├── .gitattributes ├── .github ├── CONTRIBUTING.md ├── Pathology_DINO.jpg ├── attention_visualization.png ├── table1.jpg ├── table2.jpg └── umap.jpg ├── LICENSE ├── README.md ├── UMAPs ├── crc100k_train_resnet50_tcga_brca_simclr_umap_n15_d0.10.jpg ├── crc100k_train_resnet50_trunc_umap_n15_d0.10.jpg ├── crc100k_train_vits_tcga_brca_dino_umap_n15_d0.10.jpg ├── crc100knonorm_train_resnet50_tcga_brca_simclr_umap_n15_d0.10.jpg ├── crc100knonorm_train_resnet50_trunc_umap_n15_d0.10.jpg └── crc100knonorm_train_vits_tcga_brca_dino_umap_n15_d0.10.jpg ├── attention_visualization_256.ipynb ├── attention_visualization_results └── image_256 │ ├── image_256.png_mask_th.png │ └── image_256.png_mask_th0.5_head0.png ├── attention_visualization_utils.py ├── ckpts ├── resnet50_tcga_brca_simclr.pt └── vits_tcga_brca_dino.pt ├── embeddings_patch_library ├── bcss_train_resnet50_tcga_brca_simclr.pkl ├── bcss_train_resnet50_trunc.pkl ├── bcss_train_vits_tcga_brca_dino.pkl ├── bcss_val_resnet50_tcga_brca_simclr.pkl ├── bcss_val_resnet50_trunc.pkl ├── bcss_val_vits_tcga_brca_dino.pkl ├── breastq_train_resnet50_tcga_brca_simclr.pkl ├── breastq_train_resnet50_trunc.pkl ├── breastq_train_vits_tcga_brca_dino.pkl ├── breastq_val_resnet50_tcga_brca_simclr.pkl ├── breastq_val_resnet50_trunc.pkl ├── breastq_val_vits_tcga_brca_dino.pkl ├── crc100k_train_resnet50_tcga_brca_simclr.pkl ├── crc100k_train_resnet50_trunc.pkl ├── crc100k_train_vits_tcga_brca_dino.pkl ├── crc100k_val_resnet50_tcga_brca_simclr.pkl ├── crc100k_val_resnet50_trunc.pkl ├── crc100k_val_vits_tcga_brca_dino.pkl ├── crc100knonorm_train_resnet50_tcga_brca_simclr.pkl ├── crc100knonorm_train_resnet50_trunc.pkl ├── crc100knonorm_train_vits_tcga_brca_dino.pkl ├── crc100knonorm_val_resnet50_tcga_brca_simclr.pkl ├── crc100knonorm_val_resnet50_trunc.pkl └── crc100knonorm_val_vits_tcga_brca_dino.pkl ├── image_demo ├── image_256.png └── image_4k.png ├── nn_encoder_arch ├── __pycache__ │ ├── resnet_trunc.cpython-37.pyc │ └── vision_transformer.cpython-37.pyc ├── resnet_trunc.py └── vision_transformer.py ├── patch_evaluation.ipynb ├── patch_evaluation_utils.py ├── patch_extraction.ipynb ├── patch_extraction.py ├── patch_extraction_utils.py └── slide_evaluation ├── results ├── tcga_brca_subtype_clam_sb_resnet50_tcga_brca_simclr_0.25_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1637648279.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1637648610.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1637648966.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1637649306.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1637649637.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1637650002.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1637650321.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1637650643.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1637651024.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1637651448.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_2048_resnet50_tcga_brca_simclr_0.25.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_tcga_brca_simclr_0.50_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638503431.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638503839.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638504288.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638504714.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638505138.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638505625.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638506076.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638506509.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638506964.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638507418.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_2048_resnet50_tcga_brca_simclr_0.50.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_tcga_brca_simclr_0.75_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638507833.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638508403.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638508979.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638509531.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638510079.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638510673.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638511271.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638511852.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638512451.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638513042.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_2048_resnet50_tcga_brca_simclr_0.75.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_tcga_brca_simclr_1.00_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638490034.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638490738.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638491430.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638492115.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638492798.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638493526.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638494245.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638494943.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638495653.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638496351.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_2048_resnet50_tcga_brca_simclr_1.00.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_trunc_0.25_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1636222943.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1636223197.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1636223392.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1636223565.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1636223727.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1636223905.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1636224059.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1636224208.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1636224369.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1636224529.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_resnet50_trunc_0.25.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_trunc_0.50_none_s1 │ ├── 0 │ │ ├── events.out.tfevents.1638503406.mahmoodlab-System-Product-Name │ │ └── events.out.tfevents.1638510672.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638511017.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638511303.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638511558.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638511805.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638512085.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638512347.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638512596.