├── .gitignore ├── COMMUNICATION.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── config.example.yml ├── core ├── benchmark.py ├── config.py ├── dataloaders.py ├── models.py └── preprocessing.py ├── environment.yml ├── scripts ├── 00_bidsify_tuab.ipynb ├── 01_process_tuab.ipynb ├── 02_process_tdbrain.ipynb └── 03_run_benchmarks.ipynb └── setup.py /.gitignore: -------------------------------------------------------------------------------- 1 | __pycache__/ 2 | *.egg-info/ 3 | config.yml -------------------------------------------------------------------------------- /COMMUNICATION.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/COMMUNICATION.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/README.md -------------------------------------------------------------------------------- /config.example.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/config.example.yml -------------------------------------------------------------------------------- /core/benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/core/benchmark.py -------------------------------------------------------------------------------- /core/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/core/config.py -------------------------------------------------------------------------------- /core/dataloaders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/core/dataloaders.py -------------------------------------------------------------------------------- /core/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/core/models.py -------------------------------------------------------------------------------- /core/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/core/preprocessing.py -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/environment.yml -------------------------------------------------------------------------------- /scripts/00_bidsify_tuab.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/scripts/00_bidsify_tuab.ipynb -------------------------------------------------------------------------------- /scripts/01_process_tuab.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/scripts/01_process_tuab.ipynb -------------------------------------------------------------------------------- /scripts/02_process_tdbrain.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/scripts/02_process_tdbrain.ipynb -------------------------------------------------------------------------------- /scripts/03_run_benchmarks.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/scripts/03_run_benchmarks.ipynb -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Roche/neuro-meeglet-paper/HEAD/setup.py --------------------------------------------------------------------------------