├── .gitignore ├── LICENSE ├── README.md ├── bin ├── cctyper ├── repeatTrain └── repeatType ├── cctyper ├── __init__.py ├── blast.py ├── castyping.py ├── controller.py ├── crisprcas.py ├── hmmer.py ├── minced.py ├── plot.py ├── prodigal.py ├── repeat.py ├── xgb.py └── xgbtrain.py ├── data ├── CasScoring.csv ├── Profiles.tar.gz ├── adaptation.json ├── cutoffs.tab ├── interference.json ├── repeats.fa ├── type_dict.tab └── xgb_repeats.model ├── img ├── plot.svg └── plot2.svg └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Russel88/CRISPRCasTyper/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Russel88/CRISPRCasTyper/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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