├── .datalad
    ├── .gitattributes
    └── config
├── .gitattributes
├── requirements.txt
└── Dockerfile


/.datalad/.gitattributes:
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1 | config annex.largefiles=nothing
2 | 


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/.datalad/config:
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1 | [datalad "dataset"]
2 | 	id = fcb14c91-417b-413a-b343-b16da994f692
3 | 


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/.gitattributes:
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1 | * annex.backend=MD5E
2 | **/.git* annex.largefiles=nothing
3 | * annex.largefiles=((mimeencoding=binary)and(largerthan=0))
4 | 


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/requirements.txt:
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 1 | 
 2 | dipy
 3 | PyNomaly
 4 | p2j
 5 | antspynet==0.2.0
 6 | antspyx==0.3.7
 7 | antspymm==0.8.1
 8 | antspyt1w==0.8.5
 9 | siq==0.3.1
10 | 
11 | 


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/Dockerfile:
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 1 | FROM python:3.10-slim-buster
 2 | HEALTHCHECK NONE
 3 | 
 4 | RUN apt-get update && \
 5 |     apt-get install -y build-essential cmake libpng-dev pkg-config git
 6 | 
 7 | RUN useradd --create-home --shell /bin/bash dockeruser
 8 | USER dockeruser
 9 | WORKDIR /home/dockeruser
10 | 
11 | COPY requirements.txt .
12 | RUN pip install -r requirements.txt
13 | ENV PYTHONPATH "${PYTHONPATH}:/home/dockeruser/.local/bin"
14 | 
15 | RUN mkdir input
16 | RUN mkdir output
17 | 
18 | RUN python3 -c 'import ants; import antspyt1w; antspyt1w.get_data(  force_download=True )'
19 | RUN python3 -c 'import ants; import antspymm; antspymm.get_data(  force_download=True )'
20 | RUN python3 -c 'import ants; import antspyt1w; img=ants.image_read("~/.antspyt1w/28364-00000000-T1w-00.nii.gz"); antspyt1w.hierarchical( img, "/tmp/XXX", labels_to_register=None, is_test=True)'
21 | 
22 | 


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