├── .github └── workflows │ └── dockerimage.yml ├── .gitignore ├── Dockerfile ├── LICENSE ├── OSS-DBS - tutorial.pdf ├── OSS_platform ├── Axon_files │ ├── NEURON_direct_run.py │ ├── Parameter_insertion_python3.py │ ├── Reilly2016 │ │ ├── Fig1.png │ │ ├── NEURON_Reilly2016.py │ │ ├── Parameter_insertion_python3.py │ │ ├── axon10.hoc │ │ ├── axon5.hoc │ │ ├── basicrig.ses │ │ ├── fh.mod │ │ ├── fsquare.mod │ │ ├── fzap.mod │ │ ├── initA.hoc │ │ ├── initB10.hoc │ │ ├── initB5.hoc │ │ ├── init_B10_extracellular.hoc │ │ ├── init_B5_extracellular.hoc │ │ ├── interpxyz.hoc │ │ ├── mosinit.hoc │ │ ├── protocolsA.hoc │ │ ├── protocolsB.hoc │ │ ├── readme.html │ │ ├── readme_Butenko.txt │ │ ├── screenshot2.png │ │ ├── thresh4.hoc │ │ ├── varstep.ses │ │ ├── vext_eext.ses │ │ ├── vvsx.ses │ │ └── xstim.mod │ ├── __init__.py │ ├── axnode.mod │ ├── axon.py │ ├── axon4pyfull.hoc │ └── readme_McIntyre2002.txt ├── Brain_substitute.py ├── CAD_Salome.py ├── CSF_refinement_new.py ├── Dict_corrector.py ├── Electrode_files │ ├── Boston_Scientific_Vercise_Cartesia_floating_profile.py │ ├── Boston_Scientific_Vercise_Cartesia_profile.py │ ├── Boston_Scientific_Vercise_floating_profile.py │ ├── Boston_Scientific_Vercise_profile.py │ ├── CEAX100_new_profile.py │ ├── CEAX100_profile.py │ ├── DBS_lead_position_V10.py │ ├── How_to_create_profile.docx │ ├── Medtronic3387_floating_profile.py │ ├── Medtronic3387_profile.py │ ├── Medtronic3389_floating_profile.py │ ├── Medtronic3389_profile.py │ ├── Medtronic3391_floating_profile.py │ ├── Medtronic3391_profile.py │ ├── PINS_L301_floating_profile.py │ ├── PINS_L301_profile.py │ ├── PINS_L302_floating_profile.py │ ├── PINS_L302_profile.py │ ├── PINS_L303_floating_profile.py │ ├── PINS_L303_profile.py │ ├── Profile_Process_V6.py │ ├── QM_blunt_profile.py │ ├── QM_spherical_rounding_profile.py │ ├── SNEX100_profile.py │ ├── St_Jude6142_floating_profile.py │ ├── St_Jude6142_profile.py │ ├── St_Jude6148_floating_profile.py │ ├── St_Jude6148_profile.py │ ├── St_Jude6173_floating_profile.py │ ├── St_Jude6173_profile.py │ ├── St_Jude6180_floating_profile.py │ ├── St_Jude6180_profile.py │ └── Template_profile.py ├── Example_files │ ├── .gitkeep │ ├── Direct_VTA_estimation │ │ ├── .gitkeep │ │ ├── Example_dict_SRI.py │ │ ├── Human_Brain_from_SRI24.brep.zip │ │ ├── References.txt │ │ └── SRI24_Rohlfing_segmented.txt.zip │ ├── Dummy_DTI.txt │ ├── Dummy_MRI.txt │ ├── Example_dict_quick_test.py │ ├── Neural_activation_in_basal_ganglia │ │ ├── .gitkeep │ │ ├── Basal_ganlia_axons_corrected.h5 │ │ ├── Example_dict_MNI.py │ │ ├── References.txt │ │ └── icbm_avg_152_segmented.nii.gz │ ├── Publication results │ │ ├── .gitkeep │ │ ├── Benchmarking │ │ │ ├── .gitkeep │ │ │ ├── CC_pathway_dict.py │ │ │ ├── COMSOL_benchmarking_human.zip │ │ │ ├── COMSOL_benchmarking_rat.zip │ │ │ ├── GUI_soma_STN.py │ │ │ ├── MRI_stuff.tar.xz │ │ │ ├── Ordered_neuron_array.csv │ │ │ ├── STN_axons_array.csv │ │ │ ├── VC_ordered_array_dict.py │ │ │ └── readme │ │ └── Evaluation_of_Physics_in_VCM │ │ │ ├── .gitkeep │ │ │ ├── GUI_inp_dict_CPE.py │ │ │ ├── GUI_inp_dict_EQS_QS.py │ │ │ └── readme │ └── Stimulation_in_rat_model │ │ ├── .gitkeep │ │ ├── Example_dict_Waxholm.py │ │ ├── References.txt │ │ ├── Waxholm_Papp_ROI_DTI.txt │ │ └── Waxholm_Papp_ROI_MRI.txt ├── FEM_in_spectrum.py ├── FEM_in_spectrum_multicontact.py ├── Field_IFFT_on_different_axons.py ├── Full_IFFT_field_function.py ├── GUI_inp_dict.py ├── GUI_tree_files │ ├── .idea │ │ ├── .gitignore │ │ ├── OSSv2.01.iml │ │ ├── inspectionProfiles │ │ │ └── profiles_settings.xml │ │ ├── misc.xml │ │ └── modules.xml │ ├── AppUI.py │ ├── GUI.py │ ├── GUI.ui │ ├── GUI_tree_files │ │ ├── default_dict.py │ │ └── last_save.py │ ├── Header.py │ ├── UX │ │ ├── UX1_transparent.txt │ │ ├── dark.qss │ │ └── dark_new.qss │ ├── UiControl.py │ ├── __pycache__ │ │ ├── GUI.cpython-36.pyc │ │ ├── Header.cpython-36.pyc │ │ ├── functionalities.cpython-36.pyc │ │ ├── icons_rc.cpython-36.pyc │ │ ├── imgs_rc.cpython-36.pyc │ │ └── temp_dict.cpython-36.pyc │ ├── functionalities.py │ ├── icons.qrc │ ├── icons │ │ ├── Updated_OSS_DBS_logo.jpeg │ │ ├── ai.png │ │ ├── checkbox_checked_icon.png │ │ ├── checkbox_unchecked.png │ │ ├── cog.png │ │ ├── combobox.png │ │ ├── compass.png │ │ ├── computer-system.png │ │ ├── confirm.png │ │ ├── folder.png │ │ ├── gears.png │ │ ├── human-brain.png │ │ ├── image_placeholder.png │ │ ├── info.png │ │ ├── leftarrow.png │ │ ├── neuron.png │ │ ├── portfolio.png │ │ ├── reset-password.png │ │ ├── rightarrow.png │ │ ├── save.png │ │ ├── spindown.png │ │ └── spinup.png │ ├── icons_rc.py │ ├── imgs.qrc │ ├── imgs_rc.py │ ├── pop_up_control │ │ ├── __pycache__ │ │ │ ├── cpe_active.cpython-36.pyc │ │ │ ├── external_neuron_arrray.cpython-36.pyc │ │ │ ├── full_field_ifft.cpython-36.pyc │ │ │ └── mesh_refinement.cpython-36.pyc │ │ ├── cpe_active.py │ │ ├── dictionaries │ │ │ ├── dict_cpe_active.py │ │ │ ├── dict_external_neuron_array.py │ │ │ ├── dict_full_field_ifft.py │ │ │ └── dict_mesh_refinement.py │ │ ├── external_neuron_arrray.py │ │ ├── full_field_ifft.py │ │ └── mesh_refinement.py │ ├── pop_up_ui │ │ ├── GUI.py │ │ ├── __pycache__ │ │ │ ├── pop_up_CPE_Active.cpython-36.pyc │ │ │ ├── pop_up_External_Neuron_Array.cpython-36.pyc │ │ │ ├── pop_up_Full_Field_IFFT.cpython-36.pyc │ │ │ ├── pop_up_Mesh_Refinement.cpython-36.pyc │ │ │ └── pop_up_test.cpython-36.pyc │ │ ├── pop_up_CPE_Active.py │ │ ├── pop_up_CPE_Active.ui │ │ ├── pop_up_External_Neuron_Array.py │ │ ├── pop_up_External_Neuron_Array.ui │ │ ├── pop_up_Full_Field_IFFT.py │ │ ├── pop_up_Full_Field_IFFT.ui │ │ ├── pop_up_Mesh_Refinement.py │ │ └── pop_up_Mesh_Refinement.ui │ └── temp_dict.py ├── Launcher_OSS.py ├── Launcher_OSS_lite.py ├── MRI_DTI_prep_new.py ├── Math_module_MPI_only_FEniCS.py ├── Math_module_floating_MPI.py ├── Math_module_hybrid.py ├── Math_module_hybrid_floating.py ├── MeshTransfer.py ├── Mesh_adaption_hybrid.py ├── Neural_array_processing.py ├── Neuron_models_arangement_new.py ├── Parallel_field_calc.py ├── Parameter_insertion.py ├── Signal_generator.py ├── Sim_state.py ├── Tissue_marking_new.py ├── Truncation_of_spectrum.py ├── Visualization_files │ ├── Paraview_CSFref.py │ ├── Paraview_CSFunref.py │ ├── Paraview_InitMesh_and_Neurons.py │ ├── Paraview_adapted.py │ ├── Paraview_connections_activation.py │ ├── Paraview_connections_processed.py │ ├── Paraview_csv_activation.py │ ├── Paraview_csv_neurons.py │ ├── Paraview_field_CSF_ref.py │ └── paraview_find_arrayname.py ├── icbm_avg_152_segmented.nii.gz ├── icbm_reference.txt ├── plot_circuit.py ├── salomePort.txt ├── script.sh └── tissue_dielectrics.py ├── README.md └── docker ├── base └── Dockerfile ├── fenics19 └── Dockerfile └── python ├── Dockerfile └── requirements.txt /.github/workflows/dockerimage.