16 |
17 | Would you like to help our research?
18 | 19 |Tap "JOIN THE STUDY" to learn about this research study run by OHSU and Sage 20 | Bionetworks or tap 21 | "JOIN LATER" to begin mapping
22 | 23 |
12 |
13 |
26 |
27 |
28 |
29 |
--------------------------------------------------------------------------------
/app/src/main/assets/html/learn_style.css:
--------------------------------------------------------------------------------
1 | @charset "UTF-8";
2 |
3 | body {
4 | font-family: sans-serif;
5 | font-style: normal;
6 | color:#000000;
7 | line-height:normal;
8 | font-weight:normal;
9 | }
10 |
11 | h3 {
12 | padding-top:12px;
13 | padding-bottom:12px;
14 | margin: 0px;
15 | }
16 |
17 | h5 {
18 | color:#009891;
19 | padding-top:16px;
20 | padding-bottom:16px;
21 | margin-top: 8px;
22 | margin-bottom: 0px;
23 | font-size:12pt;
24 | }
25 |
26 | p {
27 | font-size:12pt;
28 | padding-top:8px;
29 | padding-bottom:8px;
30 | margin: 0px;
31 | }
32 |
33 | p.a {
34 | padding-top:16px;
35 | padding-bottom:16px;
36 | }
37 |
38 | a, a:active {
39 | color:#255aa8;
40 | font-weight: bold;
41 | text-decoration: none;
42 | }
43 |
44 | .content {
45 | padding: 8px 16px 16px 50px;
46 | }
47 |
48 | img {
49 | display: block;
50 | padding: 0;
51 | margin: 0 auto;
52 | max-height: 100%;
53 | max-width: 100%;
54 | }
55 |
56 |
--------------------------------------------------------------------------------
/app/src/main/assets/json/learn.json:
--------------------------------------------------------------------------------
1 | {
2 | "items": [
3 | {
4 | "section_title": "Help",
5 | "row_items": [
6 | {
7 | "title": "FAQs",
8 | "details": "learn_faq"
9 | },
10 | {
11 | "title": "Support",
12 | "details": "learn_support"
13 | }
14 | ]
15 | },
16 | {
17 | "section_title": "Info",
18 | "row_items": [
19 | {
20 | "title": "OHSU War on Melanoma",
21 | "details": "ohsu"
22 | },
23 | {
24 | "title": "The Mole Mapper story",
25 | "details": "learn_story"
26 | },
27 | {
28 | "title": "Credits",
29 | "details": "learn_credits"
30 | }
31 | ]
32 | },
33 | {
34 | "section_title": "Feedback",
35 | "row_items": [
36 | {
37 | "title": "Help us improve!",
38 | "details": "feedback"
39 | }
40 | ]
41 | }
42 | ]
43 | }
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/ui/EmptyItemDecoration.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright (C) 2014 The Android Open Source Project
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | */
16 |
17 | package org.researchstack.molemapper.ui;
18 |
19 | import android.graphics.Color;
20 |
21 | public class EmptyItemDecoration extends ColorItemDecoration
22 | {
23 | public EmptyItemDecoration(int orientation, int size)
24 | {
25 | super(orientation, size, Color.TRANSPARENT, false);
26 | }
27 | }
28 |
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/bridge/UploadRequest.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper.bridge;
2 | import co.touchlab.squeaky.field.DatabaseField;
3 | import co.touchlab.squeaky.table.DatabaseTable;
4 |
5 | /**
6 | * Created by bradleymcdermott on 2/11/16.
7 | */
8 | @DatabaseTable
9 | public class UploadRequest
10 | {
11 | @DatabaseField(generatedId = true)
12 | public int id;
13 | @DatabaseField
14 | public String name;
15 | @DatabaseField
16 | public long contentLength;
17 | @DatabaseField
18 | public String contentMd5;
19 | @DatabaseField
20 | public String contentType;
21 | @DatabaseField(canBeNull = true)
22 | public String bridgeId;
23 | @DatabaseField
24 | public long uploadDate;
25 |
26 | public UploadRequest()
27 | {
28 |
29 | }
30 |
31 | public UploadRequest(String name, long contentLength, String contentMd5, String contentType)
32 | {
33 | this.name = name;
34 | this.contentLength = contentLength;
35 | this.contentMd5 = contentMd5;
36 | this.contentType = contentType;
37 | this.uploadDate = 0L;
38 | }
39 | }
40 |
--------------------------------------------------------------------------------
/app/src/main/assets/html/consent_section_html_study_survey.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
14 |
15 |
16 |
17 |
24 |
25 |
16 |
17 |
15 |
16 |
30 |
31 |
32 |
33 |
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/ui/StatusBarUtils.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper.ui;
2 | import android.content.Context;
3 | import android.view.View;
4 | import android.widget.RelativeLayout;
5 |
6 | public class StatusBarUtils
7 | {
8 | public static void adjustForTransparentStatusBar(View... views)
9 | {
10 | int statusBarHeight = getStatusBarHeight(views[0].getContext());
11 |
12 | for(View v : views)
13 | {
14 | RelativeLayout.MarginLayoutParams params = (RelativeLayout.MarginLayoutParams) v.getLayoutParams();
15 | params.topMargin = statusBarHeight;
16 | v.requestLayout();
17 | }
18 | }
19 |
20 | public static int getStatusBarHeight(Context context)
21 | {
22 | int result = 0;
23 | int resourceId = context.getResources()
24 | .getIdentifier("status_bar_height", "dimen", "android");
25 | if(resourceId > 0)
26 | {
27 | result = context.getResources().getDimensionPixelSize(resourceId);
28 | }
29 | else
30 | {
31 | result = (int) (context.getResources().getDisplayMetrics().density * 25 + .5f);
32 | }
33 | return result;
34 | }
35 | }
36 |
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/MoleMapperTaskProvider.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper;
2 | import android.content.Context;
3 |
4 | import org.researchstack.backbone.task.Task;
5 | import org.researchstack.molemapper.task.MoleMapperInitialTask;
6 | import org.researchstack.skin.TaskProvider;
7 | import org.researchstack.skin.task.ConsentTask;
8 | import org.researchstack.skin.task.SignInTask;
9 | import org.researchstack.skin.task.SignUpTask;
10 |
11 | import java.util.HashMap;
12 |
13 | public class MoleMapperTaskProvider extends TaskProvider
14 | {
15 | private HashMap
17 |
18 |
29 |
19 | We will ask you questions, such as your profession, zip code where you live,
20 | hair/skin color and your prior experience with melanoma. These questions will be
21 | used to evaluate your exposure to UV radiation and your melanoma risk. Each month we
22 | will also ask you questions about your sun exposure, your health and whether you had
23 | moles removed.
