├── .clang-format ├── .gitignore ├── .readthedocs.yaml ├── CMakeLists.txt ├── COPYING ├── Examples.cpp ├── README.md ├── RabbitFX.png ├── RabbitStat.cpp ├── RabbitStat2.cpp ├── TestCount.cpp ├── TestCount2.cpp ├── TestCount_SE.cpp ├── doc └── sphinx │ ├── API │ ├── api.rst │ ├── casestudy.rst │ ├── pipeline.png │ ├── rabbitio.png │ └── tutorial.rst │ ├── Doxyfile │ ├── RabbitFX.png │ ├── _static │ └── theme_overrides.css │ ├── conf.py │ ├── index.rst │ └── requirements.txt ├── io ├── Buffer.h ├── CMakeLists.txt ├── Common.h ├── DataPool.h ├── DataQueue.h ├── FastxChunk.h ├── FastxStream.cpp ├── FastxStream.h ├── FileReader.h ├── Formater.cpp ├── Formater.h ├── Globals.h ├── RabbitFX.h ├── Reference.h ├── utils.h └── verbos_Formater.cpp ├── pipeline.png └── thirdparty ├── CLI11.hpp └── robin_hood.h /.clang-format: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RabbitBio/RabbitFX/HEAD/.clang-format 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