├── Heart.rda ├── Old_files_archive ├── SISBID_3_1.pdf ├── SISBID_3_2.pdf ├── SISBID_3_3.pdf ├── SISBID_3_4.pdf ├── SISBID_3_5.pdf ├── SISBID_3_6.pdf └── SISBID_3_6_Rscript.R ├── R-labs.zip ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4-batch.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf ├── SISBID8.pdf ├── SISBID8_lab.pdf ├── Survival-slides.pdf ├── additional-code.zip ├── additional-data.zip ├── archive-2016 ├── SISBID4-1.pdf ├── SISBID4-2.pdf ├── SISBID4-3.pdf ├── SISBID4-4.pdf ├── SISBID4-5.pdf └── SISBID4-6.pdf ├── archive-2017 ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf └── readme.txt ├── archive-2018 ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf └── SISBID7.pdf ├── archive-2019 ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf └── SISBID8.pdf ├── archive2020 ├── ... ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4-batch.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf └── SISBID8.pdf ├── archive2021 ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4-batch.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf └── SISBID8.pdf ├── archive2022 ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4-batch.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf └── SISBID8.pdf ├── archive2023 ├── NN-code-nodata.zip ├── SISBID1.pdf ├── SISBID2.pdf ├── SISBID3.pdf ├── SISBID4-batch.pdf ├── SISBID4.pdf ├── SISBID5.pdf ├── SISBID6.pdf ├── SISBID7.pdf └── SISBID8.pdf └── readme.md /Heart.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Heart.rda -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_1.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_2.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_3.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_4.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_5.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Old_files_archive/SISBID_3_6.pdf -------------------------------------------------------------------------------- /Old_files_archive/SISBID_3_6_Rscript.R: -------------------------------------------------------------------------------- 1 | X = t(read.table("http://www.broadinstitute.org/mpr/publications/projects/NMF/ALL_AML_data.txt")) 2 | y = read.table("http://www.broadinstitute.org/mpr/publications/projects/NMF/ALL_AML_samples.txt", sep = "\t")[[1]] 3 | AMLvsALL = substr(y,1,3) 4 | vars = apply(X,2,var) 5 | remove = which(vars < 0.001) 6 | pvals = apply(X[,-remove],2,function(x){t.test(x[AMLvsALL=="ALL"],x[AMLvsALL=="AML"])$p.value}) 7 | stats = apply(X[,-remove],2,function(x){t.test(x[AMLvsALL=="ALL"],x[AMLvsALL=="AML"])$statistic}) 8 | 9 | par(mfrow = c(2,1)) 10 | hist(pvals, freq = FALSE,breaks = 30) 11 | abline(h=1, col = "red") 12 | hist(stats, freq = FALSE,breaks = 30, ylim = c(0,0.4)) 13 | grid = seq(-4,4,length.out = 1000) 14 | lines(grid, dnorm(grid), col = "red", type='l') 15 | 16 | p.bon = p.adjust(pvals, "bonferroni") 17 | fdr.bh = p.adjust(pvals, "BH") 18 | fdr.by = p.adjust(pvals, "BY") 19 | log(4812) 20 | plot(1:100, sort(p.bon,decreasing = FALSE)[1:100], type = 'l', col = 1) 21 | 22 | plot(1:4812, sort(fdr.bh,decreasing = FALSE), type = 'l', col = 1) 23 | lines(1:4812, sort(fdr.by,decreasing = FALSE), type = 'l', col = 2) 24 | 25 | AMLvALL_TvALL_B = sapply(as.character(y), function(x){paste0(strsplit(x, '_')[[1]][-2],collapse="")}) 26 | 27 | pvals3 = apply(X[,-remove],2,function(x){ 28 | f = summary(lm(x~AMLvALL_TvALL_B))$fstatistic 29 | p.val = pf(f[1],f[2],f[3],lower.tail=F) 30 | }) 31 | stats3 = apply(X[,-remove],2,function(x){ 32 | f = summary(lm(x~AMLvALL_TvALL_B))$fstatistic 33 | }) 34 | par(mfrow = c(2,1)) 35 | hist(pvals3, freq = FALSE,breaks = 30) 36 | abline(h=1, col = "red") 37 | hist(stats3[1,], freq = FALSE,breaks = 300, ylim = c(0,0.6), xlim = c(0,20)) 38 | grid = seq(0.001,10,length.out = 1000) 39 | lines(grid, df(grid,2,35), col = "red", type='l') 40 | 41 | 42 | 43 | p.bon3 = p.adjust(pvals3, "bonferroni") 44 | fdr.bh3 = p.adjust(pvals3, "BH") 45 | fdr.by3 = p.adjust(pvals3, "BY") 46 | plot(1:100, sort(p.bon3,decreasing = FALSE)[1:100], type = 'l', col = 1) 47 | 48 | plot(1:4812, sort(fdr.bh3,decreasing = FALSE), type = 'l', col = 1) 49 | lines(1:4812, sort(fdr.by3,decreasing = FALSE), type = 'l', col = 2) 50 | -------------------------------------------------------------------------------- /R-labs.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/R-labs.zip -------------------------------------------------------------------------------- /SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID1.pdf -------------------------------------------------------------------------------- /SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID2.pdf -------------------------------------------------------------------------------- /SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID3.pdf -------------------------------------------------------------------------------- /SISBID4-batch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID4-batch.pdf -------------------------------------------------------------------------------- /SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID4.pdf -------------------------------------------------------------------------------- /SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID5.pdf -------------------------------------------------------------------------------- /SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID6.pdf -------------------------------------------------------------------------------- /SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID7.pdf -------------------------------------------------------------------------------- /SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID8.pdf -------------------------------------------------------------------------------- /SISBID8_lab.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/SISBID8_lab.pdf -------------------------------------------------------------------------------- /Survival-slides.