├── data ├── __init__.py ├── models │ ├── M31.MOD │ ├── GLEAM_EGC.fits │ ├── Gleam_ReadMe.txt │ ├── M31.model.fits │ ├── SKA1_LOW_beam.fits │ ├── VLA_A_hor_xyz.txt │ ├── MID_GAUSS_VP_imag.fits │ ├── MID_GAUSS_VP_real.fits │ ├── MID_GRASP_VP_imag.fits │ ├── MID_GRASP_VP_real.fits │ ├── S3_151MHz_10deg.csv │ ├── S3_151MHz_20deg.csv │ ├── S3_151MHz_40deg.csv │ ├── create_test_mpc_screen.py │ ├── degraded │ │ ├── El15Az0.dat │ │ ├── El15Az135.dat │ │ ├── El15Az180.dat │ │ ├── El15Az45.dat │ │ ├── El15Az90.dat │ │ ├── El45Az0.dat │ │ ├── El45Az135.dat │ │ ├── El45Az180.dat │ │ ├── El45Az45.dat │ │ ├── El45Az90.dat │ │ ├── El90Az0.dat │ │ ├── El90Az135.dat │ │ ├── El90Az180.dat │ │ ├── El90Az45.dat │ │ └── El90Az90.dat │ ├── precision │ │ ├── El15Az0.dat │ │ ├── El15Az135.dat │ │ ├── El15Az180.dat │ │ ├── El15Az45.dat │ │ ├── El15Az90.dat │ │ ├── El45Az0.dat │ │ ├── El45Az135.dat │ │ ├── El45Az180.dat │ │ ├── El45Az45.dat │ │ ├── El45Az90.dat │ │ ├── El90Az0.dat │ │ ├── El90Az135.dat │ │ ├── El90Az180.dat │ │ ├── El90Az45.dat │ │ └── El90Az90.dat │ ├── spatial │ │ └── El45Az135.dat │ ├── standard │ │ ├── El15Az0.dat │ │ ├── El15Az135.dat │ │ ├── El15Az180.dat │ │ ├── El15Az45.dat │ │ ├── El15Az90.dat │ │ ├── El45Az0.dat │ │ ├── El45Az135.dat │ │ ├── El45Az180.dat │ │ ├── El45Az45.dat │ │ ├── El45Az90.dat │ │ ├── El90Az0.dat │ │ ├── El90Az135.dat │ │ ├── El90Az180.dat │ │ ├── El90Az45.dat │ │ └── El90Az90.dat │ ├── test_mpc_screen.fits │ ├── S3_1400MHz_1mJy_10deg.csv │ ├── S3_1400MHz_1mJy_18deg.csv │ ├── S3_1400MHz_100uJy_10deg.csv │ ├── S3_1400MHz_100uJy_18deg.csv │ ├── S3_1400MHz_10uJy_10deg.csv │ ├── SKA1-LOW_v5_single_random.tm.zip │ ├── MID_FEKO_VP_B1_45_0765_imag.fits │ ├── MID_FEKO_VP_B1_45_0765_real.fits │ ├── MID_FEKO_VP_B2_45_1360_imag.fits │ ├── MID_FEKO_VP_B2_45_1360_real.fits │ ├── MID_FEKO_VP_Ku_45_12179_imag.fits │ └── MID_FEKO_VP_Ku_45_12179_real.fits ├── vis │ ├── VLA_A_hor_xyz.txt │ ├── XCAS-UV.fits │ ├── sim-1.ms │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.f1 │ │ ├── table.f2 │ │ ├── table.f3 │ │ ├── table.f4 │ │ ├── table.f5 │ │ ├── table.f6 │ │ ├── table.info │ │ ├── table.lock │ │ ├── FEED │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FIELD │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── SOURCE │ │ │ ├── table.f0i │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── STATE │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── table.f3_TSM0 │ │ ├── table.f4_TSM0 │ │ ├── ANTENNA │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FLAG_CMD │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── HISTORY │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POINTING │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.f1 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── PROCESSOR │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── table.f2_TSM0 │ │ ├── table.f5_TSM0 │ │ ├── table.f6_TSM0 │ │ ├── OBSERVATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POLARIZATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── SPECTRAL_WINDOW │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ ├── table.f0i │ │ │ └── table.lock │ │ └── DATA_DESCRIPTION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ ├── sim-2.ms │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.f1 │ │ ├── table.f2 │ │ ├── table.f3 │ │ ├── table.f4 │ │ ├── table.f5 │ │ ├── table.f6 │ │ ├── table.info │ │ ├── table.lock │ │ ├── FEED │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FIELD │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── SOURCE │ │ │ ├── table.f0i │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── STATE │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── table.f3_TSM0 │ │ ├── table.f4_TSM0 │ │ ├── ANTENNA │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FLAG_CMD │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── HISTORY │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POINTING │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.f1 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── PROCESSOR │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── table.f2_TSM0 │ │ ├── table.f5_TSM0 │ │ ├── table.f6_TSM0 │ │ ├── OBSERVATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POLARIZATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── SPECTRAL_WINDOW │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ ├── table.f0i │ │ │ └── table.lock │ │ └── DATA_DESCRIPTION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ ├── vla_1src_6h │ │ ├── test.osm │ │ ├── test.ini │ │ ├── test_vla.txt │ │ ├── test_vla.vis │ │ ├── test_vla.ms │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.f2 │ │ │ ├── table.f3 │ │ │ ├── table.f4 │ │ │ ├── table.f5 │ │ │ ├── table.f6 │ │ │ ├── table.info │ │ │ ├── table.lock │ │ │ ├── FEED │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── FIELD │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ ├── SOURCE │ │ │ │ ├── table.f0i │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── STATE │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ ├── table.f1 │ │ │ ├── table.f6_TSM0 │ │ │ ├── ANTENNA │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── FLAG_CMD │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── HISTORY │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── POINTING │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.f1 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── PROCESSOR │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── table.f2_TSM0 │ │ │ ├── table.f3_TSM0 │ │ │ ├── table.f4_TSM0 │ │ │ ├── table.f5_TSM0 │ │ │ ├── OBSERVATION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── POLARIZATION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── SORTED_TABLE │ │ │ │ ├── table.dat │ │ │ │ └── table.info │ │ │ ├── SPECTRAL_WINDOW │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ └── DATA_DESCRIPTION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ ├── test_vla_dirty_01024_w000.fits │ │ ├── test_vla_dirty_01024_w256.fits │ │ └── test_vla_dirty_s1024_f03.0_w000.fits │ ├── xcasa.ms │ │ ├── table.f0 │ │ ├── table.f2 │ │ ├── table.f3 │ │ ├── table.f4 │ │ ├── table.f5 │ │ ├── table.f6 │ │ ├── table.f7 │ │ ├── table.f8 │ │ ├── table.info │ │ ├── table.lock │ │ ├── FEED │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FIELD │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── STATE │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ ├── table.dat │ │ ├── table.f1 │ │ ├── ANTENNA │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── FLAG_CMD │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── HISTORY │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POINTING │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.f1 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── PROCESSOR │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── SOURCE │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── table.f2_TSM1 │ │ ├── table.f3_TSM1 │ │ ├── table.f5_TSM1 │ │ ├── table.f6_TSM0 │ │ ├── table.f7_TSM1 │ │ ├── table.f8_TSM1 │ │ ├── OBSERVATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── POLARIZATION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ └── table.lock │ │ ├── SPECTRAL_WINDOW │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.info │ │ │ ├── table.dat │ │ │ └── table.lock │ │ └── DATA_DESCRIPTION │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.info │ │ │ └── table.lock │ ├── ASKAP_example.fits │ ├── at166B.3C129 │ │ ├── README.md │ │ ├── AT166B-psf.png │ │ ├── AT166B-image.png │ │ └── at166B.3C129.c0.vis │ ├── vla_grid_6h │ │ ├── test.ini │ │ ├── test_vla.txt │ │ ├── test_vla.vis │ │ ├── test_vla.ms │ │ │ ├── table.dat │ │ │ ├── table.f0 │ │ │ ├── table.f0i │ │ │ ├── table.f2 │ │ │ ├── table.f3 │ │ │ ├── table.f4 │ │ │ ├── table.f5 │ │ │ ├── table.f6 │ │ │ ├── table.info │ │ │ ├── table.lock │ │ │ ├── FEED │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── FIELD │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ ├── SOURCE │ │ │ │ ├── table.f0i │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── STATE │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ ├── table.f1 │ │ │ ├── table.f6_TSM0 │ │ │ ├── ANTENNA │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── FLAG_CMD │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── HISTORY │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── POINTING │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.f1 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── PROCESSOR │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── table.f2_TSM0 │ │ │ ├── table.f3_TSM0 │ │ │ ├── table.f4_TSM0 │ │ │ ├── table.f5_TSM0 │ │ │ ├── OBSERVATION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── POLARIZATION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ │ ├── SORTED_TABLE │ │ │ │ ├── table.dat │ │ │ │ └── table.info │ │ │ ├── SPECTRAL_WINDOW │ │ │ │ ├── table.f0 │ │ │ │ ├── table.f0i │ │ │ │ ├── table.info │ │ │ │ ├── table.dat │ │ │ │ └── table.lock │ │ │ └── DATA_DESCRIPTION │ │ │ │ ├── table.dat │ │ │ │ ├── table.f0 │ │ │ │ ├── table.info │ │ │ │ └── table.lock │ │ ├── test_vla_dirty_01024_w000.fits │ │ ├── test_vla_dirty_01024_w256.fits │ │ └── test_vla_dirty_s1024_f03.0_w000.fits │ └── ASKAP_example.ms │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.f1 │ │ ├── table.f2 │ │ ├── table.f3 │ │ ├── table.info │ │ ├── table.lock │ │ ├── ANTENNA │ │ ├── table.info │ │ ├── table.dat │ │ ├── table.f0 │ │ └── table.lock │ │ ├── FEED │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.info │ │ └── table.lock │ │ ├── FIELD │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.info │ │ └── table.lock │ │ ├── HISTORY │ │ ├── table.f0 │ │ ├── table.info │ │ ├── table.dat │ │ └── table.lock │ │ ├── STATE │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.info │ │ └── table.lock │ │ ├── table.f3_TSM1 │ │ ├── FLAG_CMD │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.info │ │ └── table.lock │ │ ├── OBSERVATION │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.info │ │ └── table.lock │ │ ├── POINTING │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.f1 │ │ ├── table.info │ │ └── table.lock │ │ ├── POLARIZATION │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.info │ │ ├── table.dat │ │ └── table.lock │ │ ├── PROCESSOR │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.info │ │ └── table.lock │ │ ├── table.f2_TSM1 │ │ ├── DATA_DESCRIPTION │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.info │ │ └── table.lock │ │ └── SPECTRAL_WINDOW │ │ ├── table.dat │ │ ├── table.f0 │ │ ├── table.f0i │ │ ├── table.info │ │ └── table.lock └── configurations │ ├── A27CR3P6B.in │ ├── ASKAP10.csv │ ├── LOFAR.csv │ ├── LOWBD1.csv │ ├── LOWBD2.csv │ ├── ska1mid.cfg │ ├── A27CR3P6B.in.csv │ ├── A27CR3P6BXYZ.in │ ├── LOWBD2-CORE.csv │ ├── VLA_A_hor_xyz.csv │ ├── ska1mid_local.cfg │ ├── A27CR3P6BXYZ.in.csv │ ├── V4Drsst512red_2.kml │ ├── ska1low_local.cfg │ ├── LOW_SKA-TEL-SKO-0000422_Rev3.txt │ └── MID_SKA-TEL-INSA-0000537_Rev05.txt ├── docs ├── ARL.graffle ├── Theory.pdf ├── dask_global.png ├── ARL_Module_View.png ├── ARL_functional.png ├── ARL_transitions.png ├── deconvolution_dask.png └── Model_Partition_Calibration_View.png ├── tests ├── __init__.py ├── data_models │ └── __init__.py ├── processing_library │ └── __init__.py └── processing_components │ └── __init__.py ├── util └── __init__.py ├── examples ├── __init__.py └── comparisons │ └── __init__.py ├── test_results └── __init__.py ├── charts └── arl-cluster │ ├── secrets │ └── .gitkeep │ ├── templates │ └── NOTES.txt │ └── .helmignore ├── setup.cfg ├── workflows ├── shared │ ├── __init__.py │ └── imaging │ │ └── __init__.py ├── arlexecute │ ├── image │ │ └── __init__.py │ ├── imaging │ │ └── __init__.py │ ├── simulation │ │ └── __init__.py │ ├── skymodel │ │ └── __init__.py │ ├── calibration │ │ └── __init__.py │ ├── pipelines │ │ └── __init__.py │ └── __init__.py ├── serial │ ├── imaging │ │ └── __init__.py │ ├── pipelines │ │ └── __init__.py │ ├── skymodel │ │ └── __init__.py │ ├── calibration │ │ └── __init__.py │ ├── simulation │ │ └── __init__.py │ └── __init__.py ├── scripts │ └── pipelines │ │ ├── dprepb │ │ └── run-mpi.sh │ │ └── performance │ │ └── pipelines-timings │ │ ├── machinefile │ │ └── csd3 │ │ └── submit_all.sh ├── __init__.py └── notebooks │ └── Makefile ├── wrappers ├── arlexecute │ ├── execution_support │ │ ├── __init__.py │ │ └── arlexecute.py │ ├── skymodel │ │ └── __init__.py │ ├── skycomponent │ │ ├── __init__.py │ │ └── base.py │ ├── griddata │ │ ├── __init__.py │ │ └── kernels.py │ ├── image │ │ ├── __init__.py │ │ ├── deconvolution.py │ │ └── iterators.py │ ├── simulation │ │ ├── __init__.py │ │ ├── noise.py │ │ ├── pointing.py │ │ ├── surface.py │ │ ├── configurations.py │ │ └── ionospheric_screen.py │ ├── imaging │ │ ├── __init__.py │ │ ├── wstack_single.py │ │ └── weighting.py │ ├── calibration │ │ ├── __init__.py │ │ ├── rcal.py │ │ ├── calibration.py │ │ ├── modelpartition.py │ │ └── iterators.py │ ├── visibility │ │ ├── visibility_fitting.py │ │ ├── vis_select.py │ │ └── __init__.py │ └── __init__.py └── serial │ ├── skymodel │ └── __init__.py │ ├── skycomponent │ ├── __init__.py │ └── base.py │ ├── griddata │ ├── __init__.py │ └── kernels.py │ ├── image │ ├── __init__.py │ ├── deconvolution.py │ └── iterators.py │ ├── simulation │ ├── __init__.py │ ├── noise.py │ ├── pointing.py │ ├── surface.py │ ├── configurations.py │ └── ionospheric_screen.py │ ├── imaging │ ├── __init__.py │ ├── wstack_single.py │ └── weighting.py │ ├── calibration │ ├── __init__.py │ ├── rcal.py │ ├── calibration.py │ ├── modelpartition.py │ └── iterators.py │ ├── visibility │ ├── visibility_fitting.py │ ├── vis_select.py │ └── __init__.py │ └── __init__.py ├── .gitattributes ├── processing_library ├── arrays │ └── __init__.py ├── calibration │ └── __init__.py ├── image │ └── __init__.py ├── imaging │ └── __init__.py ├── notebooks │ └── Makefile ├── util │ ├── __init__.py │ └── sizeof.py └── __init__.py ├── processing_components ├── skymodel │ └── __init__.py ├── skycomponent │ └── __init__.py ├── notebooks │ └── Makefile ├── griddata │ └── __init__.py ├── image │ └── __init__.py ├── imaging │ └── __init__.py ├── calibration │ └── __init__.py ├── simulation │ └── __init__.py └── visibility │ └── __init__.py ├── deprecated_code ├── wrappers │ └── mpi │ │ ├── skymodel │ │ └── __init__.py │ │ ├── skycomponent │ │ ├── __init__.py │ │ └── base.py │ │ ├── image │ │ ├── __init__.py │ │ └── deconvolution.py │ │ ├── griddata │ │ ├── __init__.py │ │ └── kernels.py │ │ ├── simulation │ │ ├── __init__.py │ │ └── ionospheric_screen.py │ │ ├── imaging │ │ ├── __init__.py │ │ ├── wstack_single.py │ │ └── weighting.py │ │ ├── calibration │ │ ├── __init__.py │ │ ├── rcal.py │ │ ├── calibration.py │ │ ├── modelpartition.py │ │ └── iterators.py │ │ └── visibility │ │ ├── visibility_fitting.py │ │ ├── vis_select.py │ │ └── __init__.py ├── workflows │ ├── mpi │ │ ├── imaging │ │ │ └── __init__.py │ │ ├── pipelines │ │ │ └── __init__.py │ │ ├── calibration │ │ │ └── __init__.py │ │ ├── __init__.py │ │ ├── machinefile │ │ ├── run-mpi.sh │ │ ├── results │ │ │ └── mpi │ │ │ │ └── foo │ │ ├── tests │ │ │ └── test-dask.py │ │ └── tracing │ │ │ └── mpi2prv.sh │ └── ffiwrapped │ │ └── timg_starpu │ │ └── env.sh └── ffiwrappers │ ├── src │ └── old │ │ └── ffi_routinestest.c │ ├── include │ └── wrappingcore.h │ └── Makefile.old ├── __init__.py ├── data_models └── __init__.py ├── tools └── inventory │ ├── group_vars │ └── all │ └── docker ├── docker └── notebook.sh ├── cluster_tests ├── Makefile ├── ritoy │ └── Makefile ├── dask_test │ └── Makefile ├── test_image │ └── Makefile └── ritoy-numba │ └── Makefile └── CONTRIBUTORS.md /data/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/ARL.graffle: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/Theory.pdf: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /util/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test_results/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/comparisons/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/data_models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /charts/arl-cluster/secrets/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /charts/arl-cluster/templates/NOTES.