├── .DS_Store ├── .Rbuildignore ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md └── workflows │ └── rworkflows.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── .DS_Store ├── COLOC_corplot.R ├── COLOC_get_example_res.R ├── COLOC_get_res.R ├── COLOC_heatmap.R ├── COLOC_merge_res.R ├── COLOC_plot_data.R ├── COLOC_plot_loci.R ├── COLOC_report_summary.R ├── COLOC_run.R ├── COLOC_save_plot.R ├── check_coord_input.R ├── check_dim.R ├── check_maf.R ├── check_missing_queries.R ├── check_sample_size.R ├── choose_quant_method.R ├── construct_locus_name.R ├── data.R ├── eQTLcatalogue_annotate_tissues.R ├── eQTLcatalogue_example_queries.R ├── eQTLcatalogue_example_queries_local.R ├── eQTLcatalogue_fetch.R ├── eQTLcatalogue_get_header.R ├── eQTLcatalogue_iterate_fetch.R ├── eQTLcatalogue_list_datasets.R ├── eQTLcatalogue_query.R ├── eQTLcatalogue_search_metadata.R ├── ensembl_to_hgnc.R ├── fetch_from_eqtl_cat_API.R ├── fetch_restAPI.R ├── fetch_tabix.R ├── fix_ftp.R ├── hgnc_to_ensembl.R ├── make_split_path.R ├── max_file_size.R ├── merge_files.R ├── merge_gwas_qtl.R ├── message_parallel.R ├── messager.R ├── multithread_handler.R ├── multithread_optimizer.R ├── package.R ├── parse_gwas.qtl_path.R ├── reconstruct_file_names.R └── timeit.R ├── README.Rmd ├── README.md ├── catalogueR.Rproj ├── data ├── .DS_Store ├── eQTLcatalogue_header.rda └── meta.rda ├── inst ├── .DS_Store ├── CITATION ├── conda │ └── catalogueR.yml └── hex │ ├── .DS_Store │ ├── hex.png │ └── hexSticker.Rmd ├── man ├── COLOC_corplot.Rd ├── COLOC_get_example_res.Rd ├── COLOC_get_res.Rd ├── COLOC_heatmap.Rd ├── COLOC_merge_res.Rd ├── COLOC_plot_loci.Rd ├── COLOC_report_summary.Rd ├── COLOC_run.Rd ├── catalogueR-package.Rd ├── check_coord_input.Rd ├── check_dim.Rd ├── check_maf.Rd ├── eQTLcatalogue_annotate_tissues.Rd ├── eQTLcatalogue_example_queries.Rd ├── eQTLcatalogue_fetch.Rd ├── eQTLcatalogue_header.Rd ├── eQTLcatalogue_iterate_fetch.Rd ├── 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