├── .github └── workflows │ └── release.yaml ├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── conf.py │ ├── index.rst │ ├── install.rst │ ├── method.rst │ ├── method │ └── fig1.svg │ ├── pages │ └── api │ │ ├── API.rst │ │ ├── configuration_schemas.rst │ │ ├── functions.rst │ │ └── models.rst │ └── tutorial │ ├── data_preparation.rst │ ├── index.rst │ ├── introduction.rst │ └── model_tuning.rst ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── src └── move │ ├── __init__.py │ ├── __main__.py │ ├── analysis │ ├── __init__.py │ └── metrics.py │ ├── conf │ ├── __init__.py │ ├── data │ │ └── base_data.yaml │ ├── main.yaml │ ├── schema.py │ └── task │ │ ├── analyze_latent.yaml │ │ ├── identify_associations_bayes.yaml │ │ ├── identify_associations_ks.yaml │ │ ├── identify_associations_ttest.yaml │ │ ├── tune_model_reconstruction.yaml │ │ └── tune_model_stability.yaml │ ├── core │ ├── __init__.py │ ├── logging.py │ ├── seed.py │ └── typing.py │ ├── data │ ├── __init__.py │ ├── dataloaders.py │ ├── io.py │ ├── perturbations.py │ └── preprocessing.py │ ├── models │ ├── __init__.py │ └── vae.py │ ├── tasks │ ├── __init__.py │ ├── analyze_latent.py │ ├── encode_data.py │ ├── identify_associations.py │ └── tune_model.py │ ├── training │ ├── __init__.py │ └── training_loop.py │ └── visualization │ ├── __init__.py │ ├── dataset_distributions.py │ ├── feature_importance.py │ ├── latent_space.py │ ├── loss_curves.py │ ├── metrics.py │ ├── style.py │ └── vae_visualization.py ├── supplementary_files ├── 3D_latent_visualization.py ├── create_datasets.py ├── performance_evaluation.py └── visualize_vae.py └── tutorial ├── README.md ├── config ├── data │ ├── maize.yaml │ ├── random_continuous.yaml │ └── random_small.yaml ├── experiment │ ├── random_continuous.yaml │ ├── random_continuous__tune.yaml │ ├── random_small.yaml │ ├── random_small__tune_reconstruction.yaml │ └── random_small__tune_stability.yaml └── task │ ├── random_continuous__id_assoc_bayes.yaml │ ├── random_continuous__id_assoc_ks.yaml │ ├── random_continuous__id_assoc_ttest.yaml │ ├── random_continuous__latent.yaml │ ├── random_small__id_assoc_bayes.yaml │ ├── random_small__id_assoc_ttest.yaml │ └── random_small__latent.yaml ├── data ├── changes.continuous.txt ├── changes.small.txt ├── random.continuous.ids.txt ├── random.continuous.metagenomics.tsv ├── random.continuous.proteomics.tsv ├── random.small.drugs.tsv ├── random.small.ids.txt ├── random.small.metagenomics.tsv └── random.small.proteomics.tsv ├── maize └── maize_dataset.py └── notebooks ├── 01 Encoding data.ipynb ├── 02 Tune model.ipynb ├── 04 Latent space analysis.ipynb ├── 05 Identify associations.ipynb └── README.md /.github/workflows/release.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/.github/workflows/release.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/README.md -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/install.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/install.rst -------------------------------------------------------------------------------- /docs/source/method.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/method.rst -------------------------------------------------------------------------------- /docs/source/method/fig1.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/method/fig1.svg -------------------------------------------------------------------------------- /docs/source/pages/api/API.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/pages/api/API.rst -------------------------------------------------------------------------------- /docs/source/pages/api/configuration_schemas.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/pages/api/configuration_schemas.rst -------------------------------------------------------------------------------- /docs/source/pages/api/functions.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/pages/api/functions.rst -------------------------------------------------------------------------------- /docs/source/pages/api/models.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/pages/api/models.rst -------------------------------------------------------------------------------- /docs/source/tutorial/data_preparation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/tutorial/data_preparation.rst -------------------------------------------------------------------------------- /docs/source/tutorial/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/tutorial/index.rst -------------------------------------------------------------------------------- /docs/source/tutorial/introduction.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/tutorial/introduction.rst -------------------------------------------------------------------------------- /docs/source/tutorial/model_tuning.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/docs/source/tutorial/model_tuning.rst -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/setup.cfg -------------------------------------------------------------------------------- /src/move/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/__init__.py -------------------------------------------------------------------------------- /src/move/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/__main__.py -------------------------------------------------------------------------------- /src/move/analysis/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/analysis/__init__.py -------------------------------------------------------------------------------- /src/move/analysis/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/analysis/metrics.py -------------------------------------------------------------------------------- /src/move/conf/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/__init__.py -------------------------------------------------------------------------------- /src/move/conf/data/base_data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/data/base_data.yaml -------------------------------------------------------------------------------- /src/move/conf/main.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/main.yaml -------------------------------------------------------------------------------- /src/move/conf/schema.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/schema.py -------------------------------------------------------------------------------- /src/move/conf/task/analyze_latent.