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/processing_library/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- 1 | [build_ext] 2 | inplace=1 3 | -------------------------------------------------------------------------------- /tests/processing_components/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /workflows/shared/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging'] -------------------------------------------------------------------------------- /wrappers/arlexecute/execution_support/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- 1 | /data/** filter=lfs diff=lfs merge=lfs -text 2 | -------------------------------------------------------------------------------- /processing_library/arrays/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['cleaners'] -------------------------------------------------------------------------------- /processing_library/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['solvers'] -------------------------------------------------------------------------------- /processing_library/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['operations'] -------------------------------------------------------------------------------- /wrappers/serial/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['operations'] -------------------------------------------------------------------------------- /processing_components/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['operations'] -------------------------------------------------------------------------------- /processing_library/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging_params'] -------------------------------------------------------------------------------- /workflows/arlexecute/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['image_arlexecute'] -------------------------------------------------------------------------------- /workflows/serial/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging_serial'] -------------------------------------------------------------------------------- /workflows/serial/pipelines/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['pipeline_serial'] -------------------------------------------------------------------------------- /workflows/serial/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['skymodel_serial'] -------------------------------------------------------------------------------- /workflows/shared/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging_shared'] -------------------------------------------------------------------------------- /wrappers/arlexecute/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['operations'] -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['operations'] -------------------------------------------------------------------------------- /workflows/arlexecute/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging_arlexecute'] -------------------------------------------------------------------------------- /workflows/serial/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['calibration_serial'] -------------------------------------------------------------------------------- /workflows/serial/simulation/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['simulation_serial'] -------------------------------------------------------------------------------- /wrappers/serial/skycomponent/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'operations'] -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['imaging_mpi'] -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/pipelines/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['pipeline_mpi'] -------------------------------------------------------------------------------- /processing_components/skycomponent/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'operations'] -------------------------------------------------------------------------------- /workflows/arlexecute/simulation/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['simulation_arlexecute'] -------------------------------------------------------------------------------- /workflows/arlexecute/skymodel/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['skymodel_arlexecute'] -------------------------------------------------------------------------------- /wrappers/arlexecute/skycomponent/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'operations'] -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['calibration_mpi'] -------------------------------------------------------------------------------- /workflows/arlexecute/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['calibration_arlexecute'] -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/skycomponent/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'operations'] -------------------------------------------------------------------------------- /processing_components/notebooks/Makefile: -------------------------------------------------------------------------------- 1 | NBs = rcal.ipynb 2 | include ../jupyter.mk 3 | -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['calibration', 'imaging', 'pipelines'] -------------------------------------------------------------------------------- /workflows/scripts/pipelines/dprepb/run-mpi.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | mpiexec -n $1 python $2 -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['data_models', 'processing_components', 'processing_library', 'workflows'] -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/machinefile: -------------------------------------------------------------------------------- 1 | localhost 2 | localhost 3 | localhost 4 | localhost 5 | -------------------------------------------------------------------------------- /workflows/serial/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['calibration', 'imaging', 'pipelines', 'simulation', 'skymodel'] -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/run-mpi.