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/Survival-slides.pdf -------------------------------------------------------------------------------- /additional-code.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/additional-code.zip -------------------------------------------------------------------------------- /additional-data.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/additional-data.zip -------------------------------------------------------------------------------- /archive-2016/SISBID4-1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-1.pdf -------------------------------------------------------------------------------- /archive-2016/SISBID4-2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-2.pdf -------------------------------------------------------------------------------- /archive-2016/SISBID4-3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-3.pdf -------------------------------------------------------------------------------- /archive-2016/SISBID4-4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-4.pdf -------------------------------------------------------------------------------- /archive-2016/SISBID4-5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-5.pdf -------------------------------------------------------------------------------- /archive-2016/SISBID4-6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2016/SISBID4-6.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID1.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID2.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID3.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID4.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID5.pdf -------------------------------------------------------------------------------- /archive-2017/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2017/SISBID6.pdf -------------------------------------------------------------------------------- /archive-2017/readme.txt: -------------------------------------------------------------------------------- 1 | This folder contains material from 2017 offering of the module on Supervised Methods for Statistical Machine Learning. 2 | -------------------------------------------------------------------------------- /archive-2018/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID1.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID2.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID3.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID4.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID5.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID6.pdf -------------------------------------------------------------------------------- /archive-2018/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2018/SISBID7.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID1.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID2.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID3.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID4.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID5.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID6.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID7.pdf -------------------------------------------------------------------------------- /archive-2019/SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive-2019/SISBID8.pdf -------------------------------------------------------------------------------- /archive2020/...: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /archive2020/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID1.pdf -------------------------------------------------------------------------------- /archive2020/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID2.pdf -------------------------------------------------------------------------------- /archive2020/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID3.pdf -------------------------------------------------------------------------------- /archive2020/SISBID4-batch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID4-batch.pdf -------------------------------------------------------------------------------- /archive2020/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID4.pdf -------------------------------------------------------------------------------- /archive2020/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID5.pdf -------------------------------------------------------------------------------- /archive2020/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID6.pdf -------------------------------------------------------------------------------- /archive2020/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID7.pdf -------------------------------------------------------------------------------- /archive2020/SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2020/SISBID8.pdf -------------------------------------------------------------------------------- /archive2021/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID1.pdf -------------------------------------------------------------------------------- /archive2021/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID2.pdf -------------------------------------------------------------------------------- /archive2021/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID3.pdf -------------------------------------------------------------------------------- /archive2021/SISBID4-batch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID4-batch.pdf -------------------------------------------------------------------------------- /archive2021/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID4.pdf -------------------------------------------------------------------------------- /archive2021/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID5.pdf -------------------------------------------------------------------------------- /archive2021/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID6.pdf -------------------------------------------------------------------------------- /archive2021/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID7.pdf -------------------------------------------------------------------------------- /archive2021/SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2021/SISBID8.pdf -------------------------------------------------------------------------------- /archive2022/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID1.pdf -------------------------------------------------------------------------------- /archive2022/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID2.pdf -------------------------------------------------------------------------------- /archive2022/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID3.pdf -------------------------------------------------------------------------------- /archive2022/SISBID4-batch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID4-batch.pdf -------------------------------------------------------------------------------- /archive2022/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID4.pdf -------------------------------------------------------------------------------- /archive2022/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID5.pdf -------------------------------------------------------------------------------- /archive2022/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID6.pdf -------------------------------------------------------------------------------- /archive2022/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID7.pdf -------------------------------------------------------------------------------- /archive2022/SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2022/SISBID8.pdf -------------------------------------------------------------------------------- /archive2023/NN-code-nodata.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/NN-code-nodata.zip -------------------------------------------------------------------------------- /archive2023/SISBID1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID1.pdf -------------------------------------------------------------------------------- /archive2023/SISBID2.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID2.pdf -------------------------------------------------------------------------------- /archive2023/SISBID3.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID3.pdf -------------------------------------------------------------------------------- /archive2023/SISBID4-batch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID4-batch.pdf -------------------------------------------------------------------------------- /archive2023/SISBID4.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID4.pdf -------------------------------------------------------------------------------- /archive2023/SISBID5.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID5.pdf -------------------------------------------------------------------------------- /archive2023/SISBID6.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID6.pdf -------------------------------------------------------------------------------- /archive2023/SISBID7.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID7.pdf -------------------------------------------------------------------------------- /archive2023/SISBID8.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SISBID/Supervised-Learning/5efa61b8dc6cb8eda81b00ec3ebb07c82c2f10bc/archive2023/SISBID8.pdf -------------------------------------------------------------------------------- /readme.md: -------------------------------------------------------------------------------- 1 | This repository contains material for SISBID module on Supervised Methods for Statistical Machine Learning. 2 | 3 | Please note that the module numbers may change in different years when SISBID is offered. Therefore, the past material for this module are archived under the name "Module 4". However, the content corresponds to mateiral for the Supervised Machine Learning module. 4 | 5 | ## Pre-Recorded Lectures 6 | 7 | We have pre-recorded some of the lectures. Links to these *pre-recorded lectures* are given below (the password for accessing these files will be sent to participants separately): 8 | 9 | - SISBID Pre-Recorded Video 1: [Introduction](https://www.dropbox.com/s/t9yrnrgjqsyva2q/PrerecordedLecture1_Intro.mov?dl=0) 10 | 11 | - SISBID Pre-Recorded Video 2: [R Lab 1](https://www.dropbox.com/s/l6zf4kzlgo4o6u4/PrerecordedLecture2_Rlab1.mp4?dl=0) 12 | 13 | - SISBID Pre-Recorded Video 3: [R Lab 2](https://www.dropbox.com/s/r1n86c213qifca1/PrerecordedLecture3_Rlab2.mp4?dl=0) 14 | 15 | - SISBID Pre-Recorded Video 4: [Batch Effects](https://www.dropbox.com/s/0tz3pewgd3izc4m/PrerecordedLecture4_BatchEffects.mov?dl=0) 16 | 17 | Please watch videos 1-3 (all related to the first set of slides, SISBID1.pdf) before the first class. You can watch video 4, on batch effects, at any point -- we wil briefly go over the topic after the lecture on classification, but will not discuss it extensively. 18 | 19 | Finally, here is one more pre-recorded lecture: 20 | 21 | - SISBID Pre-Recorded Video 5: [slide set 6](https://www.dropbox.com/sh/4lsie7clnkgfz8m/AADSwFRNAXIzsyEUPHbl1Cqra?dl=0) (methods for other data types) 22 | 23 | ## Videos from Live Lectures 24 | 25 | Here are the videos from live lectures (password required): 26 | 27 | 1. Day 1 (Monday Aug 19th, 8am-2:30pm PT): [Regression+Classification](https://washington.zoom.us/rec/share/LNl23wwbvJLxUtQWkVzGR5CO20zrWjTzsr9H3PBfUGaTXrb340IqU3PtSOnDCCcc.zSZNInA6nyuLVI_h) 28 | 29 | 2. Day 2 (Tuesday Aug 20th, 8am-2:30pm PT): [Classification+Tree-Based Methods](https://washington.zoom.us/rec/share/JRGNXXh2vg72t8i95DX_qpR6hjSI7xFT9i2NFCLuzRgvlQaqJ57wYuw8IFjRyVGq.rK9wQwqMQ23oXkc8) 30 | 31 | 3. Day 3 (Wednesday Aug 21st, 8am-11:30am PT): [Deep Neural Nets](https://washington.zoom.us/rec/share/zVuvYHymwPpRbZnwI5dJD6TpzC4hUzwuZ1E9RmJXmydPxD80ETb4CCCrXf8hatj-.VZCaU0fvcAHUUjRz) 32 | --------------------------------------------------------------------------------