├── .gitignore ├── .pypirc ├── .travis.yml ├── Dockerfile ├── LICENSE.txt ├── README.md ├── motif_scraper ├── __init__.py ├── __main__.py └── tests │ ├── test.fa │ ├── test.fa.fai │ ├── test_SequenceMotif.py │ ├── test_fasta_motif_scan.py │ ├── test_make_degenerate_regex.py │ └── test_rev_comp.py ├── sample_data └── KI270394.fa ├── setup.cfg └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/.gitignore -------------------------------------------------------------------------------- /.pypirc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/.pypirc -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/.travis.yml -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/README.md -------------------------------------------------------------------------------- /motif_scraper/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/__init__.py -------------------------------------------------------------------------------- /motif_scraper/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/__main__.py -------------------------------------------------------------------------------- /motif_scraper/tests/test.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/tests/test.fa -------------------------------------------------------------------------------- /motif_scraper/tests/test.fa.fai: -------------------------------------------------------------------------------- 1 | test_a 240 8 10 11 2 | -------------------------------------------------------------------------------- /motif_scraper/tests/test_SequenceMotif.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/tests/test_SequenceMotif.py -------------------------------------------------------------------------------- /motif_scraper/tests/test_fasta_motif_scan.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/tests/test_fasta_motif_scan.py -------------------------------------------------------------------------------- /motif_scraper/tests/test_make_degenerate_regex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/tests/test_make_degenerate_regex.py -------------------------------------------------------------------------------- /motif_scraper/tests/test_rev_comp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/motif_scraper/tests/test_rev_comp.py -------------------------------------------------------------------------------- /sample_data/KI270394.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/sample_data/KI270394.fa -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- 1 | [metadata] 2 | description-file = README.md 3 | 4 | -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/RobersonLab/motif_scraper/HEAD/setup.py --------------------------------------------------------------------------------