├── .gitignore ├── .hgtags ├── CMakeLists.txt ├── COPYING ├── Doxyfile.in ├── INSTALLING ├── README.md ├── dependencies ├── eigen3 │ └── Eigen │ │ ├── Array │ │ ├── CMakeLists.txt │ │ ├── Cholesky │ │ ├── CholmodSupport │ │ ├── Core │ │ ├── Dense │ │ ├── Eigen │ │ ├── Eigen2Support │ │ ├── Eigenvalues │ │ ├── Geometry │ │ ├── Householder │ │ ├── IterativeLinearSolvers │ │ ├── Jacobi │ │ ├── LU │ │ ├── LeastSquares │ │ ├── MetisSupport │ │ ├── OrderingMethods │ │ ├── PaStiXSupport │ │ ├── PardisoSupport │ │ ├── QR │ │ ├── QtAlignedMalloc │ │ ├── SPQRSupport │ │ ├── SVD │ │ ├── Sparse │ │ ├── SparseCholesky │ │ ├── SparseCore │ │ ├── SparseLU │ │ ├── SparseQR │ │ ├── StdDeque │ │ ├── StdList │ │ ├── StdVector │ │ ├── SuperLUSupport │ │ ├── UmfPackSupport │ │ └── src │ │ ├── CMakeLists.txt │ │ ├── Cholesky │ │ ├── CMakeLists.txt │ │ ├── LDLT.h │ │ ├── LLT.h │ │ └── LLT_MKL.h │ │ ├── CholmodSupport │ │ ├── CMakeLists.txt │ │ └── CholmodSupport.h │ │ ├── Core │ │ ├── Array.h │ │ ├── ArrayBase.h │ │ ├── ArrayWrapper.h │ │ ├── Assign.h │ │ ├── Assign_MKL.h │ │ ├── BandMatrix.h │ │ ├── Block.h │ │ ├── BooleanRedux.h │ │ ├── CMakeLists.txt │ │ ├── CommaInitializer.h │ │ ├── CoreIterators.h │ │ ├── CwiseBinaryOp.h │ │ ├── CwiseNullaryOp.h │ │ ├── CwiseUnaryOp.h │ │ ├── CwiseUnaryView.h │ │ ├── DenseBase.h │ │ ├── DenseCoeffsBase.h │ │ ├── DenseStorage.h │ │ ├── Diagonal.h │ │ ├── DiagonalMatrix.h │ │ ├── DiagonalProduct.h │ │ ├── Dot.h │ │ ├── EigenBase.h │ │ ├── Flagged.h │ │ ├── ForceAlignedAccess.h │ │ ├── Functors.h │ │ ├── Fuzzy.h │ │ ├── GeneralProduct.h │ │ ├── GenericPacketMath.h │ │ ├── GlobalFunctions.h │ │ ├── IO.h │ │ ├── Map.h │ │ ├── MapBase.h │ │ ├── MathFunctions.h │ │ ├── Matrix.h │ │ ├── MatrixBase.h │ │ ├── NestByValue.h │ │ ├── NoAlias.h │ │ ├── NumTraits.h │ │ ├── PermutationMatrix.h │ │ ├── PlainObjectBase.h │ │ ├── ProductBase.h │ │ ├── Random.h │ │ ├── Redux.h │ │ ├── Ref.h │ │ ├── Replicate.h │ │ ├── ReturnByValue.h │ │ ├── Reverse.h │ │ ├── Select.h │ │ ├── SelfAdjointView.h │ │ ├── SelfCwiseBinaryOp.h │ │ ├── SolveTriangular.h │ │ ├── StableNorm.h │ │ ├── Stride.h │ │ ├── Swap.h │ │ ├── Transpose.h │ │ ├── Transpositions.h │ │ ├── TriangularMatrix.h │ │ ├── VectorBlock.h │ │ ├── VectorwiseOp.h │ │ ├── Visitor.h │ │ ├── arch │ │ │ ├── AltiVec │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Complex.h │ │ │ │ └── PacketMath.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Default │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Settings.h │ │ │ ├── NEON │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Complex.h │ │ │ │ └── PacketMath.h │ │ │ └── SSE │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Complex.h │ │ │ │ ├── MathFunctions.h │ │ │ │ └── PacketMath.h │ │ ├── products │ │ │ ├── CMakeLists.txt │ │ │ ├── CoeffBasedProduct.h │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ ├── GeneralMatrixMatrix.h │ │ │ ├── GeneralMatrixMatrixTriangular.h │ │ │ ├── GeneralMatrixMatrixTriangular_MKL.h │ │ │ ├── GeneralMatrixMatrix_MKL.h │ │ │ ├── GeneralMatrixVector.h │ │ │ ├── GeneralMatrixVector_MKL.h │ │ │ ├── Parallelizer.h │ │ │ ├── SelfadjointMatrixMatrix.h │ │ │ ├── SelfadjointMatrixMatrix_MKL.h │ │ │ ├── SelfadjointMatrixVector.h │ │ │ ├── SelfadjointMatrixVector_MKL.h │ │ │ ├── SelfadjointProduct.h │ │ │ ├── SelfadjointRank2Update.h │ │ │ ├── TriangularMatrixMatrix.h │ │ │ ├── TriangularMatrixMatrix_MKL.h │ │ │ ├── TriangularMatrixVector.h │ │ │ ├── TriangularMatrixVector_MKL.h │ │ │ ├── TriangularSolverMatrix.h │ │ │ ├── TriangularSolverMatrix_MKL.h │ │ │ └── TriangularSolverVector.h │ │ └── util │ │ │ ├── BlasUtil.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Constants.h │ │ │ ├── DisableStupidWarnings.h │ │ │ ├── ForwardDeclarations.h │ │ │ ├── MKL_support.h │ │ │ ├── Macros.h │ │ │ ├── Memory.h │ │ │ ├── Meta.h │ │ │ ├── NonMPL2.h │ │ │ ├── ReenableStupidWarnings.h │ │ │ ├── StaticAssert.h │ │ │ └── XprHelper.h │ │ ├── Eigen2Support │ │ ├── Block.h │ │ ├── CMakeLists.txt │ │ ├── Cwise.h │ │ ├── CwiseOperators.h │ │ ├── Geometry │ │ │ ├── AlignedBox.h │ │ │ ├── All.h │ │ │ ├── AngleAxis.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Hyperplane.h │ │ │ ├── ParametrizedLine.h │ │ │ ├── Quaternion.h │ │ │ ├── Rotation2D.h │ │ │ ├── RotationBase.h │ │ │ ├── Scaling.h │ │ │ ├── Transform.h │ │ │ └── Translation.h │ │ ├── LU.h │ │ ├── Lazy.h │ │ ├── LeastSquares.h │ │ ├── Macros.h │ │ ├── MathFunctions.h │ │ ├── Memory.h │ │ ├── Meta.h │ │ ├── Minor.h │ │ ├── QR.h │ │ ├── SVD.h │ │ ├── TriangularSolver.h │ │ └── VectorBlock.h │ │ ├── Eigenvalues │ │ ├── CMakeLists.txt │ │ ├── ComplexEigenSolver.h │ │ ├── ComplexSchur.h │ │ ├── ComplexSchur_MKL.h │ │ ├── EigenSolver.h │ │ ├── GeneralizedEigenSolver.h │ │ ├── GeneralizedSelfAdjointEigenSolver.h │ │ ├── HessenbergDecomposition.h │ │ ├── MatrixBaseEigenvalues.h │ │ ├── RealQZ.h │ │ ├── RealSchur.h │ │ ├── RealSchur_MKL.h │ │ ├── SelfAdjointEigenSolver.h │ │ ├── SelfAdjointEigenSolver_MKL.h │ │ └── Tridiagonalization.h │ │ ├── Geometry │ │ ├── AlignedBox.h │ │ ├── AngleAxis.h │ │ ├── CMakeLists.txt │ │ ├── EulerAngles.h │ │ ├── Homogeneous.h │ │ ├── Hyperplane.h │ │ ├── OrthoMethods.h │ │ ├── ParametrizedLine.h │ │ ├── Quaternion.h │ │ ├── Rotation2D.h │ │ ├── RotationBase.h │ │ ├── Scaling.h │ │ ├── Transform.h │ │ ├── Translation.h │ │ ├── Umeyama.h │ │ └── arch │ │ │ ├── CMakeLists.txt │ │ │ └── Geometry_SSE.h │ │ ├── Householder │ │ ├── BlockHouseholder.h │ │ ├── CMakeLists.txt │ │ ├── Householder.h │ │ └── HouseholderSequence.h │ │ ├── IterativeLinearSolvers │ │ ├── BasicPreconditioners.h │ │ ├── BiCGSTAB.h │ │ ├── CMakeLists.txt │ │ ├── ConjugateGradient.h │ │ ├── IncompleteLUT.h │ │ └── IterativeSolverBase.h │ │ ├── Jacobi │ │ ├── CMakeLists.txt │ │ └── Jacobi.h │ │ ├── LU │ │ ├── CMakeLists.txt │ │ ├── Determinant.h │ │ ├── FullPivLU.h │ │ ├── Inverse.h │ │ ├── PartialPivLU.h │ │ ├── PartialPivLU_MKL.h │ │ └── arch │ │ │ ├── CMakeLists.txt │ │ │ └── Inverse_SSE.h │ │ ├── MetisSupport │ │ ├── CMakeLists.txt │ │ └── MetisSupport.h │ │ ├── OrderingMethods │ │ ├── Amd.h │ │ ├── CMakeLists.txt │ │ ├── Eigen_Colamd.h │ │ └── Ordering.h │ │ ├── PaStiXSupport │ │ ├── CMakeLists.txt │ │ └── PaStiXSupport.h │ │ ├── PardisoSupport │ │ ├── CMakeLists.txt │ │ └── PardisoSupport.h │ │ ├── QR │ │ ├── CMakeLists.txt │ │ ├── ColPivHouseholderQR.h │ │ ├── ColPivHouseholderQR_MKL.h │ │ ├── FullPivHouseholderQR.h │ │ ├── HouseholderQR.h │ │ └── HouseholderQR_MKL.h │ │ ├── SPQRSupport │ │ ├── CMakeLists.txt │ │ └── SuiteSparseQRSupport.h │ │ ├── SVD │ │ ├── CMakeLists.txt │ │ ├── JacobiSVD.h │ │ ├── JacobiSVD_MKL.h │ │ └── UpperBidiagonalization.h │ │ ├── SparseCholesky │ │ ├── CMakeLists.txt │ │ ├── SimplicialCholesky.h │ │ └── SimplicialCholesky_impl.h │ │ ├── SparseCore │ │ ├── AmbiVector.h │ │ ├── CMakeLists.txt │ │ ├── CompressedStorage.h │ │ ├── ConservativeSparseSparseProduct.h │ │ ├── MappedSparseMatrix.h │ │ ├── SparseBlock.h │ │ ├── SparseColEtree.h │ │ ├── SparseCwiseBinaryOp.h │ │ ├── SparseCwiseUnaryOp.h │ │ ├── SparseDenseProduct.h │ │ ├── SparseDiagonalProduct.h │ │ ├── SparseDot.h │ │ ├── SparseFuzzy.h │ │ ├── SparseMatrix.h │ │ ├── SparseMatrixBase.h │ │ ├── SparsePermutation.h │ │ ├── SparseProduct.h │ │ ├── SparseRedux.h │ │ ├── SparseSelfAdjointView.h │ │ ├── SparseSparseProductWithPruning.h │ │ ├── SparseTranspose.h │ │ ├── SparseTriangularView.h │ │ ├── SparseUtil.h │ │ ├── SparseVector.h │ │ ├── SparseView.h │ │ └── TriangularSolver.h │ │ ├── SparseLU │ │ ├── CMakeLists.txt │ │ ├── SparseLU.h │ │ ├── SparseLUImpl.h │ │ ├── SparseLU_Memory.h │ │ ├── SparseLU_Structs.h │ │ ├── SparseLU_SupernodalMatrix.h │ │ ├── SparseLU_Utils.h │ │ ├── SparseLU_column_bmod.h │ │ ├── SparseLU_column_dfs.h │ │ ├── SparseLU_copy_to_ucol.h │ │ ├── SparseLU_gemm_kernel.h │ │ ├── SparseLU_heap_relax_snode.h │ │ ├── SparseLU_kernel_bmod.h │ │ ├── SparseLU_panel_bmod.h │ │ ├── SparseLU_panel_dfs.h │ │ ├── SparseLU_pivotL.h │ │ ├── SparseLU_pruneL.h │ │ └── SparseLU_relax_snode.h │ │ ├── SparseQR │ │ ├── CMakeLists.txt │ │ └── SparseQR.h │ │ ├── StlSupport │ │ ├── CMakeLists.txt │ │ ├── StdDeque.h │ │ ├── StdList.h │ │ ├── StdVector.h │ │ └── details.h │ │ ├── SuperLUSupport │ │ ├── CMakeLists.txt │ │ └── SuperLUSupport.h │ │ ├── UmfPackSupport │ │ ├── CMakeLists.txt │ │ └── UmfPackSupport.h │ │ ├── misc │ │ ├── CMakeLists.txt │ │ ├── Image.h │ │ ├── Kernel.h │ │ ├── Solve.h │ │ ├── SparseSolve.h │ │ └── blas.h │ │ └── plugins │ │ ├── ArrayCwiseBinaryOps.h │ │ ├── ArrayCwiseUnaryOps.h │ │ ├── BlockMethods.h │ │ ├── CMakeLists.txt │ │ ├── CommonCwiseBinaryOps.h │ │ ├── CommonCwiseUnaryOps.h │ │ ├── MatrixCwiseBinaryOps.h │ │ └── MatrixCwiseUnaryOps.h └── zlib-1.2.8 │ ├── adler32.c │ ├── compress.c │ ├── crc32.c │ ├── crc32.h │ ├── deflate.c │ ├── deflate.h │ ├── gzclose.c │ ├── gzguts.h │ ├── gzlib.c │ ├── gzread.c │ ├── gzwrite.c │ ├── infback.c │ ├── inffast.c │ ├── inffast.h │ ├── inffixed.h │ ├── inflate.c │ ├── inflate.h │ ├── inftrees.c │ ├── inftrees.h │ ├── trees.c │ ├── trees.h │ ├── uncompr.c │ ├── zconf.h │ ├── zlib.h │ ├── zutil.c │ └── zutil.h ├── resources ├── help.png ├── keyboard.png ├── pause.png ├── play.png ├── res.qrc ├── stop.png └── windings.png ├── scenes ├── fire.py ├── flip01_simple.py ├── flip02_surface.py ├── flip03_gen.py ├── flip04_adaptDt.py ├── flip05_nbflip.py ├── flip06_obstacle.py ├── freesurface.py ├── guiding_2d.py ├── guiding_3d01_low.py ├── guiding_3d02_high.py ├── karman.py ├── numpy_array_simple.py ├── patch_2d.py ├── patch_3d.py ├── plume_2d.py ├── plume_adaptDt.py ├── simpleplume.py ├── surfaceTension.py ├── surfaceTurbulence.py ├── turbulence.py ├── vortexsheets.py ├── waveEquation.py ├── waveletTurbulence.py └── waveletTurbulenceObs.py ├── source ├── commonkernels.h ├── conjugategrad.cpp ├── conjugategrad.h ├── cuda │ ├── buoyancy.cu │ ├── cudatools.h │ ├── curlnoise.cu │ ├── curlnoise.h │ ├── meshtools.cu │ ├── particle.cu │ └── turbulence.cu ├── edgecollapse.cpp ├── edgecollapse.h ├── fastmarch.cpp ├── fastmarch.h ├── fileio.cpp ├── fileio.h ├── fluidsolver.cpp ├── fluidsolver.h ├── general.cpp ├── general.h ├── grid.cpp ├── grid.h ├── grid4d.cpp ├── grid4d.h ├── gui │ ├── customctrl.cpp │ ├── customctrl.h │ ├── glwidget.cpp │ ├── glwidget.h │ ├── mainwindow.cpp │ ├── mainwindow.h │ ├── meshpainter.cpp │ ├── meshpainter.h │ ├── painter.cpp │ ├── painter.h │ ├── particlepainter.cpp │ ├── particlepainter.h │ ├── qtmain.cpp │ └── qtmain.h ├── kernel.cpp ├── kernel.h ├── levelset.cpp ├── levelset.h ├── mesh.cpp ├── mesh.h ├── movingobs.cpp ├── movingobs.h ├── multigrid.cpp ├── multigrid.h ├── noisefield.cpp ├── noisefield.h ├── nopython │ ├── manta.h │ ├── pclass.cpp │ └── pclass.h ├── particle.cpp ├── particle.h ├── patchAdv.cpp ├── patchAdv.h ├── plugin │ ├── advection.cpp │ ├── extforces.cpp │ ├── fire.cpp │ ├── flip.cpp │ ├── fluidguiding.cpp │ ├── initplugins.cpp │ ├── kepsilon.cpp │ ├── meshplugins.cpp │ ├── numpyconvert.cpp │ ├── patchSynthesis.cpp │ ├── patchSynthesis.h │ ├── pressure.cpp │ ├── surfaceturbulence.cpp │ ├── tfplugins.cpp │ ├── vortexplugins.cpp │ ├── waveletturbulence.cpp │ └── waves.cpp ├── preprocessor │ ├── code.cpp │ ├── code.h │ ├── codegen_kernel.cpp │ ├── codegen_python.cpp │ ├── main.cpp │ ├── merge.cpp │ ├── parse.cpp │ ├── prep.h │ ├── tokenize.cpp │ ├── tokenize.h │ ├── util.cpp │ └── util.h ├── pwrapper │ ├── manta.h │ ├── numpyWrap.cpp │ ├── numpyWrap.h │ ├── pclass.cpp │ ├── pclass.h │ ├── pconvert.cpp │ ├── pconvert.h │ ├── pvec3.cpp │ ├── pymain.cpp │ ├── pythonInclude.h │ ├── registry.cpp │ └── registry.h ├── python │ └── defines.py ├── shapes.cpp ├── shapes.h ├── test.cpp ├── timing.cpp ├── timing.h ├── turbulencepart.cpp ├── turbulencepart.h ├── util │ ├── defoElement.cpp │ ├── defoElement.h │ ├── integrator.h │ ├── interpol.h │ ├── interpolHigh.h │ ├── matrixbase.h │ ├── mcubes.h │ ├── quaternion.h │ ├── randomstream.h │ ├── rcmatrix.h │ ├── simpleimage.cpp │ ├── simpleimage.h │ ├── solvana.h │ ├── vector4d.cpp │ ├── vector4d.h │ ├── vectorbase.cpp │ └── vectorbase.h ├── vortexpart.cpp ├── vortexpart.h ├── vortexsheet.cpp └── vortexsheet.h ├── tensorflow ├── data │ └── readme.txt ├── example1_smoke_tiled │ ├── README.txt │ ├── manta_genSimData.py │ ├── manta_genSimData_pressure.py │ ├── runTests.sh │ ├── tf_genManySims.py │ ├── tf_model_np.py │ ├── tf_model_uni.py │ ├── tf_train.py │ ├── tf_train_pressure.py │ └── tilecreator.py ├── example2_liquid │ ├── README.txt │ ├── manta_flip.py │ ├── manta_gendata.py │ ├── manta_mlflip.py │ ├── tf_datasets.py │ ├── tf_network.py │ └── tf_train.py ├── example3_smoke_patch │ ├── MyCnnGraph.py │ ├── RecallEval.py │ ├── datasets.py │ ├── genPatchData.py │ ├── genSimData.py │ ├── genSimDataSpecial.py │ ├── libDesPack.py │ ├── models │ │ ├── model_2D │ │ │ ├── curl_cnn.ckpt │ │ │ └── den_cnn.ckpt │ │ └── model_3D │ │ │ ├── curl_cnn.ckpt │ │ │ └── den_cnn.ckpt │ ├── patch_2d.py │ ├── patch_3d.py │ ├── patch_repo.py │ └── trainPatchData.py └── tools │ ├── convautoenc.py │ ├── paramhelpers.py │ └── uniio.py └── tools ├── cmake └── FindTBB.cmake ├── getGitVersion.py ├── maya ├── AEbobjFluidObjectTemplate.mel ├── AEfluidGridObjectTemplate.mel ├── Makefile ├── README.txt ├── bobjFluidObject.cpp ├── bobjloader.mll ├── bobjloader.vcxproj ├── buildconfig.linux ├── buildconfig.osx ├── createBobjLoader.mel ├── createDensityLoader.mel ├── densityloader.cpp ├── densityloader.mll ├── densityloader.vcxproj └── mayaplugins.sln ├── testdata └── readme.txt ├── testdataDouble └── readme.txt └── tests ├── helperBuildInfo.py ├── helperGeneric.py ├── helperInclude.py ├── reader.py ├── runTests.py ├── test_0010_io.py ├── test_0011_inverted.py ├── test_0020_shapes.py ├── test_0030_gridop.py ├── test_0032_grid4dop.py ├── test_0040_interpol2d.py ├── test_0041_interpol3d.py ├── test_0042_interpol4d.py ├── test_0050_meshload.obj ├── test_0050_meshload.py ├── test_0100_psolve.py ├── test_0110_mgsolve.py ├── test_0500_pdataop.py ├── test_1010_plume2d.py ├── test_1020_uvs.py ├── test_1030_waveeq.py ├── 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