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | mpiexec -n $1 -f machinefile python $2 3 | -------------------------------------------------------------------------------- /workflows/arlexecute/pipelines/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['pipeline_arlexecute', 'pipeline_mpccal_arlexecute'] -------------------------------------------------------------------------------- /wrappers/serial/griddata/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['convolution_functions', 'gridding', 'kernels', 'operations'] -------------------------------------------------------------------------------- /wrappers/serial/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['deconvolution', 'gather_scatter', 'iterators', 'operations'] -------------------------------------------------------------------------------- /workflows/arlexecute/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | __all__ = ['calibration', 'imaging', 'pipelines', 'simulation', 'skymodel'] -------------------------------------------------------------------------------- /wrappers/arlexecute/griddata/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['convolution_functions', 'gridding', 'kernels', 'operations'] -------------------------------------------------------------------------------- /wrappers/arlexecute/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['deconvolution', 'gather_scatter', 'iterators', 'operations'] -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['deconvolution', 'gather_scatter', 'iterators', 'operations'] -------------------------------------------------------------------------------- /processing_components/griddata/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['convolution_functions', 'gridding', 'kernels', 'operations'] -------------------------------------------------------------------------------- /processing_library/notebooks/Makefile: -------------------------------------------------------------------------------- 1 | NBs = # gridding.ipynb PSWF_Calculation.ipynb 2 | include ../jupyter.mk 3 | 4 | -------------------------------------------------------------------------------- /processing_library/util/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['array_functions', 'compass_bearing', 'coordinate_support', 'sizeof'] -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/griddata/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['convolution_functions', 'gridding', 'kernels', 'operations'] -------------------------------------------------------------------------------- /wrappers/arlexecute/simulation/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['configurations', 'ionospheric_screen', 'pointing', 'testing_support'] -------------------------------------------------------------------------------- /wrappers/serial/simulation/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['configurations', 'ionospheric_screen', 'pointing', 'testing_support'] -------------------------------------------------------------------------------- /docs/dask_global.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SKA-ScienceDataProcessor/algorithm-reference-library/HEAD/docs/dask_global.png -------------------------------------------------------------------------------- /processing_components/image/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['deconvolution', 'gather_scatter', 'gradients', 'iterators', 'operations'] -------------------------------------------------------------------------------- /workflows/scripts/pipelines/performance/pipelines-timings/machinefile: -------------------------------------------------------------------------------- 1 | localhost 2 | localhost 3 | localhost 4 | localhost 5 | -------------------------------------------------------------------------------- /wrappers/serial/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'primary_beams', 'timeslice_single', 'weighting', 'wstack_single'] 2 | -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/results/mpi/foo: -------------------------------------------------------------------------------- 1 | This folder needs to exist for the scripts to run, as they put their output here. 2 | -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/simulation/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['configurations', 'ionospheric_screen', 'pointing', 'testing_support'] -------------------------------------------------------------------------------- /wrappers/arlexecute/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'primary_beams', 'timeslice_single', 'weighting', 'wstack_single'] 2 | -------------------------------------------------------------------------------- /data_models/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | __all__ =['buffer_data_models', 'data_model_helpers', 'memory_data_models', 'parameters', 'polarisation'] -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'primary_beams', 'timeslice_single', 'weighting', 'wstack_single'] 2 | -------------------------------------------------------------------------------- /docs/ARL_Module_View.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SKA-ScienceDataProcessor/algorithm-reference-library/HEAD/docs/ARL_Module_View.png -------------------------------------------------------------------------------- /docs/ARL_functional.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SKA-ScienceDataProcessor/algorithm-reference-library/HEAD/docs/ARL_functional.png -------------------------------------------------------------------------------- /docs/ARL_transitions.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SKA-ScienceDataProcessor/algorithm-reference-library/HEAD/docs/ARL_transitions.png -------------------------------------------------------------------------------- /processing_components/imaging/__init__.py: -------------------------------------------------------------------------------- 1 | __all__ = ['base', 'ng', 'primary_beams', 'timeslice_single', 'weighting', 'wstack_single'] 2 | -------------------------------------------------------------------------------- /workflows/__init__.py: -------------------------------------------------------------------------------- 1 | """ Algorithm Reference Library workflows 2 | 3 | """ 4 | __all__ = ['arlexecute', 'serial', 'scripts', 'shared'] -------------------------------------------------------------------------------- /docs/deconvolution_dask.