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/.github/workflows/dockerimage.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | access-token.txt 2 | local-build.sh 3 | -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/LICENSE -------------------------------------------------------------------------------- /OSS-DBS - tutorial.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS-DBS - tutorial.pdf -------------------------------------------------------------------------------- /OSS_platform/Axon_files/NEURON_direct_run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/NEURON_direct_run.py -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Parameter_insertion_python3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Parameter_insertion_python3.py -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/Fig1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/Fig1.png -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/NEURON_Reilly2016.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/NEURON_Reilly2016.py -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/Parameter_insertion_python3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/Parameter_insertion_python3.py -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/axon10.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/axon10.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/axon5.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/axon5.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/basicrig.ses: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/basicrig.ses -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/fh.mod: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/fh.mod -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/fsquare.mod: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/fsquare.mod -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/fzap.mod: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/fzap.mod -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/initA.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/initA.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/initB10.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/initB10.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/initB5.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/initB5.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/init_B10_extracellular.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/init_B10_extracellular.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/init_B5_extracellular.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/init_B5_extracellular.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/interpxyz.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/interpxyz.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/mosinit.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/mosinit.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/protocolsA.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/protocolsA.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/protocolsB.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/protocolsB.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/readme.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/readme.html -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/readme_Butenko.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/readme_Butenko.txt -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/screenshot2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/screenshot2.png -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/thresh4.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/thresh4.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/varstep.ses: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/varstep.ses -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/vext_eext.ses: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/vext_eext.ses -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/vvsx.ses: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/vvsx.ses -------------------------------------------------------------------------------- /OSS_platform/Axon_files/Reilly2016/xstim.mod: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/Reilly2016/xstim.mod -------------------------------------------------------------------------------- /OSS_platform/Axon_files/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Axon_files/axnode.mod: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/axnode.mod -------------------------------------------------------------------------------- /OSS_platform/Axon_files/axon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/axon.py -------------------------------------------------------------------------------- /OSS_platform/Axon_files/axon4pyfull.hoc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/axon4pyfull.hoc -------------------------------------------------------------------------------- /OSS_platform/Axon_files/readme_McIntyre2002.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Axon_files/readme_McIntyre2002.txt -------------------------------------------------------------------------------- /OSS_platform/Brain_substitute.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Brain_substitute.py -------------------------------------------------------------------------------- /OSS_platform/CAD_Salome.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/CAD_Salome.py -------------------------------------------------------------------------------- /OSS_platform/CSF_refinement_new.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/CSF_refinement_new.py -------------------------------------------------------------------------------- /OSS_platform/Dict_corrector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Dict_corrector.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Boston_Scientific_Vercise_Cartesia_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Boston_Scientific_Vercise_Cartesia_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Boston_Scientific_Vercise_Cartesia_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Boston_Scientific_Vercise_Cartesia_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Boston_Scientific_Vercise_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Boston_Scientific_Vercise_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Boston_Scientific_Vercise_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Boston_Scientific_Vercise_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/CEAX100_new_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/CEAX100_new_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/CEAX100_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/CEAX100_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/DBS_lead_position_V10.