├── Appendicies ├── atomicCAS │ ├── Makefile │ ├── atomicCAS.cu │ ├── atomicCAS_vs2019.vcxproj │ └── atomicCAS_vs2022.vcxproj ├── avxsaxpy │ ├── Makefile │ ├── avxsaxpy.cpp │ ├── avxsaxpy_vs2019.vcxproj │ └── avxsaxpy_vs2022.vcxproj ├── cpusaxpy │ ├── Makefile │ ├── cpusaxpy.cpp │ ├── cpusaxpy_vs2019.vcxproj │ └── cpusaxpy_vs2022.vcxproj ├── cxbinio │ ├── Makefile │ ├── cxbinio.cpp │ ├── cxbinio_vs2019.vcxproj │ └── cxbinio_vs2022.vcxproj ├── gpusaxpy │ ├── Makefile │ ├── gpusaxpy.cu │ ├── gpusaxpy_vs2019.vcxproj │ └── gpusaxpy_vs2022.vcxproj ├── iter │ ├── Makefile │ ├── iter.cpp │ ├── iter_vs2019.vcxproj │ └── iter_vs2022.vcxproj ├── ompsaxpy │ ├── Makefile │ ├── ompsaxpy.cpp │ ├── ompsaxpy_vs2019.vcxproj │ └── ompsaxpy_vs2022.vcxproj └── saxpy_vs │ ├── Makefile │ ├── saxpy_vs.cpp │ ├── saxpy_vs_vs2019.vcxproj │ └── saxpy_vs_vs2022.vcxproj ├── Chapter01 ├── cpusum │ ├── Makefile │ ├── cpusum.cpp │ ├── cpusum_vs2019.vcxproj │ └── cpusum_vs2022.vcxproj ├── gpusum │ ├── Makefile │ ├── gpusum.cu │ ├── gpusum_vs2019.vcxproj │ └── gpusum_vs2022.vcxproj └── ompsum │ ├── Makefile │ ├── ompsum.cpp │ ├── ompsum_vs2019.vcxproj │ └── ompsum_vs2022.vcxproj ├── Chapter02 ├── blasmult │ ├── Makefile │ ├── blasmult.cu │ ├── blasmult_vs2019.vcxproj │ └── blasmult_vs2022.vcxproj ├── gpumult0 │ ├── Makefile │ ├── gpumult0.cu │ ├── gpumult0_vs2019.vcxproj │ └── gpumult0_vs2022.vcxproj ├── gpumult1 │ ├── Makefile │ ├── gpumult1.cu │ ├── gpumult1_vs2019.vcxproj │ └── gpumult1_vs2022.vcxproj ├── gpumult2 │ ├── Makefile │ ├── gpumult2.cu │ ├── gpumult2_vs2019.vcxproj │ └── gpumult2_vs2022.vcxproj ├── gpusum_tla │ ├── Makefile │ ├── gpusum_tla.cu │ ├── gpusum_tla_vs2019.vcxproj │ └── gpusum_tla_vs2022.vcxproj ├── gputiled │ ├── Makefile │ ├── gputiled.cu │ ├── gputiled_vs2019.vcxproj │ └── gputiled_vs2022.vcxproj ├── gputiled1 │ ├── Makefile │ ├── gputiled1.cu │ ├── gputiled1_vs2019.vcxproj │ └── gputiled1_vs2022.vcxproj ├── grid3D │ ├── Makefile │ ├── grid3D.cu │ ├── grid3D_vs2019.vcxproj │ └── grid3D_vs2022.vcxproj ├── grid3D_linear │ ├── Makefile │ ├── grid3D_linear.cu │ ├── grid3D_linear_vs2019.vcxproj │ └── grid3D_linear_vs2022.vcxproj ├── hostmult0 │ ├── Makefile │ ├── hostmult0.cpp │ ├── hostmult0_vs2019.vcxproj │ └── hostmult0_vs2022.vcxproj ├── hostmult1 │ ├── Makefile │ ├── hostmult1.cpp │ ├── hostmult1_vs2019.vcxproj │ └── hostmult1_vs2022.vcxproj ├── reduce0 │ ├── Makefile │ ├── reduce0.cu │ ├── reduce0_vs2019.vcxproj │ └── reduce0_vs2022.vcxproj ├── reduce1 │ ├── Makefile │ ├── reduce1.cu │ ├── reduce1_vs2019.vcxproj │ └── reduce1_vs2022.vcxproj ├── reduce2 │ ├── Makefile │ ├── reduce2.cu │ ├── reduce2_vs2019.vcxproj │ └── reduce2_vs2022.vcxproj ├── reduce3 │ ├── Makefile │ ├── reduce3.cu │ ├── reduce3_vs2019.vcxproj │ └── reduce3_vs2022.vcxproj ├── reduce4 │ ├── Makefile │ ├── reduce4.cu │ ├── reduce4_vs2019.vcxproj │ └── reduce4_vs2022.vcxproj ├── reduce_shared │ ├── Makefile │ ├── reduce_shared.cu │ ├── reduce_shared_vs2019.vcxproj │ └── reduce_shared_vs2022.vcxproj └── shared_example │ ├── Makefile │ ├── shared_example.cu │ ├── shared_example_vs2019.vcxproj │ └── shared_example_vs2022.vcxproj ├── Chapter03 ├── cgwarp │ ├── Makefile │ ├── cgwarp.cu │ ├── cgwarp_vs2019.vcxproj │ └── cgwarp_vs2022.vcxproj ├── coop3D │ ├── Makefile │ ├── coop3D.cu │ ├── coop3D_vs2019.vcxproj │ └── coop3D_vs2022.vcxproj ├── deadlock │ ├── Makefile │ ├── deadlock.cu │ ├── deadlock_vs2019.vcxproj │ └── deadlock_vs2022.vcxproj ├── deadlock_coal │ ├── Makefile │ ├── deadlock_coal.cu │ ├── deadlock_coal_vs2019.vcxproj │ └── deadlock_coal_vs2022.vcxproj ├── reduce5 │ ├── Makefile │ ├── reduce5.cu │ ├── reduce5_vs2019.vcxproj │ └── reduce5_vs2022.vcxproj ├── reduce6 │ ├── Makefile │ ├── reduce6.cu │ ├── reduce6_vs2019.vcxproj │ └── reduce6_vs2022.vcxproj ├── reduce7 │ ├── Makefile │ ├── reduce7.cu │ ├── reduce7_vs2019.vcxproj │ └── reduce7_vs2022.vcxproj ├── reduce7_vl │ ├── Makefile │ ├── reduce7_vl.cu │ ├── reduce7_vl_vs2019.vcxproj │ └── reduce7_vl_vs2022.vcxproj ├── reduce7_vl_coal │ ├── Makefile │ ├── reduce7_vl_coal.cu │ ├── reduce7_vl_coal_vs2019.vcxproj │ └── reduce7_vl_coal_vs2022.vcxproj ├── reduce7_vl_coal_any │ ├── Makefile │ ├── reduce7_vl_coal_any.cu │ ├── reduce7_vl_coal_any_vs2019.vcxproj │ └── reduce7_vl_coal_any_vs2022.vcxproj ├── reduce8 │ ├── Makefile │ ├── reduce8.cu │ ├── reduce8_vs2019.vcxproj │ └── reduce8_vs2022.vcxproj └── reduce8_vl │ ├── Makefile │ ├── reduce8_vl.cu │ ├── reduce8_vl_vs2019.vcxproj │ └── reduce8_vl_vs2022.vcxproj ├── Chapter04 ├── batcher9PT │ ├── Makefile │ ├── batcher9PT.cu │ ├── batcher9PT_vs2019.vcxproj │ └── batcher9PT_vs2022.vcxproj ├── cascade │ ├── Makefile │ ├── cascade.cu │ ├── cascade_vs2019.vcxproj │ └── cascade_vs2022.vcxproj ├── filter9PT │ ├── Makefile │ ├── filter9PT.cu │ ├── filter9PT_vs2019.vcxproj │ └── filter9PT_vs2022.vcxproj ├── filter9PT_2 │ ├── Makefile │ ├── filter9PT_2.cu │ ├── filter9PT_2_vs2019.vcxproj │ └── filter9PT_2_vs2022.vcxproj ├── filter9PT_3 │ ├── Makefile │ ├── filter9PT_3.cu │ ├── filter9PT_3_vs2019.vcxproj │ └── filter9PT_3_vs2022.vcxproj ├── median9PT │ ├── Makefile │ ├── median9PT.cu │ ├── median9PT_vs2019.vcxproj │ └── median9PT_vs2022.vcxproj ├── reduce_maxdiff │ ├── Makefile │ ├── reduce_maxdiff.cu │ ├── reduce_maxdiff_vs2019.vcxproj │ └── reduce_maxdiff_vs2022.vcxproj ├── sobel6PT │ ├── Makefile │ ├── sobel6PT.cu │ ├── sobel6PT_vs2019.vcxproj │ └── sobel6PT_vs2022.vcxproj ├── stencil2D │ ├── Makefile │ ├── stencil2D.cu │ ├── stencil2D_vs2019.vcxproj │ └── stencil2D_vs2022.vcxproj ├── stencil2D_sm │ ├── Makefile │ ├── stencil2D_sm.cu │ ├── stencil2D_sm_vs2019.vcxproj │ └── stencil2D_sm_vs2022.vcxproj ├── stencil3D │ ├── Makefile │ ├── stencil3D.cu │ ├── stencil3D_vs2019.vcxproj │ └── stencil3D_vs2022.vcxproj ├── stencil9PT │ ├── Makefile │ ├── stencil9PT.cu │ ├── stencil9PT_vs2019.vcxproj │ └── stencil9PT_vs2022.vcxproj └── stencil9PT_sm │ ├── Makefile │ ├── stencil9PT_sm.cu │ ├── stencil9PT_sm_vs2019.vcxproj │ └── stencil9PT_sm_vs2022.vcxproj ├── Chapter05 ├── affine3D │ ├── Makefile │ ├── affine3D.cu │ ├── affine3D_vs2019.vcxproj │ └── affine3D_vs2022.vcxproj ├── register │ ├── Makefile │ ├── register.cu │ ├── register_vs2019.vcxproj │ └── register_vs2022.vcxproj ├── rotate1 │ ├── Makefile │ ├── rotate1.cu │ ├── rotate1_vs2019.vcxproj │ └── rotate1_vs2022.vcxproj ├── rotate1B │ ├── Makefile │ ├── rotate1B.cu │ ├── rotate1B_vs2019.vcxproj │ └── rotate1B_vs2022.vcxproj ├── rotate2 │ ├── Makefile │ ├── rotate2.cu │ ├── rotate2_vs2019.vcxproj │ └── rotate2_vs2022.vcxproj ├── rotate3 │ ├── Makefile │ ├── rotate3.cu │ ├── rotate3_vs2019.vcxproj │ └── rotate3_vs2022.vcxproj ├── rotate4 │ ├── Makefile │ ├── rotate4.cu │ ├── rotate4_vs2019.vcxproj │ └── rotate4_vs2022.vcxproj └── rotate4cv │ ├── Makefile │ ├── rotate4cv.cu │ ├── rotate4cv_vs2019.vcxproj │ └── rotate4cv_vs2022.vcxproj ├── Chapter06 ├── ising │ ├── Makefile │ ├── ising.cu │ ├── ising_vs2019.vcxproj │ └── ising_vs2022.vcxproj ├── piG │ ├── Makefile │ ├── piG.cu │ ├── piG_vs2019.vcxproj │ └── piG_vs2022.vcxproj ├── piH │ ├── Makefile │ ├── piH.cpp │ ├── piH_vs2019.vcxproj │ └── piH_vs2022.vcxproj ├── piH2 │ ├── Makefile │ ├── piH2.cpp │ ├── piH2_vs2019.vcxproj │ └── piH2_vs2022.vcxproj ├── piH4 │ ├── Makefile │ ├── README.txt │ ├── piH4.cpp │ ├── piH4.cu │ ├── piH4_vs2019.vcxproj │ └── piH4_vs2022.vcxproj ├── piH5 │ ├── Makefile │ ├── README.txt │ ├── piH5.cpp │ ├── piH5.cu │ ├── piH5_vs2019.vcxproj │ └── piH5_vs2022.vcxproj ├── piH6 │ ├── Makefile │ ├── piH6.cu │ ├── piH6_vs2019.vcxproj │ └── piH6_vs2022.vcxproj └── piOMP │ ├── Makefile │ ├── piOMP.cpp │ ├── piOMP_vs2019.vcxproj │ └── piOMP_vs2022.vcxproj ├── Chapter07 ├── asyncDiskIO │ ├── Makefile │ ├── asyncDiskIO.cu │ ├── asyncDiskIO_vs2019.vcxproj │ └── asyncDiskIO_vs2022.vcxproj ├── asyncDiskIO_Ex │ ├── Makefile │ ├── asyncDiskIO_Ex.cu │ ├── asyncDiskIO_Ex_vs2019.vcxproj │ ├── asyncDiskIO_Ex_vs2022.vcxproj │ └── data │ │ ├── run12.bat │ │ └── run12_new.bat ├── event1 │ ├── Makefile │ ├── event1.cu │ ├── event1_vs2019.vcxproj │ └── event1_vs2022.vcxproj ├── event2 │ ├── Makefile │ ├── event2.cu │ ├── event2_vs2019.vcxproj │ └── event2_vs2022.vcxproj ├── graph │ ├── Makefile │ ├── graph.cu │ ├── graph_vs2019.vcxproj │ └── graph_vs2022.vcxproj └── pipeline │ ├── Makefile │ ├── pipeline.cu │ ├── pipeline_vs2019.vcxproj │ └── pipeline_vs2022.vcxproj ├── Chapter08 ├── RLdeconv │ ├── Makefile │ ├── RLdeconv.cu │ ├── RLdeconv_vs2019.vcxproj │ ├── RLdeconv_vs2022.vcxproj │ └── data │ │ ├── RL_GPU8_15_1000_100000.raw │ │ ├── RL_Host8_15_1000_20.raw │ │ ├── blurred_image8.raw │ │ └── joriginal.png ├── data │ ├── Build_System_Matrix_from_Spot_Files.txt │ ├── Derenzo_Phantom_Generation.txt │ ├── Fullsim_Generate_SpotMaps.txt │ ├── Run_Reco_using_System_Matrix.txt │ └── dergen5.bat ├── derenzo │ ├── Makefile │ ├── data │ │ ├── derenzo.bat │ │ ├── derenzo.sh │ │ ├── derenzo.xlsx │ │ ├── dergen_vol.bat │ │ └── dergen_vol_orig.bat │ ├── derenzo.cpp │ ├── derenzo_vs2019.vcxproj │ └── derenzo_vs2022.vcxproj ├── fullblk │ ├── Makefile │ ├── fullblk.cu │ ├── fullblk_vs2019.vcxproj │ └── fullblk_vs2022.vcxproj ├── fulldoi │ ├── Makefile │ ├── fulldoi.cu │ ├── fulldoi_vs2019.vcxproj │ └── fulldoi_vs2022.vcxproj ├── fullsim │ ├── Makefile │ ├── fullsim.cu │ ├── fullsim_vs2019.vcxproj │ └── fullsim_vs2022.vcxproj ├── polmake │ ├── Makefile │ ├── polmake.cu │ ├── polmake_vs2019.vcxproj │ └── polmake_vs2022.vcxproj ├── poluse │ ├── Makefile │ ├── poluse.cpp │ ├── poluse_vs2019.vcxproj │ └── poluse_vs2022.vcxproj ├── readspot │ ├── Makefile │ ├── readspot.cpp │ ├── readspot_vs2019.vcxproj │ └── readspot_vs2022.vcxproj ├── reco │ ├── Makefile │ ├── reco.cu │ ├── reco_vs2019.vcxproj │ └── reco_vs2022.vcxproj ├── recosem │ ├── Makefile │ ├── recosem.cu │ ├── recosem_vs2019.vcxproj │ └── recosem_vs2022.vcxproj ├── smsplit │ ├── Makefile │ ├── smsplit.cpp │ ├── smsplit_vs2019.vcxproj │ └── smsplit_vs2022.vcxproj └── vol2gold │ ├── Makefile │ ├── vol2gold.cpp │ ├── vol2gold_vs2019.vcxproj │ └── vol2gold_vs2022.vcxproj ├── Chapter09 ├── memtests │ ├── Makefile │ ├── memtests.cu │ ├── memtests_vs2019.vcxproj │ └── memtests_vs2022.vcxproj ├── memtests2 │ ├── Makefile │ ├── memtests2.cu │ ├── memtests2_vs2019.vcxproj │ └── memtests2_vs2022.vcxproj ├── mpi_alltoall │ ├── Makefile │ ├── mpi_alltoall.cpp │ ├── mpi_alltoall_vs2019.vcxproj │ └── mpi_alltoall_vs2022.vcxproj ├── mpi_reduce │ ├── Makefile │ ├── mpi_reduce.cpp │ ├── mpi_reduce_vs2019.vcxproj │ └── mpi_reduce_vs2022.vcxproj ├── multiGPU │ ├── Makefile │ ├── multiGPU.cu │ ├── multiGPU_vs2019.vcxproj │ └── multiGPU_vs2022.vcxproj └── p2ptest │ ├── Makefile │ ├── p2ptest.cu │ ├── p2ptest_vs2019.vcxproj │ └── p2ptest_vs2022.vcxproj ├── Chapter10 ├── gpulog │ ├── Makefile │ ├── gpulog.cu │ ├── gpulog_vs2019.vcxproj │ └── gpulog_vs2022.vcxproj └── gpulog_nvtx │ ├── Makefile │ ├── gpulog_nvtx.cu │ ├── gpulog_nvtx_vs2019.vcxproj │ └── gpulog_nvtx_vs2022.vcxproj ├── Chapter11 ├── matmulT │ ├── Makefile │ ├── matmulT.cu │ ├── matmulT_vs2019.vcxproj │ └── matmulT_vs2022.vcxproj ├── matmulTS │ ├── Makefile │ ├── matmulTS.cu │ ├── matmulTS_vs2019.vcxproj │ └── matmulTS_vs2022.vcxproj └── reduceT │ ├── Makefile │ ├── reduceT.cu │ ├── reduceT_vs2019.vcxproj │ └── reduceT_vs2022.vcxproj ├── LICENSE ├── README.md ├── README.txt ├── bin ├── RLdeconv.exe ├── affine3D.exe ├── asyncDiskIO.exe ├── asyncDiskIO_Ex.exe ├── atomicCAS.exe ├── avxsaxpy.exe ├── batcher9PT.exe ├── blasmult.exe ├── cascade.exe ├── cgwarp.exe ├── coop3D.exe ├── cpusaxpy.exe ├── cpusum.exe ├── cxbinio.exe ├── deadlock.exe ├── deadlock_coal.exe ├── derenzo.exe ├── event1.exe ├── event2.exe ├── filter9PT.exe ├── filter9PT_2.exe ├── filter9PT_3.exe ├── fullblk.exe ├── fulldoi.exe ├── fullsim.exe ├── gpulog.exe ├── gpulog_nvtx.exe ├── gpumult0.exe ├── gpumult1.exe ├── gpumult2.exe ├── gpusaxpy.exe ├── gpusum.exe ├── gpusum_tla.exe ├── gputiled.exe ├── gputiled1.exe ├── graph.exe ├── grid3D.exe ├── grid3D_linear.exe ├── hostmult0.exe ├── hostmult1.exe ├── ising.exe ├── iter.exe ├── matmulT.exe ├── matmulTS.exe ├── median9PT.exe ├── memtests.exe ├── memtests2.exe ├── mpi_alltoall.exe ├── mpi_reduce.exe ├── multiGPU.exe ├── ompsaxpy.exe ├── ompsum.exe ├── p2ptest.exe ├── piG.exe ├── piG2.exe ├── piH.exe ├── piH2.exe ├── piH4.exe ├── piH5.exe ├── piH6.exe ├── piOMP.exe ├── pipeline.exe ├── polmake.exe ├── poluse.exe ├── readspot.exe ├── reco.exe ├── recosem.exe ├── reduce0.exe ├── reduce1.exe ├── reduce2.exe ├── reduce3.exe ├── reduce4.exe ├── reduce5.exe ├── reduce6.exe ├── reduce7.exe ├── reduce7_vl.exe ├── reduce7_vl_coal.exe ├── reduce7_vl_coal_any.exe ├── reduce8.exe ├── reduce8_vl.exe ├── reduceT.exe ├── reduce_maxdiff.exe ├── reduce_shared.exe ├── register.exe ├── rotate1.exe ├── rotate1B.exe ├── rotate2.exe ├── rotate3.exe ├── rotate4.exe ├── rotate4cv.exe ├── saxpy_vs.exe ├── shared_example.exe ├── smsplit.exe ├── sobel6PT.exe ├── stencil2D.exe ├── stencil2D_sm.exe ├── 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