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SKA-ScienceDataProcessor/algorithm-reference-library/HEAD/docs/deconvolution_dask.png -------------------------------------------------------------------------------- /wrappers/arlexecute/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | __all__ = ['calibration', 'calibration_control', 'iterators', 'operations', 'pointing', 'rcal'] -------------------------------------------------------------------------------- /wrappers/serial/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | __all__ = ['calibration', 'calibration_control', 'iterators', 'operations', 'pointing', 'rcal'] -------------------------------------------------------------------------------- /wrappers/serial/calibration/rcal.py: -------------------------------------------------------------------------------- 1 | """ Real time calibration pipeline 2 | 3 | """ 4 | from processing_components.calibration.rcal import rcal -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/tests/test-dask.py: -------------------------------------------------------------------------------- 1 | 2 | from dask.distributed import Client 3 | client = Client(scheduler_file='./scheduler.json') 4 | -------------------------------------------------------------------------------- /processing_components/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | __all__ = ['calibration', 'calibration_control', 'iterators', 'operations', 'pointing', 'rcal'] -------------------------------------------------------------------------------- /wrappers/arlexecute/calibration/rcal.py: -------------------------------------------------------------------------------- 1 | """ Real time calibration pipeline 2 | 3 | """ 4 | from processing_components.calibration.rcal import rcal -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/calibration/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | __all__ = ['calibration', 'calibration_control', 'iterators', 'operations', 'pointing', 'rcal'] -------------------------------------------------------------------------------- /tools/inventory/group_vars/all: -------------------------------------------------------------------------------- 1 | arl_image: 10.128.26.15:5000/arl_img 2 | arl_image_tag: latest 3 | dask_procs: 2 4 | dask_threads: 1 5 | dask_tmp: /arl/tmp -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/calibration/rcal.py: -------------------------------------------------------------------------------- 1 | """ Real time calibration pipeline 2 | 3 | """ 4 | from processing_components.calibration.rcal import rcal -------------------------------------------------------------------------------- /docker/notebook.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | source "${HOME}/.bash_profile" 4 | # source activate dask-distributed 5 | jupyter lab --allow-root "$@" 6 | -------------------------------------------------------------------------------- /data/models/M31.MOD: 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copy_skycomponent -------------------------------------------------------------------------------- /wrappers/serial/skycomponent/base.py: -------------------------------------------------------------------------------- 1 | """Function to manage skycomponents. 2 | 3 | """ 4 | 5 | from processing_components.skycomponent.base import copy_skycomponent -------------------------------------------------------------------------------- /data/configurations/A27CR3P6B.in: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid sha256:c773a2cf3c0ef6ca2e6af40d3fc5cad3f285826d4587ce21b7d373c9265cec72 3 | size 3319 4 | -------------------------------------------------------------------------------- /data/configurations/ASKAP10.csv: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid 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-------------------------------------------------------------------------------- /wrappers/serial/simulation/noise.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid testing in various ways. 3 | """ 4 | from processing_components.simulation.noise import addnoise_visibility -------------------------------------------------------------------------------- /data/configurations/A27CR3P6B.in.csv: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid sha256:b1280bb984a09b73f7165300ece5680fe6fccaaec7deba9be7b39ed8249c4694 3 | size 814 4 | -------------------------------------------------------------------------------- /data/configurations/A27CR3P6BXYZ.in: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid 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/wrappers/arlexecute/visibility/visibility_fitting.py: -------------------------------------------------------------------------------- 1 | """ Visibility operations 2 | 3 | """ 4 | 5 | from processing_components.visibility.visibility_fitting import fit_visibility -------------------------------------------------------------------------------- /wrappers/serial/visibility/visibility_fitting.py: -------------------------------------------------------------------------------- 1 | """ Visibility operations 2 | 3 | """ 4 | 5 | from processing_components.visibility.visibility_fitting import fit_visibility -------------------------------------------------------------------------------- /data/configurations/A27CR3P6BXYZ.in.csv: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid sha256:9b187c47934f52c26008d33ad07041425159bd72ee5dd2cbfbb21b845fe060fc 3 | size 2319 4 | 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-------------------------------------------------------------------------------- 1 | __all__ = ['configurations', 'ionospheric_screen', 'noise', 'pointing', 'rfi', 'simulation_helpers', 2 | 'surface', 'testing_support'] -------------------------------------------------------------------------------- /wrappers/arlexecute/calibration/calibration.py: -------------------------------------------------------------------------------- 1 | """ Functions to solve for antenna/station gain 2 | 3 | """ 4 | 5 | from processing_components.calibration.calibration import solve_gaintable -------------------------------------------------------------------------------- /data/configurations/LOW_SKA-TEL-SKO-0000422_Rev3.txt: -------------------------------------------------------------------------------- 1 | version https://git-lfs.github.com/spec/v1 2 | oid sha256:b9802fe508cd6b26c9de076a8312c40bc8a346a1fc6051a1a40c47dde1d3864b 3 | size 14259 4 | 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sha256:afe1145d37a9f10106ba1802c3e2d9898d7bf6801c5ab95b5e514951e46581f7 3 | size 4204800 4 | -------------------------------------------------------------------------------- /deprecated_code/workflows/mpi/tracing/mpi2prv.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | source /apps/BSCTOOLS/extrae/3.4.1/impi+libgomp4.9/etc/extrae.sh 4 | 5 | ${EXTRAE_HOME}/bin/mpi2prv -f TRACE.mpits -o mpi_ping.prv 6 | -------------------------------------------------------------------------------- /wrappers/serial/simulation/pointing.py: -------------------------------------------------------------------------------- 1 | """ Functions for ionospheric modelling: see SDP memo 97 2 | 3 | """ 4 | 5 | from processing_components.simulation.pointing import simulate_gaintable_from_pointingtable -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/visibility/vis_select.py: -------------------------------------------------------------------------------- 1 | """ Visibility selectors for a BlockVisibility or Visibility. 2 | 3 | 4 | """ 5 | from processing_components.visibility.vis_select import vis_select_uvrange -------------------------------------------------------------------------------- /wrappers/arlexecute/simulation/pointing.py: -------------------------------------------------------------------------------- 1 | """ Functions for ionospheric modelling: see SDP memo 97 2 | 3 | """ 4 | 5 | from processing_components.simulation.pointing import simulate_gaintable_from_pointingtable 6 | -------------------------------------------------------------------------------- /wrappers/arlexecute/simulation/surface.py: -------------------------------------------------------------------------------- 1 | """ Functions for ionospheric modelling: see SDP memo 97 2 | 3 | """ 4 | 5 | from processing_components.simulation.surface import simulate_gaintable_from_voltage_patterns 6 | -------------------------------------------------------------------------------- /wrappers/serial/calibration/modelpartition.py: -------------------------------------------------------------------------------- 1 | """ Radio interferometric calibration using an expectation maximisation algorithm 2 | 3 | See the SDP document "Model Partition Calibration View Packet" 4 | 5 | """ 6 | -------------------------------------------------------------------------------- /wrappers/serial/simulation/surface.py: -------------------------------------------------------------------------------- 1 | """ Functions for ionospheric modelling: see SDP memo 97 2 | 3 | """ 4 | 5 | from processing_components.simulation.surface import simulate_gaintable_from_voltage_patterns 6 | -------------------------------------------------------------------------------- /wrappers/serial/visibility/vis_select.py: -------------------------------------------------------------------------------- 1 | """ Visibility selectors for a BlockVisibility or Visibility. 2 | 3 | 4 | """ 5 | from processing_components.visibility.vis_select import vis_select_uvrange, vis_select_wrange -------------------------------------------------------------------------------- /workflows/notebooks/Makefile: -------------------------------------------------------------------------------- 1 | 2 | NBs = simple-dask_arlexecute.ipynb imaging_serial.ipynb imaging-fits_arlexecute.ipynb \ 3 | imaging-wterm_arlexecute.ipynb imaging-pipelines_arlexecute.ipynb 4 | include ../jupyter.mk 5 | -------------------------------------------------------------------------------- /wrappers/arlexecute/calibration/modelpartition.py: -------------------------------------------------------------------------------- 1 | """ Radio interferometric calibration using an expectation maximisation algorithm 2 | 3 | See the SDP document "Model Partition Calibration View Packet" 4 | 5 | """ 6 | -------------------------------------------------------------------------------- /wrappers/arlexecute/visibility/vis_select.py: -------------------------------------------------------------------------------- 1 | """ Visibility selectors for a BlockVisibility or Visibility. 