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/DBS_lead_position_V10.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/How_to_create_profile.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/How_to_create_profile.docx -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3387_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3387_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3387_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3387_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3389_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3389_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3389_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3389_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3391_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3391_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Medtronic3391_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Medtronic3391_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L301_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L301_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L301_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L301_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L302_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L302_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L302_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L302_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L303_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L303_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/PINS_L303_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/PINS_L303_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Profile_Process_V6.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Profile_Process_V6.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/QM_blunt_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/QM_blunt_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/QM_spherical_rounding_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/QM_spherical_rounding_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/SNEX100_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/SNEX100_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6142_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6142_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6142_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6142_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6148_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6148_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6148_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6148_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6173_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6173_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6173_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6173_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6180_floating_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6180_floating_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/St_Jude6180_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/St_Jude6180_profile.py -------------------------------------------------------------------------------- /OSS_platform/Electrode_files/Template_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Electrode_files/Template_profile.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Direct_VTA_estimation/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Direct_VTA_estimation/Example_dict_SRI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Direct_VTA_estimation/Example_dict_SRI.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Direct_VTA_estimation/Human_Brain_from_SRI24.brep.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Direct_VTA_estimation/Human_Brain_from_SRI24.brep.zip -------------------------------------------------------------------------------- /OSS_platform/Example_files/Direct_VTA_estimation/References.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Direct_VTA_estimation/References.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Direct_VTA_estimation/SRI24_Rohlfing_segmented.txt.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Direct_VTA_estimation/SRI24_Rohlfing_segmented.txt.zip -------------------------------------------------------------------------------- /OSS_platform/Example_files/Dummy_DTI.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Dummy_DTI.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Dummy_MRI.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Dummy_MRI.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Example_dict_quick_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Example_dict_quick_test.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Neural_activation_in_basal_ganglia/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Neural_activation_in_basal_ganglia/Basal_ganlia_axons_corrected.h5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Neural_activation_in_basal_ganglia/Basal_ganlia_axons_corrected.h5 -------------------------------------------------------------------------------- /OSS_platform/Example_files/Neural_activation_in_basal_ganglia/Example_dict_MNI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Neural_activation_in_basal_ganglia/Example_dict_MNI.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Neural_activation_in_basal_ganglia/References.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Neural_activation_in_basal_ganglia/References.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Neural_activation_in_basal_ganglia/icbm_avg_152_segmented.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Neural_activation_in_basal_ganglia/icbm_avg_152_segmented.nii.gz -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/CC_pathway_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/CC_pathway_dict.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/COMSOL_benchmarking_human.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/COMSOL_benchmarking_human.zip -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/COMSOL_benchmarking_rat.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/COMSOL_benchmarking_rat.zip -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/GUI_soma_STN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/GUI_soma_STN.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/MRI_stuff.tar.xz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/MRI_stuff.tar.xz -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/Ordered_neuron_array.