24 |
25 | You can skip any questions you do not wish to answer.
26 |
16 |
17 |
34 |
35 |
36 |
--------------------------------------------------------------------------------
/app/src/main/res/drawable/vic_mole_20dp.xml:
--------------------------------------------------------------------------------
1 |
2 |
18 |
19 |
33 |
20 | We will use strict information technology procedures to safeguard your data and
21 | prevent improper access.
22 |
23 | Your data will be stored by our vendor Sage Bionetworks and OHSU on separate secure
24 | Cloud servers in a manner that keeps your information as safe as possible and
25 | prevents unauthorized people from getting to your data.
26 |
27 | Your coded study data may be shared with researchers in other countries, including
28 | countries that may have different data protection laws than your country of
29 | residence.
30 |
15 |
16 |
35 |
36 |
37 |
--------------------------------------------------------------------------------
/app/src/main/assets/html/consent_section_html_study_task.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
17 |
18 |
34 |
19 | This study will NOT provide you with information related to your specific health or
20 | melanoma risks.
21 |
22 | This is NOT a medical diagnostic tool and isn’t designed to provide medical advice,
23 | professional diagnosis, opinion, treatment or healthcare services.
24 |
25 | You should not use the information provided in Mole Mapper or the study
26 | documentation in place of a consultation with your physician or health care
27 | provider.
28 |
29 | If you have any questions or concerns related to your health, you should seek the
30 | advice of a medical professional.
31 |
16 |
17 |
33 |
34 |
35 |
36 |
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/bridge/MeasurementData.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper.bridge;
2 | import org.researchstack.backbone.utils.FormatHelper;
3 | import org.researchstack.molemapper.models.Measurement;
4 | import org.researchstack.molemapper.models.Mole;
5 | import org.researchstack.molemapper.models.Zone;
6 |
7 | /**
8 | * Created by bradleymcdermott on 2/8/16.
9 | */
10 | public class MeasurementData
11 | {
12 | public static final String FILENAME = "measurementData.json";
13 | public static final String PHOTO_FILENAME = "measurementPhoto.jpg";
14 | public static final String ITEM = "moleMeasurement";
15 | public static final int REVISION = 2;
16 |
17 | public String measurementID;
18 | public String zoneID;
19 | public String moleID;
20 | public float xCoordinate;
21 | public float yCoordinate;
22 | public float diameter;
23 | public String dateMeasured;
24 |
25 | public MeasurementData(Zone zone, Mole mole, Measurement measurement)
26 | {
27 | this.measurementID = String.valueOf(measurement.id);
28 | this.moleID = String.valueOf(mole.id);
29 | this.zoneID = String.valueOf(zone.id);
30 | this.xCoordinate = measurement.measurementX;
31 | this.yCoordinate = measurement.measurementY;
32 | this.diameter = measurement.absoluteMoleDiameter;
33 | this.dateMeasured = FormatHelper.DEFAULT_FORMAT.format(measurement.date);
34 | }
35 | }
36 |
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/app/src/main/java/org/researchstack/molemapper/MoleMapperSettingsActivity.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper;
2 | import android.os.Bundle;
3 | import android.support.v7.app.ActionBar;
4 | import android.support.v7.widget.Toolbar;
5 | import android.view.MenuItem;
6 |
7 | import org.researchstack.molemapper.ui.fragment.MoleMapperSettingsFragment;
8 | import org.researchstack.skin.ui.BaseActivity;
9 |
10 | public class MoleMapperSettingsActivity extends BaseActivity
11 | {
12 | @Override
13 | protected void onCreate(Bundle savedInstanceState)
14 | {
15 | super.onCreate(savedInstanceState);
16 | setContentView(R.layout.rss_activity_fragment);
17 |
18 | Toolbar toolbar = (Toolbar) findViewById(R.id.toolbar);
19 | setSupportActionBar(toolbar);
20 |
21 | ActionBar actionBar = getSupportActionBar();
22 | actionBar.setDisplayHomeAsUpEnabled(true);
23 | actionBar.setDisplayShowTitleEnabled(true);
24 |
25 | if(savedInstanceState == null)
26 | {
27 | getSupportFragmentManager().beginTransaction()
28 | .add(R.id.container, new MoleMapperSettingsFragment())
29 | .commit();
30 | }
31 | }
32 |
33 |
34 | @Override
35 | public boolean onOptionsItemSelected(MenuItem item)
36 | {
37 | if(item.getItemId() == android.R.id.home)
38 | {
39 | onBackPressed();
40 | return true;
41 | }
42 |
43 | return super.onOptionsItemSelected(item);
44 | }
45 | }
46 |
--------------------------------------------------------------------------------
/app/src/main/assets/html/consent_section_html_withdraw.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
18 |
19 |
32 |
20 | This project could create the largest dataset of longitudinal tracking of moles and
21 | may provide insights into the progression of moles to melanoma.
