├── .github └── FUNDING.yml ├── Codes ├── ensure.py ├── evaluateModel.py ├── generateFeatures.py ├── main.py ├── read.py ├── runClassifiers.py ├── save.py ├── selectedImportantFeatures.py └── trainModel.py ├── Datasets ├── DNA │ ├── FASTA.txt │ ├── Label.txt │ ├── demoFASTA.txt │ └── demoLabel.txt ├── Protein │ ├── PDB1075_FASTA.txt │ ├── PDB1075_Label.txt │ ├── PDB186_independentFASTA.txt │ ├── PDB186_independentLabel.txt │ ├── astral95_refined.fa │ └── astral95_refined.txt └── RNA │ ├── FASTA.txt │ ├── Label.txt │ ├── independentFASTA.txt │ └── independentLabel.txt ├── LICENSE ├── PyFeat_Manual.pdf ├── README.md ├── RESULTS.md ├── _config.yml ├── roc1075.png ├── roc186.png ├── roc244.png └── roc70.png /.github/FUNDING.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/.github/FUNDING.yml -------------------------------------------------------------------------------- /Codes/ensure.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/ensure.py -------------------------------------------------------------------------------- /Codes/evaluateModel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/evaluateModel.py -------------------------------------------------------------------------------- /Codes/generateFeatures.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/generateFeatures.py -------------------------------------------------------------------------------- /Codes/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/main.py -------------------------------------------------------------------------------- /Codes/read.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/read.py -------------------------------------------------------------------------------- /Codes/runClassifiers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/runClassifiers.py -------------------------------------------------------------------------------- /Codes/save.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/save.py -------------------------------------------------------------------------------- /Codes/selectedImportantFeatures.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/selectedImportantFeatures.py -------------------------------------------------------------------------------- /Codes/trainModel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Codes/trainModel.py -------------------------------------------------------------------------------- /Datasets/DNA/FASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/DNA/FASTA.txt -------------------------------------------------------------------------------- /Datasets/DNA/Label.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/DNA/Label.txt -------------------------------------------------------------------------------- /Datasets/DNA/demoFASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/DNA/demoFASTA.txt -------------------------------------------------------------------------------- /Datasets/DNA/demoLabel.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/DNA/demoLabel.txt -------------------------------------------------------------------------------- /Datasets/Protein/PDB1075_FASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/PDB1075_FASTA.txt -------------------------------------------------------------------------------- /Datasets/Protein/PDB1075_Label.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/PDB1075_Label.txt -------------------------------------------------------------------------------- /Datasets/Protein/PDB186_independentFASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/PDB186_independentFASTA.txt -------------------------------------------------------------------------------- /Datasets/Protein/PDB186_independentLabel.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/PDB186_independentLabel.txt -------------------------------------------------------------------------------- /Datasets/Protein/astral95_refined.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/astral95_refined.fa -------------------------------------------------------------------------------- /Datasets/Protein/astral95_refined.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/Protein/astral95_refined.txt -------------------------------------------------------------------------------- /Datasets/RNA/FASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/RNA/FASTA.txt -------------------------------------------------------------------------------- /Datasets/RNA/Label.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/RNA/Label.txt -------------------------------------------------------------------------------- /Datasets/RNA/independentFASTA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/RNA/independentFASTA.txt -------------------------------------------------------------------------------- /Datasets/RNA/independentLabel.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/Datasets/RNA/independentLabel.txt -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/LICENSE -------------------------------------------------------------------------------- /PyFeat_Manual.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/PyFeat_Manual.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/README.md -------------------------------------------------------------------------------- /RESULTS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/RESULTS.md -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/_config.yml -------------------------------------------------------------------------------- /roc1075.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/roc1075.png -------------------------------------------------------------------------------- /roc186.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/roc186.png -------------------------------------------------------------------------------- /roc244.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/roc244.png -------------------------------------------------------------------------------- /roc70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RafsanjaniHub/PyFeat/HEAD/roc70.png --------------------------------------------------------------------------------