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/analyze_latent.yaml -------------------------------------------------------------------------------- /src/move/conf/task/identify_associations_bayes.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/identify_associations_bayes.yaml -------------------------------------------------------------------------------- /src/move/conf/task/identify_associations_ks.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/identify_associations_ks.yaml -------------------------------------------------------------------------------- /src/move/conf/task/identify_associations_ttest.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/identify_associations_ttest.yaml -------------------------------------------------------------------------------- /src/move/conf/task/tune_model_reconstruction.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/tune_model_reconstruction.yaml -------------------------------------------------------------------------------- /src/move/conf/task/tune_model_stability.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/conf/task/tune_model_stability.yaml -------------------------------------------------------------------------------- /src/move/core/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/core/__init__.py -------------------------------------------------------------------------------- /src/move/core/logging.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/core/logging.py -------------------------------------------------------------------------------- /src/move/core/seed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/core/seed.py -------------------------------------------------------------------------------- /src/move/core/typing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/core/typing.py -------------------------------------------------------------------------------- /src/move/data/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/data/__init__.py -------------------------------------------------------------------------------- /src/move/data/dataloaders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/data/dataloaders.py -------------------------------------------------------------------------------- /src/move/data/io.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/data/io.py -------------------------------------------------------------------------------- /src/move/data/perturbations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/data/perturbations.py -------------------------------------------------------------------------------- /src/move/data/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/data/preprocessing.py -------------------------------------------------------------------------------- /src/move/models/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ["VAE"] 2 | 3 | from move.models.vae import VAE 4 | -------------------------------------------------------------------------------- /src/move/models/vae.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/models/vae.py -------------------------------------------------------------------------------- /src/move/tasks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/tasks/__init__.py -------------------------------------------------------------------------------- /src/move/tasks/analyze_latent.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/tasks/analyze_latent.py -------------------------------------------------------------------------------- /src/move/tasks/encode_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/tasks/encode_data.py -------------------------------------------------------------------------------- /src/move/tasks/identify_associations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/tasks/identify_associations.py -------------------------------------------------------------------------------- /src/move/tasks/tune_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/tasks/tune_model.py -------------------------------------------------------------------------------- /src/move/training/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/move/training/training_loop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/training/training_loop.py -------------------------------------------------------------------------------- /src/move/visualization/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/__init__.py -------------------------------------------------------------------------------- /src/move/visualization/dataset_distributions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/dataset_distributions.py -------------------------------------------------------------------------------- /src/move/visualization/feature_importance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/feature_importance.py -------------------------------------------------------------------------------- /src/move/visualization/latent_space.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/latent_space.py -------------------------------------------------------------------------------- /src/move/visualization/loss_curves.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/loss_curves.py -------------------------------------------------------------------------------- /src/move/visualization/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/metrics.py -------------------------------------------------------------------------------- /src/move/visualization/style.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/style.py -------------------------------------------------------------------------------- /src/move/visualization/vae_visualization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/src/move/visualization/vae_visualization.py -------------------------------------------------------------------------------- /supplementary_files/3D_latent_visualization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/supplementary_files/3D_latent_visualization.py -------------------------------------------------------------------------------- /supplementary_files/create_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/supplementary_files/create_datasets.py -------------------------------------------------------------------------------- /supplementary_files/performance_evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/supplementary_files/performance_evaluation.py -------------------------------------------------------------------------------- /supplementary_files/visualize_vae.