22 |
23 | You may or may not personally benefit from this study. However, using the Mole
24 | Mapper app may help you monitor your moles over time. You will be able to share your
25 | mole photos and measurements as you wish, with your medical doctor and anyone you
26 | choose. You will also receive alerts about future melanoma educational and community
27 | events, free skin cancer screenings and/or skin cancer research opportunities from
28 | the War on Melanoma™ Community Registry.
29 |
15 |
16 |
36 |
37 |
38 |
39 |
40 |
--------------------------------------------------------------------------------
/app/src/main/res/layout/activity_mole_history.xml:
--------------------------------------------------------------------------------
1 |
2 |
17 |
18 |
35 |
19 | You may decide not to participate in the study or you may leave the study and/or the
20 | War on Melanoma™ Community Registry at any time.
21 |
22 | You can continue using the Mole Mapper app after you leave the study.
23 |
24 | If you withdraw from the study, we will stop collecting new data. The coded study
25 | data collected prior to withdrawing may still be used in the study, it will not be
26 | destroyed or deleted.
27 |
28 | The study team may also withdraw you from the study at any time for any reason.
29 |
30 | To withdraw from the Mole Mapper study and the War on Melanoma™ Community Registry,
31 | please use the ‘Leave Study’ button on the Profile page of the Mole Mapper app.
32 |
12 |
13 |
44 |
45 |
46 |
47 |
--------------------------------------------------------------------------------
/app/src/main/assets/html/consent_section_styles.css:
--------------------------------------------------------------------------------
1 | @charset "UTF-8";
2 |
3 | a:link, a:active, a:visited, a:active {
4 | font-family: sans-serif-medium;
5 | font-style: normal;
6 | font-size:11pt;
7 | text-decoration: none;
8 | color:#5a95cd;
9 | }
10 |
11 | img {
12 | display: inline;
13 | height: auto;
14 | max-width: 100%;
15 | }
16 |
17 | body {
18 | font-family: sans-serif;
19 | font-style: normal;
20 | font-size:11pt;
21 | color:#000000;
22 | padding-top:0px;
23 | padding-bottom:20px;
24 | }
25 |
26 | p, h2 {
27 | margin-top: 0;
28 | padding-right: 0px;
29 | padding-left: 0px;
30 | }
31 |
32 | h1 {
33 | font-family: sans-serif;
34 | font-style: normal;
35 | font-size:15.8pt;
36 | color:#000000;
37 | padding-top:0px;
38 | padding-bottom:0px;
39 | }
40 |
41 | .footer {
42 | background-color: #FFFFFF;
43 | width: 20%;
44 | margin: 0 auto;
45 | }
46 |
47 | .content {
48 | padding: 10px 10px 10px 10px;
49 | }
50 |
51 | .content ul, .content ol {
52 | padding: 0 10px 15px 15px;
53 | }
54 |
55 | IMG.displayed {
56 | display: block;
57 | margin-left: auto;
58 | margin-right: auto
59 | }
60 |
61 | bold {
62 | font-family:sans-serif-medium;
63 | font-size:16pt;
64 | color:#000000;
65 | line-height:normal;
66 | font-weight:normal;
67 | padding-top:0px;
68 | padding-bottom:0px;
69 | }
70 |
71 | ul, ol {
72 | font-family: sans-serif;
73 | font-style: normal;
74 | font-size:11pt;
75 | color:#000000;
76 | list-style-type: disk;
77 | list-style-position: inside;
78 |
79 | }
80 |
81 | .ExternalClass * {
82 | line-height: 100%
83 | }
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/app/src/main/assets/html/consent_section_html_dataprocessing.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
14 |
15 |
36 | 37 | Learn about the study first 38 | 39 | 40 | 41 |
42 |
43 | What is involved
16 | 17 |18 | To join this study, we will ask you to do: 19 | 20 |
-
21 |
- Consent to participate 22 |
- Register with your email address 23 |
- Answer questions about yourself 24 |
- Take pictures and measurements of your moles over time and share your mole data with 25 | the study team 26 | 27 |
36 | 37 | Learn about the study first 38 | 39 | 40 | 41 |
16 |
17 |
41 |
42 |
43 |
44 |
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/app/src/main/assets/html/learn_faq.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
18 |
19 |
40 | 20 | If you join this research study we will ask you to share your mole measurements 21 | collected using Mole Mapper. You will: 22 |
-
23 |
- Take pictures of your moles with the smartphone camera 24 |
- Map them to zones on the Mole Mapper body map 25 |
- Measure their size relative to a reference object like a coin photographed next 26 | to the mole. 27 | 28 |
31 | We will prompt you to re-measure your moles each month and send your updated data
32 | along with any information about new moles and whether you had any moles removed. If
33 | you have had a mole removed in a given month, we will ask you to take a photo and
34 | measurement of the biopsy site.
35 |
36 | You can track your moles at your convenience, track more or fewer moles or stop
37 | sharing your mole measurements at any time.
38 |
15 |
16 |
54 |
55 |
56 |
57 |
58 |
--------------------------------------------------------------------------------
/app/src/main/java/org/researchstack/molemapper/bridge/BridgeDataInput.java:
--------------------------------------------------------------------------------
1 | package org.researchstack.molemapper.bridge;
2 | import android.content.Context;
3 |
4 | import com.google.gson.Gson;
5 | import com.google.gson.GsonBuilder;
6 |
7 | import org.researchstack.backbone.StorageAccess;
8 |
9 | import java.io.ByteArrayInputStream;
10 | import java.io.FileNotFoundException;
11 | import java.io.InputStream;
12 |
13 | /**
14 | * Created by bradleymcdermott on 3/14/16.
