rtkFieldOfViewImageFilter.wrap ├── rtkForwardProjectionImageFilter.wrap ├── rtkForwardWarpImageFilter.wrap ├── rtkFourDConjugateGradientConeBeamReconstructionFilter.wrap ├── rtkFourDROOSTERConeBeamReconstructionFilter.wrap ├── rtkFourDSARTConeBeamReconstructionFilter.wrap ├── rtkFourDToProjectionStackImageFilter.wrap ├── rtkGeometricPhantom.wrap ├── rtkGlobalResourceProbe.wrap ├── rtkHilbertImageFilter.notwrap ├── rtkHisImageIO.wrap ├── rtkHncImageIO.wrap ├── rtkHndImageIO.wrap ├── rtkI0EstimationProjectionFilter.wrap ├── rtkImagXImageIO.wrap ├── rtkImageToVectorImageFilter.wrap ├── rtkIntersectionOfConvexShapes.wrap ├── rtkIterativeConeBeamReconstructionFilter.wrap ├── rtkIterativeFDKConeBeamReconstructionFilter.wrap ├── rtkJosephBackAttenuatedProjectionImageFilter.wrap ├── rtkJosephBackProjectionImageFilter.wrap ├── rtkJosephForwardAttenuatedProjectionImageFilter.wrap ├── rtkJosephForwardProjectionImageFilter.wrap ├── rtkLUTbasedVariableI0RawToAttenuationImageFilter.wrap ├── rtkLagCorrectionImageFilter.wrap ├── rtkLastDimensionL0GradientDenoisingImageFilter.wrap ├── rtkLookupTableImageFilter.wrap ├── rtkMaskCollimationImageFilter.wrap ├── rtkMaximumIntensityProjectionImageFilter.wrap ├── rtkMechlemOneStepSpectralReconstructionFilter.wrap ├── rtkMotionCompensatedFourDConjugateGradientConeBeamReconstructionFilter.wrap ├── rtkOSEMConeBeamReconstructionFilter.wrap ├── rtkOraGeometryReader.wrap ├── rtkOraImageIO.wrap ├── rtkParkerShortScanImageFilter.wrap ├── rtkPhaseGatingImageFilter.wrap ├── rtkPolynomialGainCorrectionImageFilter.wrap ├── rtkProjectGeometricPhantomImageFilter.wrap ├── rtkProjectionGeometry.wrap ├── rtkProjectionStackToFourDImageFilter.wrap ├── rtkProjectionsReader.wrap ├── rtkQuadricShape.wrap ├── rtkRayBoxIntersectionImageFilter.wrap ├── rtkRayConvexIntersectionImageFilter.wrap ├── rtkRayEllipsoidIntersectionImageFilter.wrap ├── rtkRayQuadricIntersectionImageFilter.wrap ├── rtkReg1DExtractShroudSignalImageFilter.notwrap ├── 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