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/Ordered_neuron_array.csv -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/STN_axons_array.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/STN_axons_array.csv -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/VC_ordered_array_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/VC_ordered_array_dict.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Benchmarking/readme: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Benchmarking/readme -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/GUI_inp_dict_CPE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/GUI_inp_dict_CPE.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/GUI_inp_dict_EQS_QS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/GUI_inp_dict_EQS_QS.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/readme: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Publication results/Evaluation_of_Physics_in_VCM/readme -------------------------------------------------------------------------------- /OSS_platform/Example_files/Stimulation_in_rat_model/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/Example_files/Stimulation_in_rat_model/Example_dict_Waxholm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Stimulation_in_rat_model/Example_dict_Waxholm.py -------------------------------------------------------------------------------- /OSS_platform/Example_files/Stimulation_in_rat_model/References.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Stimulation_in_rat_model/References.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Stimulation_in_rat_model/Waxholm_Papp_ROI_DTI.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Stimulation_in_rat_model/Waxholm_Papp_ROI_DTI.txt -------------------------------------------------------------------------------- /OSS_platform/Example_files/Stimulation_in_rat_model/Waxholm_Papp_ROI_MRI.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Example_files/Stimulation_in_rat_model/Waxholm_Papp_ROI_MRI.txt -------------------------------------------------------------------------------- /OSS_platform/FEM_in_spectrum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/FEM_in_spectrum.py -------------------------------------------------------------------------------- /OSS_platform/FEM_in_spectrum_multicontact.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/FEM_in_spectrum_multicontact.py -------------------------------------------------------------------------------- /OSS_platform/Field_IFFT_on_different_axons.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Field_IFFT_on_different_axons.py -------------------------------------------------------------------------------- /OSS_platform/Full_IFFT_field_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Full_IFFT_field_function.py -------------------------------------------------------------------------------- /OSS_platform/GUI_inp_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_inp_dict.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/.idea/.gitignore: -------------------------------------------------------------------------------- 1 | # Default ignored files 2 | /shelf/ 3 | /workspace.xml 4 | -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/.idea/OSSv2.01.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/.idea/OSSv2.01.iml -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/.idea/inspectionProfiles/profiles_settings.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/.idea/inspectionProfiles/profiles_settings.xml -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/.idea/misc.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/.idea/misc.xml -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/.idea/modules.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/.idea/modules.xml -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/AppUI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/AppUI.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/GUI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/GUI.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/GUI.ui: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/GUI.ui -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/GUI_tree_files/default_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/GUI_tree_files/default_dict.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/GUI_tree_files/last_save.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/GUI_tree_files/last_save.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/Header.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/Header.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/UX/UX1_transparent.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/UX/UX1_transparent.txt -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/UX/dark.qss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/UX/dark.qss -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/UX/dark_new.qss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/UX/dark_new.qss -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/UiControl.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/GUI.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/GUI.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/Header.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/Header.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/functionalities.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/functionalities.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/icons_rc.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/icons_rc.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/imgs_rc.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/imgs_rc.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/__pycache__/temp_dict.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/__pycache__/temp_dict.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/functionalities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/functionalities.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons.qrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons.qrc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/Updated_OSS_DBS_logo.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/Updated_OSS_DBS_logo.jpeg -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/ai.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/ai.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/checkbox_checked_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/checkbox_checked_icon.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/checkbox_unchecked.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/checkbox_unchecked.