15 | */
16 | public class BridgeDataInput
17 | {
18 | private static Gson gson = new GsonBuilder().serializeNulls().create();
19 | private Object gsonableObject;
20 | private Class clazz;
21 | private String inputFilename;
22 | String filename;
23 | String endDate;
24 |
25 | public BridgeDataInput(Object gsonableObject, Class clazz, String filename, String endDate)
26 | {
27 | this.gsonableObject = gsonableObject;
28 | this.clazz = clazz;
29 | this.filename = filename;
30 | this.endDate = endDate;
31 | }
32 |
33 | public BridgeDataInput(String inputFilename, String filename, String endDate)
34 | {
35 | this.inputFilename = inputFilename;
36 | this.filename = filename;
37 | this.endDate = endDate;
38 | }
39 |
40 | public InputStream getInputStream(Context context) throws FileNotFoundException
41 | {
42 | if(gsonableObject != null)
43 | {
44 | return new ByteArrayInputStream(gson.toJson(gsonableObject, clazz).getBytes());
45 | }
46 | else
47 | {
48 | return new ByteArrayInputStream(StorageAccess.getInstance()
49 | .getFileAccess()
50 | .readData(context, inputFilename));
51 | }
52 | }
53 | }
54 |
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/app/src/main/res/values/colors.xml:
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1 |
2 |
17 |
18 |
52 |
53 | 19 | Frequently asked questions 20 |
21 | 22 |23 | What should I be looking for or concerned about? 24 |
25 | 26 |27 | Check out the National Cancer Institute’s guide to moles. 28 |
29 | 30 |31 | SEE THE GUIDE 32 |
33 | 34 |35 | Does this app tell me if I have melanoma? 36 |
37 | 38 |39 | This app is designed for self-tracking to help 40 | you monitor the size, shape, and color of your 41 | moles. This app does not make any claim to 42 | detect, diagnose, or treat any skin condition. 43 | 44 | Any data stored within the app is for personal 45 | use only. We encourage you to share your 46 | photos and measurements with a licensed 47 | professional and refer to their professional 48 | opinion. 49 |
50 | 51 |
16 |
17 |
38 |
39 |
40 |
41 |
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/app/src/main/assets/html/learn_credits.html:
--------------------------------------------------------------------------------
1 |
3 |
4 |
5 |
6 |
7 |
8 |
18 | This study involves answering survey questions and sending mole measurements and photos
19 | that you have taken.
20 |
21 | We will send notices on your phone to re-measure your tracked moles every month and send 22 | your updated data along with any information about new moles and whether you had any 23 | moles removed. 24 |
25 | The initial survey may take 5-10 minutes, and the follow-up surveys are expected to take 26 | about 1 minute. Measuring a mole may take 1-2 minutes per mole. You can stop and restart 27 | where you left off at any time. 28 |
29 | For most people, participating in this study will take no more than 20 minutes per 30 | month. You can adjust your level of participation, as you desire. The number of moles 31 | you track and how often you track your moles is entirely up to you. 32 |
33 | Transmitting data collected in this study may count against your existing mobile data 34 | plan. You may configure the application to only use WiFi connections to limit the impact 35 | this data collection has on your data plan. 36 |
37 | 21 | We will send notices on your phone to re-measure your tracked moles every month and send 22 | your updated data along with any information about new moles and whether you had any 23 | moles removed. 24 |
25 | The initial survey may take 5-10 minutes, and the follow-up surveys are expected to take 26 | about 1 minute. Measuring a mole may take 1-2 minutes per mole. You can stop and restart 27 | where you left off at any time. 28 |
29 | For most people, participating in this study will take no more than 20 minutes per 30 | month. You can adjust your level of participation, as you desire. The number of moles 31 | you track and how often you track your moles is entirely up to you. 32 |
33 | Transmitting data collected in this study may count against your existing mobile data 34 | plan. You may configure the application to only use WiFi connections to limit the impact 35 | this data collection has on your data plan. 36 |
15 |
16 |
64 |
65 |
66 |
67 |
68 |
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/app/src/main/assets/html/consent_section_html_datause.html:
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1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
17 |
18 |
62 |
63 | 19 | Credits 20 |
21 | 22 |23 | Design & Development 24 |
25 | 26 |27 | touchlab 28 | America's Android First Development & Design Shop 29 | Thank you to Wojciech Dziemianczyk & Brad McDermott for your great work on development, 30 | Liam Spradlin for his wonderful design, and Justin Mancinelli for project managing. 31 |
32 | 33 |34 | Design elements from David Reese, Steve Salgado, and Chris Webster. 35 |
36 | 37 |Mole Mapper Contributors
38 | 39 |40 | Dan Webster 41 | NCI Postdoc 42 | Founder and Lead Developer of MoleMapper.org 44 |
45 | 46 |47 | Ron West 48 | Developer 49 |
50 | 51 |52 | Tracy Petrie 53 | Product Manager 54 |
55 | 56 |57 | Michael Carroll 58 | Technologist-in-Residence at Cornell Tech 59 |
60 | 61 |
14 |
15 |
36 |
37 |
38 |
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/app/src/main/assets/html/consent_section_html_withdrawing.html:
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1 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
16 | Your un-named and coded study data (the answers you provide on surveys and your mole
17 | data (photos, location, size) will be combined with the similarly de-identified data
18 | from other study participants.