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638512853.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638513109.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_resnet50_trunc_0.50.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_trunc_0.75_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638513353.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638513700.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638514038.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638514366.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638514688.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638515038.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638515378.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638515706.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638516042.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638516377.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_resnet50_trunc_0.75.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_resnet50_trunc_1.00_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1636224688.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1636225136.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1636225580.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1636226016.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1636226447.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1636226894.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1636227339.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1636227778.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1636228220.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1636228655.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_resnet50_trunc_1.00.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.25_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1637590610.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1637591110.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1637591645.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1637592179.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1637592701.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1637593179.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1637593700.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1637594133.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1637594605.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1637595157.mahmoodlab-System-Product-Name │ ├── .~lock.summary.csv# │ ├── experiment_tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.25.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.50_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638503602.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638503928.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638504151.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638504335.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638504509.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638504684.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638504849.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638505008.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638505169.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638505334.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.50.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv ├── tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.75_none_s1 │ ├── 0 │ │ └── events.out.tfevents.1638505488.mahmoodlab-System-Product-Name │ ├── 1 │ │ └── events.out.tfevents.1638505709.mahmoodlab-System-Product-Name │ ├── 2 │ │ └── events.out.tfevents.1638505928.mahmoodlab-System-Product-Name │ ├── 3 │ │ └── events.out.tfevents.1638506143.mahmoodlab-System-Product-Name │ ├── 4 │ │ └── events.out.tfevents.1638506353.mahmoodlab-System-Product-Name │ ├── 5 │ │ └── events.out.tfevents.1638506584.mahmoodlab-System-Product-Name │ ├── 6 │ │ └── events.out.tfevents.1638506805.mahmoodlab-System-Product-Name │ ├── 7 │ │ └── events.out.tfevents.1638507026.mahmoodlab-System-Product-Name │ ├── 8 │ │ └── events.out.tfevents.1638507254.mahmoodlab-System-Product-Name │ ├── 9 │ │ └── events.out.tfevents.1638507473.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_0.75.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv └── tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_1.00_none_s1 │ ├── 0 │ ├── events.out.tfevents.1637430686.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637507557.mahmoodlab-System-Product-Name │ ├── 1 │ ├── events.out.tfevents.1637441469.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637515299.mahmoodlab-System-Product-Name │ ├── 2 │ ├── events.out.tfevents.1637452394.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637523625.mahmoodlab-System-Product-Name │ ├── 3 │ ├── events.out.tfevents.1637459499.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637532202.mahmoodlab-System-Product-Name │ ├── 4 │ ├── events.out.tfevents.1637466455.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637540830.mahmoodlab-System-Product-Name │ ├── 5 │ ├── events.out.tfevents.1637473557.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637549406.mahmoodlab-System-Product-Name │ ├── 6 │ ├── events.out.tfevents.1637480603.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637557874.mahmoodlab-System-Product-Name │ ├── 7 │ ├── events.out.tfevents.1637487472.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637566139.mahmoodlab-System-Product-Name │ ├── 8 │ ├── events.out.tfevents.1637494925.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637574263.mahmoodlab-System-Product-Name │ ├── 9 │ ├── events.out.tfevents.1637501596.mahmoodlab-System-Product-Name │ └── events.out.tfevents.1637582488.mahmoodlab-System-Product-Name │ ├── experiment_tcga_brca_subtype_clam_sb_vits_tcga_brca_dino_1.00.txt │ ├── s_0_checkpoint.pt │ ├── s_1_checkpoint.pt │ ├── s_2_checkpoint.pt │ ├── s_3_checkpoint.pt │ ├── s_4_checkpoint.pt │ ├── s_5_checkpoint.pt │ ├── s_6_checkpoint.pt │ ├── s_7_checkpoint.pt │ ├── s_8_checkpoint.pt │ ├── s_9_checkpoint.pt │ ├── split_0_results.pkl │ ├── split_1_results.pkl │ ├── split_2_results.pkl │ ├── split_3_results.pkl │ ├── split_4_results.pkl │ ├── split_5_results.pkl │ ├── split_6_results.pkl │ ├── split_7_results.pkl │ ├── split_8_results.pkl │ ├── split_9_results.pkl │ ├── splits_0.csv │ ├── splits_1.csv │ ├── splits_2.csv │ ├── splits_3.csv │ ├── splits_4.csv │ ├── splits_5.csv │ ├── splits_6.csv │ ├── splits_7.csv │ ├── splits_8.csv │ ├── splits_9.csv │ └── summary.csv └── splits └── 10foldcv_subtype └── tcga_brca ├── splits_0.csv ├── splits_0_bool.csv ├── splits_0_descriptor.csv ├── splits_1.csv ├── splits_1_bool.csv ├── splits_1_descriptor.csv ├── splits_2.csv ├── splits_2_bool.csv ├── 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