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/cog.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/cog.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/combobox.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/combobox.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/compass.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/compass.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/computer-system.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/computer-system.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/confirm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/confirm.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/folder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/folder.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/gears.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/gears.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/human-brain.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/human-brain.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/image_placeholder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/image_placeholder.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/info.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/info.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/leftarrow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/leftarrow.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/neuron.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/neuron.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/portfolio.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/portfolio.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/reset-password.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/reset-password.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/rightarrow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/rightarrow.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/save.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/save.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/spindown.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/spindown.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons/spinup.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons/spinup.png -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/icons_rc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/icons_rc.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/imgs.qrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/imgs.qrc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/imgs_rc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/imgs_rc.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/__pycache__/cpe_active.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/__pycache__/cpe_active.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/__pycache__/external_neuron_arrray.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/__pycache__/external_neuron_arrray.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/__pycache__/full_field_ifft.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/__pycache__/full_field_ifft.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/__pycache__/mesh_refinement.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/__pycache__/mesh_refinement.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/cpe_active.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/cpe_active.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_cpe_active.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_cpe_active.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_external_neuron_array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_external_neuron_array.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_full_field_ifft.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_full_field_ifft.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_mesh_refinement.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/dictionaries/dict_mesh_refinement.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/external_neuron_arrray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/external_neuron_arrray.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/full_field_ifft.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/full_field_ifft.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_control/mesh_refinement.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_control/mesh_refinement.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/GUI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/GUI.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_CPE_Active.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_CPE_Active.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_External_Neuron_Array.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_External_Neuron_Array.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_Full_Field_IFFT.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_Full_Field_IFFT.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_Mesh_Refinement.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_Mesh_Refinement.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_test.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/__pycache__/pop_up_test.cpython-36.pyc -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_CPE_Active.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_CPE_Active.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_CPE_Active.ui: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_CPE_Active.ui -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_External_Neuron_Array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_External_Neuron_Array.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_External_Neuron_Array.ui: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_External_Neuron_Array.ui -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Full_Field_IFFT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Full_Field_IFFT.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Full_Field_IFFT.ui: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Full_Field_IFFT.ui -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Mesh_Refinement.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Mesh_Refinement.py -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Mesh_Refinement.ui: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/pop_up_ui/pop_up_Mesh_Refinement.ui -------------------------------------------------------------------------------- /OSS_platform/GUI_tree_files/temp_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/GUI_tree_files/temp_dict.py -------------------------------------------------------------------------------- /OSS_platform/Launcher_OSS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Launcher_OSS.py -------------------------------------------------------------------------------- /OSS_platform/Launcher_OSS_lite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Launcher_OSS_lite.py -------------------------------------------------------------------------------- /OSS_platform/MRI_DTI_prep_new.