19 |
20 | By analyzing the data from many Mole Mapper app users we hope to better understand the 21 | variation in mole growth and cancer risks, and whether a mobile device can help people 22 | measure moles accurately and manage skin health. 23 |
24 | For example, airline pilots and flight crew are about 2 times more likely to develop 25 | melanoma. But does this also mean that they have 2 times more moles, or experience more 26 | dynamic mole changes that can be caught early? Large, combined data sets are necessary 27 | to answer these types of questions. 28 |
29 | The OHSU study team may query the data to identify and re-contact people with certain 30 | mole characteristics, and invite them to join specific melanoma-related opportunity or 31 | events that may be of interest to them through the War on Melanoma Community Registry. 32 |
33 | Your information will not be used for commercial advertising. 34 |
35 | 20 | By analyzing the data from many Mole Mapper app users we hope to better understand the 21 | variation in mole growth and cancer risks, and whether a mobile device can help people 22 | measure moles accurately and manage skin health. 23 |
24 | For example, airline pilots and flight crew are about 2 times more likely to develop 25 | melanoma. But does this also mean that they have 2 times more moles, or experience more 26 | dynamic mole changes that can be caught early? Large, combined data sets are necessary 27 | to answer these types of questions. 28 |
29 | The OHSU study team may query the data to identify and re-contact people with certain 30 | mole characteristics, and invite them to join specific melanoma-related opportunity or 31 | events that may be of interest to them through the War on Melanoma Community Registry. 32 |
33 | Your information will not be used for commercial advertising. 34 |
15 |
16 |
41 |
42 |
43 |
44 |
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/app/src/main/res/layout/fragment_mole_dashboard.xml:
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1 |
2 |
17 |
18 |
40 |
19 | We take great care to protect your information, however there is a slight risk of
20 | loss of privacy. This risk is low because we separate your account information
21 | (name, email, contact information, etc.) from the study data. Only key members of
22 | the study team and some IT staff will have the key to associate your coded study
23 | data to your name and account information.
24 |
25 | However, certain skin features like tattoos or birthmarks may be unique to you and
26 | enable your re-identification. So even though your name is kept separate from your
27 | coded study data, it is possible that someone could still figure out your identity.
28 | To reduce this risk we recommend photographing moles at close range (6 inches from
29 | skin surface) to minimize capture of secondary identifiable skin features. Further,
30 | we will attempt to review and remove from the study dataset all photos that we
31 | consider identifiable or inappropriate for broad sharing with the research
32 | community.
33 |
34 | The risk to privacy and confidentiality should be considered before participating in
35 | the study.
36 |
37 |
14 |
15 |
53 |
54 |
55 |
56 |
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/app/src/main/res/layout/item_mole_survey.xml:
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1 |
2 |
16 |
17 |
51 |
52 | 18 | Our story 19 |
20 | 21 |22 | A few years ago, I met and married a woman who means everything to me. She also has 23 | every risk factor for melanoma, an aggressive and deadly cancer that can result from 24 | changes in your moles. 25 |
26 | 27 |28 | The earlier you detect melanoma, the better the outcome. And while my wife regularly 29 | goes to a dermatologist to check her moles, I wanted her to have a tool to map and 30 | measure them on her own. 31 |
32 | 33 |34 | During my PhD, I studied melanoma biology in the lab and by night worked to create 35 | the 36 | app that you have in your hand now. In partnership with OHSU and Sage Bionetworks, 37 | this 38 | app can not only help you track your own moles, but now allows you to contribute 39 | your 40 | data to a research effort that aims to better understand melanoma risk. I hope Mole 41 | Mapper makes being vigilant about your health a bit more enjoyable. 42 |
43 | 44 |45 | Happy Mapping, 46 | 47 | Dan E. Webster 48 |
49 | 50 |
16 |
17 |
44 |
45 |
46 |
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/app/src/main/java/org/researchstack/molemapper/bridge/Followup.java:
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1 | package org.researchstack.molemapper.bridge;
2 | import org.researchstack.backbone.result.StepResult;
3 | import org.researchstack.backbone.result.TaskResult;
4 | import org.researchstack.backbone.utils.FormatHelper;
5 | import org.researchstack.molemapper.task.FollowupTask;
6 |
7 | import java.util.Collection;
8 |
9 | /**
10 | * Created by bradleymcdermott on 2/11/16.
11 | */
12 | public class Followup
13 | {
14 | public static final String FILENAME = "followup.json";
15 | public static final String ITEM = "followup";
16 | public static final int REVISION = 1;
17 |
18 | public Integer sunburn;
19 | public Integer moleRemoved;
20 | public Integer sunscreen;
21 | public Integer sick;
22 | public Integer tan;
23 | public String date;
24 |
25 | public Followup(TaskResult taskResult)
26 | {
27 | Collection
18 | Your privacy is important to us.