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/supplementary_files/visualize_vae.py -------------------------------------------------------------------------------- /tutorial/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/README.md -------------------------------------------------------------------------------- /tutorial/config/data/maize.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/data/maize.yaml -------------------------------------------------------------------------------- /tutorial/config/data/random_continuous.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/data/random_continuous.yaml -------------------------------------------------------------------------------- /tutorial/config/data/random_small.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/data/random_small.yaml -------------------------------------------------------------------------------- /tutorial/config/experiment/random_continuous.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/experiment/random_continuous.yaml -------------------------------------------------------------------------------- /tutorial/config/experiment/random_continuous__tune.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/experiment/random_continuous__tune.yaml -------------------------------------------------------------------------------- /tutorial/config/experiment/random_small.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/experiment/random_small.yaml -------------------------------------------------------------------------------- /tutorial/config/experiment/random_small__tune_reconstruction.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/experiment/random_small__tune_reconstruction.yaml -------------------------------------------------------------------------------- /tutorial/config/experiment/random_small__tune_stability.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/experiment/random_small__tune_stability.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_continuous__id_assoc_bayes.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_continuous__id_assoc_bayes.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_continuous__id_assoc_ks.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_continuous__id_assoc_ks.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_continuous__id_assoc_ttest.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_continuous__id_assoc_ttest.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_continuous__latent.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_continuous__latent.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_small__id_assoc_bayes.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_small__id_assoc_bayes.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_small__id_assoc_ttest.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_small__id_assoc_ttest.yaml -------------------------------------------------------------------------------- /tutorial/config/task/random_small__latent.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/config/task/random_small__latent.yaml -------------------------------------------------------------------------------- /tutorial/data/changes.continuous.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/changes.continuous.txt -------------------------------------------------------------------------------- /tutorial/data/changes.small.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/changes.small.txt -------------------------------------------------------------------------------- /tutorial/data/random.continuous.ids.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.continuous.ids.txt -------------------------------------------------------------------------------- /tutorial/data/random.continuous.metagenomics.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.continuous.metagenomics.tsv -------------------------------------------------------------------------------- /tutorial/data/random.continuous.proteomics.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.continuous.proteomics.tsv -------------------------------------------------------------------------------- /tutorial/data/random.small.drugs.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.small.drugs.tsv -------------------------------------------------------------------------------- /tutorial/data/random.small.ids.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.small.ids.txt -------------------------------------------------------------------------------- /tutorial/data/random.small.metagenomics.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.small.metagenomics.tsv -------------------------------------------------------------------------------- /tutorial/data/random.small.proteomics.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/data/random.small.proteomics.tsv -------------------------------------------------------------------------------- /tutorial/maize/maize_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/maize/maize_dataset.py -------------------------------------------------------------------------------- /tutorial/notebooks/01 Encoding data.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/notebooks/01 Encoding data.ipynb -------------------------------------------------------------------------------- /tutorial/notebooks/02 Tune model.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/notebooks/02 Tune model.ipynb -------------------------------------------------------------------------------- /tutorial/notebooks/04 Latent space analysis.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/notebooks/04 Latent space analysis.ipynb -------------------------------------------------------------------------------- /tutorial/notebooks/05 Identify associations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/notebooks/05 Identify associations.ipynb -------------------------------------------------------------------------------- /tutorial/notebooks/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RasmussenLab/MOVE/HEAD/tutorial/notebooks/README.md --------------------------------------------------------------------------------