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/MRI_DTI_prep_new.py -------------------------------------------------------------------------------- /OSS_platform/Math_module_MPI_only_FEniCS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Math_module_MPI_only_FEniCS.py -------------------------------------------------------------------------------- /OSS_platform/Math_module_floating_MPI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Math_module_floating_MPI.py -------------------------------------------------------------------------------- /OSS_platform/Math_module_hybrid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Math_module_hybrid.py -------------------------------------------------------------------------------- /OSS_platform/Math_module_hybrid_floating.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Math_module_hybrid_floating.py -------------------------------------------------------------------------------- /OSS_platform/MeshTransfer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/MeshTransfer.py -------------------------------------------------------------------------------- /OSS_platform/Mesh_adaption_hybrid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Mesh_adaption_hybrid.py -------------------------------------------------------------------------------- /OSS_platform/Neural_array_processing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Neural_array_processing.py -------------------------------------------------------------------------------- /OSS_platform/Neuron_models_arangement_new.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Neuron_models_arangement_new.py -------------------------------------------------------------------------------- /OSS_platform/Parallel_field_calc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Parallel_field_calc.py -------------------------------------------------------------------------------- /OSS_platform/Parameter_insertion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Parameter_insertion.py -------------------------------------------------------------------------------- /OSS_platform/Signal_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Signal_generator.py -------------------------------------------------------------------------------- /OSS_platform/Sim_state.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Sim_state.py -------------------------------------------------------------------------------- /OSS_platform/Tissue_marking_new.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Tissue_marking_new.py -------------------------------------------------------------------------------- /OSS_platform/Truncation_of_spectrum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Truncation_of_spectrum.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_CSFref.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_CSFref.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_CSFunref.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_CSFunref.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_InitMesh_and_Neurons.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_InitMesh_and_Neurons.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_adapted.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_adapted.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_connections_activation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_connections_activation.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_connections_processed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_connections_processed.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_csv_activation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_csv_activation.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_csv_neurons.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_csv_neurons.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/Paraview_field_CSF_ref.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/Paraview_field_CSF_ref.py -------------------------------------------------------------------------------- /OSS_platform/Visualization_files/paraview_find_arrayname.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/Visualization_files/paraview_find_arrayname.py -------------------------------------------------------------------------------- /OSS_platform/icbm_avg_152_segmented.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/icbm_avg_152_segmented.nii.gz -------------------------------------------------------------------------------- /OSS_platform/icbm_reference.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/icbm_reference.txt -------------------------------------------------------------------------------- /OSS_platform/plot_circuit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/plot_circuit.py -------------------------------------------------------------------------------- /OSS_platform/salomePort.txt: -------------------------------------------------------------------------------- 1 | 2810 -------------------------------------------------------------------------------- /OSS_platform/script.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/script.sh -------------------------------------------------------------------------------- /OSS_platform/tissue_dielectrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/OSS_platform/tissue_dielectrics.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | ### We have evolved, please see 2 | https://github.com/SFB-ELAINE/OSS-DBSv2/tree/main 3 | -------------------------------------------------------------------------------- /docker/base/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/docker/base/Dockerfile -------------------------------------------------------------------------------- /docker/fenics19/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/docker/fenics19/Dockerfile -------------------------------------------------------------------------------- /docker/python/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/docker/python/Dockerfile -------------------------------------------------------------------------------- /docker/python/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SFB-ELAINE/OSS-DBS/HEAD/docker/python/requirements.txt --------------------------------------------------------------------------------