19 |
20 | The data collected through the app will be encrypted on the phone. 21 |
22 | We will separate your account information (name, email, contact information, etc.) from 23 | the study data (the responses to surveys, the mole pictures and the mole measurements). 24 | The metadata will consist of your responses to survey and mole measurements only. No 25 | mole pictures will be included in the metadata. 26 |
27 | We will use a random code instead of your name on all study data. This code cannot be 28 | used to directly re-identify you. Information about the code will be kept in a separate 29 | secure system. Only key personnel from the study team may connect your study data to 30 | your name and account information. 31 |
32 | Sancy Leachman, MD. PhD, is leading the study teams for both the Mole Mapper study and 33 | the War on Melanoma™ Community Registry. 34 |
35 | The photos you take using Mole Mapper are stored within the app, not on your phone 36 | photostream or other cloud storage system. 37 |
38 | We will not access your personal phone contacts, other applications, personal photos, 39 | texts, emails or websites visited. 40 |
41 | Please consult our Privacy Policy for more details. 42 |
43 | 20 | The data collected through the app will be encrypted on the phone. 21 |
22 | We will separate your account information (name, email, contact information, etc.) from 23 | the study data (the responses to surveys, the mole pictures and the mole measurements). 24 | The metadata will consist of your responses to survey and mole measurements only. No 25 | mole pictures will be included in the metadata. 26 |
27 | We will use a random code instead of your name on all study data. This code cannot be 28 | used to directly re-identify you. Information about the code will be kept in a separate 29 | secure system. Only key personnel from the study team may connect your study data to 30 | your name and account information. 31 |
32 | Sancy Leachman, MD. PhD, is leading the study teams for both the Mole Mapper study and 33 | the War on Melanoma™ Community Registry. 34 |
35 | The photos you take using Mole Mapper are stored within the app, not on your phone 36 | photostream or other cloud storage system. 37 |
38 | We will not access your personal phone contacts, other applications, personal photos, 39 | texts, emails or websites visited. 40 |
41 | Please consult our Privacy Policy for more details. 42 |
15 |
16 |
53 |
54 |
55 |
56 |
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/app/src/main/assets/html/study_overview_styles.css:
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1 | @charset "UTF-8";
2 |
3 | a:link, a:active, a:visited, a:active {
4 | font-family: sans-serif-medium;
5 | font-style: normal;
6 | font-size:11pt;
7 | text-decoration: none;
8 | color:#5a95cd;
9 | }
10 |
11 | img {
12 | display: block;
13 | height: auto;
14 | max-width: 100%;
15 | }
16 |
17 | body {
18 | font-family: sans-serif;
19 | font-style: normal;
20 | font-size:11pt;
21 | color:#000000;
22 | padding-top:0px;
23 | padding-bottom:20px;
24 | }
25 |
26 | p, h2 {
27 | margin-top: 0;
28 | padding-right: 0px;
29 | padding-left: 0px;
30 | }
31 |
32 | h1 {
33 | font-family: sans-serif;
34 | font-style: normal;
35 | font-size:15.8pt;
36 | color:#000000;
37 | padding-top:0px;
38 | padding-bottom:0px;
39 | }
40 |
41 | .footer {
42 | background-color: #FFFFFF;
43 | width: 20%;
44 | margin: 0 auto;
45 | }
46 |
47 | .content {
48 | padding: 10px 10px 10px 10px;
49 | }
50 |
51 | .content ul, .content ol {
52 | padding: 0 10px 15px 15px;
53 | }
54 |
55 | IMG.displayed {
56 | display: block;
57 | margin-left: auto;
58 | margin-right: auto
59 | }
60 |
61 | bold {
62 | font-family:sans-serif-medium;
63 | font-size:16pt;
64 | color:#000000;
65 | line-height:normal;
66 | font-weight:normal;
67 | padding-top:0px;
68 | padding-bottom:0px;
69 | }
70 |
71 | ul, ol {
72 | font-family: sans-serif;
73 | font-style: normal;
74 | font-size:11pt;
75 | color:#000000;
76 | list-style-type: disk;
77 | list-style-position: inside;
78 |
79 | }
80 |
81 | .ExternalClass * {
82 | line-height: 100%
83 | }
84 |
85 | @media screen and (-webkit-device-pixel-ratio:0.75) {
86 | img.logo {
87 | background-image: url('res/drawable-ldpi/logo_institution.png');
88 | width: 75px;
89 | height: 75px;
90 | border: 1px solid #ff0000;
91 | }
92 | }
93 |
94 | @media screen and (-webkit-device-pixel-ratio:1.0) {
95 | img.logo {
96 | background-image: url('res/drawable-mdpi/logo_institution.png');
97 | width: 100px;
98 | height: 100px;
99 | border: 1px solid #00ff00;
100 | }
101 | }
102 |
103 | @media screen and (-webkit-device-pixel-ratio:1.5) {
104 | img.logo {
105 | background-image: url('res/drawable-hdpi/logo_institution.png');
106 | width: 150px;
107 | height: 150px;
108 | border: 1px solid #0000ff;
109 | }
110 | }
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/app/src/main/java/org/researchstack/molemapper/bridge/Info.java:
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1 | package org.researchstack.molemapper.bridge;
2 | import android.content.Context;
3 | import android.content.pm.PackageInfo;
4 | import android.content.pm.PackageManager;
5 | import android.os.Build;
6 |
7 | import org.researchstack.backbone.utils.LogExt;
8 | import org.researchstack.molemapper.R;
9 |
10 | import java.util.ArrayList;
11 | import java.util.List;
12 | import java.util.UUID;
13 |
14 | /**
15 | * Created by bradleymcdermott on 2/8/16.
16 | */
17 | public class Info
18 | {
19 | public static final int BRIDGE_PHONE_INFO_LIMIT = 48;
20 |
21 | private List
17 | Researchers from Sage Bionetworks (nonprofit) and OHSU Department of Dermatology invite
18 | you to participate in a research study about melanoma using Mole Mapper and
19 | ResearchStack.
20 |
21 | The aims of this study are to better understand skin biology and melanoma risks and to 22 | contribute information to the Melanoma Community Registry maintained by OHSU. 23 |
24 | By analyzing the data from many Mole Mapper app users we hope to better understand the 25 | variation in mole growth and cancer risks, and whether a mobile device can help people 26 | measure moles accurately and manage their skin health better. 27 |
28 | By answering few questions about yourself, tracking your moles regularly and sharing 29 | your mole measurements, you can help us learn how melanoma develops and what can be done 30 | to reduce risks of melanoma. 31 |
32 | If you are over 18 years old, we invite you to join the study and declare war on 33 | melanoma. 34 |
35 | Questions? 36 |
37 | 38 | Please contact the Mole Mapper study sponsor at +1-206-667-2115 39 | (toll-free 40 | +1-844-693-2137) or by email molemapperstudy@sagebase.org 42 |
43 | 44 | For the Melanoma Community Registry, please contact the OHSU Research Integrity Office 45 | at +1-503-494-7887 or by email at WarOnMelanoma@ohsu.edu 47 |
48 | Mole Mapper is a research study and does not provide medical advice, diagnosis or 49 | treatment 50 |
51 |
52 | 21 | The aims of this study are to better understand skin biology and melanoma risks and to 22 | contribute information to the Melanoma Community Registry maintained by OHSU. 23 |
24 | By analyzing the data from many Mole Mapper app users we hope to better understand the 25 | variation in mole growth and cancer risks, and whether a mobile device can help people 26 | measure moles accurately and manage their skin health better. 27 |
28 | By answering few questions about yourself, tracking your moles regularly and sharing 29 | your mole measurements, you can help us learn how melanoma develops and what can be done 30 | to reduce risks of melanoma. 31 |
32 | If you are over 18 years old, we invite you to join the study and declare war on 33 | melanoma. 34 |
35 | Questions? 36 |
37 | 38 | Please contact the Mole Mapper study sponsor at +1-206-667-2115 39 | (toll-free 40 | +1-844-693-2137) or by email molemapperstudy@sagebase.org 42 |
43 | 44 | For the Melanoma Community Registry, please contact the OHSU Research Integrity Office 45 | at +1-503-494-7887 or by email at WarOnMelanoma@ohsu.edu 47 |
48 | Mole Mapper is a research study and does not provide medical advice, diagnosis or 49 | treatment 50 |
List of validation messages, generally contains error messages. Since a single upload 71 | * file may fail validation in multiple ways, Bridge server will attempt to return all messages 72 | * to the user. For example, the upload file might be unencrypted, uncompressed, and it might 73 | * not fit any of the expected schemas for the study.
This field is always non-null, 74 | * but it may be empty. The list is immutable and contains non-null, non-empty strings.
75 | * 76 | * @return messageList 77 | */ 78 | public List25 | com.android.support:cardview-v7
26 | com.android.support:design 27 | 28 | 29 | - Used for theming and styling views within the app. Libraries also provide backward-compatible versions of Android framework APIs (e.g. vector icon support) 30 | 31 | com.android.support:support-v13:23.2.0 32 | 33 | - Support is a set of code libraries that provide backward-compatible versions of Android framework APIs. We use support for FragmentCompat and its use in receiving the results for permission requests. 34 | 35 | com.android.support:multidex 36 | 37 | - The Android MultiDex support library enables us to go past the default 65K method limit for an android project. 38 | 39 | com.davemorrissey.labs:subsampling-scale-image-view 40 | 41 | - Used within the MoleMeasurementActivity, allows user to zoom and pan an image with subsampling for low impact on memory 42 | 43 | co.touchlab.squeaky:squeaky-processor:0.4.0.0 44 | 45 | - Annotation processor for the Squeaky ORMLite database library. The library creates auto-generated code at compile time for our database pojos (see Mole or Measurement classes) 46 | 47 | 48 | pl.charmas.android:android-reactive-location
49 | com.google.android.gms:play-services-location
50 | 51 | - play-services-location allows the app to get the user's location while being conscious of battery life. Android-reactive-location library wraps the location services API’s in Rx Observables. 52 | 53 | com.crashlytics.sdk.android:crashlytics 54 | 55 | - Crash / Logging library being used during the QA period. This library will be removed at v1.0 release. 56 | -------------------------------------------------------------------------------- /app/src/main/java/org/researchstack/molemapper/ui/view/PhotoGridView.java: -------------------------------------------------------------------------------- 1 | package org.researchstack.molemapper.ui.view; 2 | import android.annotation.TargetApi; 3 | import android.content.Context; 4 | import android.graphics.Canvas; 5 | import android.graphics.Color; 6 | import android.graphics.Paint; 7 | import android.graphics.PorterDuff; 8 | import android.graphics.PorterDuffXfermode; 9 | import android.util.AttributeSet; 10 | import android.view.View; 11 | 12 | public class PhotoGridView extends View 13 | { 14 | private Paint paint; 15 | private Paint cutoutPaint; 16 | 17 | 18 | public PhotoGridView(Context context) 19 | { 20 | super(context); 21 | init(); 22 | } 23 | 24 | public PhotoGridView(Context context, AttributeSet attrs) 25 | { 26 | super(context, attrs); 27 | init(); 28 | } 29 | 30 | public PhotoGridView(Context context, AttributeSet attrs, int defStyleAttr) 31 | { 32 | super(context, attrs, defStyleAttr); 33 | init(); 34 | } 35 | 36 | @TargetApi(21) 37 | public PhotoGridView(Context context, AttributeSet attrs, int defStyleAttr, int defStyleRes) 38 | { 39 | super(context, attrs, defStyleAttr, defStyleRes); 40 | init(); 41 | } 42 | 43 | int lineSize; 44 | 45 | private void init() 46 | { 47 | setLayerType(LAYER_TYPE_SOFTWARE, null); 48 | 49 | lineSize = (int) (getResources().getDisplayMetrics().density * 2 + .5f); 50 | 51 | paint = new Paint(); 52 | paint.setAntiAlias(true); 53 | paint.setColor(Color.WHITE); 54 | paint.setStrokeWidth(lineSize); 55 | paint.setAlpha(102); 56 | 57 | cutoutPaint = new Paint(); 58 | cutoutPaint.setAntiAlias(true); 59 | cutoutPaint.setColor(Color.TRANSPARENT); 60 | cutoutPaint.setXfermode(new PorterDuffXfermode(PorterDuff.Mode.CLEAR)); 61 | } 62 | 63 | @Override 64 | protected void onDraw(Canvas canvas) 65 | { 66 | super.onDraw(canvas); 67 | 68 | // Draw transparent black 69 | canvas.drawColor(0x66000000); 70 | 71 | // Draw cut-out 72 | canvas.drawRect(getPaddingLeft(), 73 | getPaddingTop(), 74 | getWidth() - getPaddingRight(), 75 | getHeight() - getPaddingBottom(), 76 | cutoutPaint); 77 | 78 | // Set guide style 79 | paint.setStyle(Paint.Style.FILL); 80 | paint.setColor(0x66FFFFFF); 81 | 82 | // Draw vertical guides 83 | canvas.drawRect(getPaddingLeft(), 0, getPaddingLeft() + lineSize, getHeight(), paint); 84 | canvas.drawRect(getWidth() - getPaddingRight() - lineSize, 85 | 0, 86 | getWidth() - getPaddingRight(), 87 | getHeight(), 88 | paint); 89 | 90 | // Draw horizontal guides 91 | canvas.drawRect(0, getPaddingTop(), getWidth(), getPaddingTop() + lineSize, paint); 92 | canvas.drawRect(0, 93 | getHeight() - getPaddingBottom() - lineSize, 94 | getWidth(), 95 | getHeight() - getPaddingBottom(), 96 | paint); 97 | 98 | // Set guide box style 99 | paint.setColor(Color.WHITE); 100 | paint.setStyle(Paint.Style.STROKE); 101 | 102 | // Draw guide box 103 | float strokeOffset = (int) (paint.getStrokeWidth() / 2f + .5f); 104 | canvas.drawRect(getPaddingLeft() + strokeOffset, 105 | getPaddingTop() + strokeOffset, 106 | getWidth() - getPaddingRight() - strokeOffset, 107 | getHeight() - getPaddingBottom() - strokeOffset, 108 | paint); 109 | 110 | } 111 | } 112 | -------------------------------------------------------------------------------- /app/src/main/java/org/researchstack/molemapper/task/FollowupTask.java: -------------------------------------------------------------------------------- 1 | package org.researchstack.molemapper.task; 2 | import android.content.Context; 3 | 4 | import org.researchstack.backbone.answerformat.AnswerFormat; 5 | import org.researchstack.backbone.answerformat.BooleanAnswerFormat; 6 | import org.researchstack.backbone.step.FormStep; 7 | import org.researchstack.backbone.step.InstructionStep; 8 | import org.researchstack.backbone.step.QuestionStep; 9 | import org.researchstack.backbone.step.Step; 10 | import org.researchstack.backbone.task.OrderedTask; 11 | import org.researchstack.backbone.task.Task; 12 | import org.researchstack.molemapper.R; 13 | 14 | import java.util.ArrayList; 15 | import java.util.List; 16 | 17 | public class FollowupTask 18 | { 19 | public static final String TASK_FOLLOW_UP = "followup"; 20 | 21 | public static final String TAN = "tan"; 22 | public static final String SUNBURN = "sunburn"; 23 | public static final String SUNSCREEN = "sunscreen"; 24 | public static final String SICK = "sick"; 25 | public static final String MOLE_REMOVED = "moleRemoved"; 26 | public static final String FOLLOWUP_FORM = "followupInfo"; 27 | 28 | private FollowupTask() 29 | { 30 | } 31 | 32 | public static Task create(Context context) 33 | { 34 | List
15 |
16 |
64 |
65 |
66 |
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/app/src/main/res/layout/item_chart_general.xml:
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1 |
2 |
17 | This study gives you the option to share your data in 2 ways:
18 |
63 | -
19 |
- Share with the research world (“Share broadly”): You can choose to share your 20 | study data with the study team and its partners and your coded study data with 21 | qualified researchers worldwide for use in this research and beyond. Coded study 22 | data is data that does not include personal information such as your name or 23 | email. Qualified researchers are registered users of Synapse who have agreed to 24 | use the data in an ethical manner for research purposes, and have agreed to not 25 | attempt to re-identify you. If you choose to share your coded study data, the 26 | metadata (your response to survey questions and the mole measurements without 27 | the mole photo) will be added to a shared dataset available to qualified 28 | researchers on the Sage Bionetworks Synapse servers at synapse.org. Your mole 29 | photos will be available to qualified researchers who have received ethical 30 | approval to use the photos for their research. Sage Bionetworks will have no 31 | oversight on the future research that qualified researchers may conduct with the 32 | coded study data. 33 | 34 | 35 |
- Only share with the study team (“Share sparsely”): You can choose to share your
36 | study data only with the study team and its partners. The study team includes
37 | the Principal Investigator of the research and any other researchers or partners
38 | named in the consent document. Sharing your study data this way means that your
39 | data will not be made available to anyone other than those listed in the consent
40 | document for the purposes of this study, and to be part of and to be part of the
41 | OHSU War on Melanoma™ Community Registry. If required by law, your study data,
42 | account information and the signed consent form may be disclosed to:
43 |
-
44 |
- The US Department of Health and Human Services, the Office for Human 45 | Research Protection, and other agencies for verification of the research 46 | procedures and data. 47 | 48 |
- Institutional Review Board who monitors the safety, effectiveness and 49 | conduct of the research being conducted 50 | 51 | 52 |
- The results of this research study may be presented at meetings or in 53 | publications. If the results of this study are made public, only coded 54 | study data and de-identified mole photos will be used, that is, your 55 | personal information will not be disclosed. 56 | 57 |
59 |