2 | 3 | 4 | """ 5 | from processing_components.visibility.vis_select import vis_select_uvrange, vis_select_wrange -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/calibration/modelpartition.py: -------------------------------------------------------------------------------- 1 | """ Radio interferometric calibration using an expectation maximisation algorithm 2 | 3 | See the SDP document "Model Partition Calibration View Packet" 4 | 5 | """ 6 | -------------------------------------------------------------------------------- /wrappers/arlexecute/image/deconvolution.py: -------------------------------------------------------------------------------- 1 | """ Image deconvolution functions 2 | 3 | """ 4 | 5 | from processing_components.image.deconvolution import deconvolve_cube 6 | from processing_components.image.deconvolution import restore_cube -------------------------------------------------------------------------------- /wrappers/serial/image/deconvolution.py: -------------------------------------------------------------------------------- 1 | """ Image deconvolution functions 2 | 3 | """ 4 | 5 | from processing_components.image.deconvolution import deconvolve_cube 6 | from processing_components.image.deconvolution import restore_cube -------------------------------------------------------------------------------- /wrappers/serial/imaging/wstack_single.py: -------------------------------------------------------------------------------- 1 | """ 2 | W-stacking processing""" 3 | 4 | from processing_components.imaging.wstack_single import predict_wstack_single 5 | from processing_components.imaging.wstack_single import invert_wstack_single -------------------------------------------------------------------------------- /deprecated_code/ffiwrappers/src/old/ffi_routinestest.c: -------------------------------------------------------------------------------- 1 | #include 2 | 3 | 4 | static (*print_hello_from_python)(char *name); 5 | 6 | int main(){ 7 | 8 | print_hello_from_python("Montse"); 9 | return 0; 10 | 11 | } 12 | -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/image/deconvolution.py: -------------------------------------------------------------------------------- 1 | """ Image deconvolution functions 2 | 3 | """ 4 | 5 | from processing_components.image.deconvolution import deconvolve_cube 6 | from processing_components.image.deconvolution import restore_cube -------------------------------------------------------------------------------- /wrappers/arlexecute/imaging/wstack_single.py: -------------------------------------------------------------------------------- 1 | """ 2 | W-stacking processing""" 3 | 4 | from processing_components.imaging.wstack_single import predict_wstack_single 5 | from processing_components.imaging.wstack_single import invert_wstack_single -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/imaging/wstack_single.py: -------------------------------------------------------------------------------- 1 | """ 2 | W-stacking processing""" 3 | 4 | from processing_components.imaging.wstack_single import predict_wstack_single 5 | from processing_components.imaging.wstack_single import invert_wstack_single -------------------------------------------------------------------------------- /processing_library/util/sizeof.py: -------------------------------------------------------------------------------- 1 | """ From https://goshippo.com/blog/measure-real-size-any-python-object/ 2 | 3 | """ 4 | 5 | import sys 6 | 7 | from distributed.protocol import pickle 8 | 9 | def get_size(obj): 10 | return len(pickle.dumps(obj)) 11 | -------------------------------------------------------------------------------- /wrappers/arlexecute/griddata/kernels.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that define and manipulate kernels 3 | 4 | """ 5 | from processing_components.griddata.kernels import create_pswf_convolutionfunction, \ 6 | create_awterm_convolutionfunction, create_box_convolutionfunction -------------------------------------------------------------------------------- /wrappers/serial/griddata/kernels.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that define and manipulate kernels 3 | 4 | """ 5 | from processing_components.griddata.kernels import create_pswf_convolutionfunction, \ 6 | create_awterm_convolutionfunction, create_box_convolutionfunction -------------------------------------------------------------------------------- /cluster_tests/Makefile: -------------------------------------------------------------------------------- 1 | 2 | .PHONY: clean 3 | clean: 4 | make -C dask_test clean 5 | make -C test_image clean 6 | make -C ritoy clean 7 | 8 | .PHONY: test 9 | clean: 10 | make -C dask_test test 11 | make -C test_image test 12 | make -C ritoy test 13 | 14 | -------------------------------------------------------------------------------- /cluster_tests/ritoy/Makefile: -------------------------------------------------------------------------------- 1 | 2 | PYFILE = cluster_test_ritoy.py 3 | 4 | .PHONY: clean 5 | clean: 6 | \rm -rf *.log slurm*.out dask-worker-space hostfile.* 7 | 8 | .PHONY: test 9 | test: ${PYFILE} 10 | python ${PYFILE} 11 | 12 | 13 | 14 | 15 | 16 | -------------------------------------------------------------------------------- /deprecated_code/ffiwrappers/include/wrappingcore.h: -------------------------------------------------------------------------------- 1 | 2 | size_t bk_getfn(const char* fname); 3 | 4 | // Not a prototype, so warning will be generated. TODO: switch off 5 | // warning for this instance only? 6 | #define BKFNPY(F) (* ( void (*)() )(bk_getfn( #F ))) 7 | -------------------------------------------------------------------------------- /wrappers/serial/visibility/__init__.py: -------------------------------------------------------------------------------- 1 | """ Functions for processing visibility. These operate on one or both of BlockVisibility and Visibility. 2 | 3 | """ 4 | __all__ = ['base', 'coalesce', 'gather_scatter', 'iterators', 'operations', 'vis_select', 'visibility_fitting'] -------------------------------------------------------------------------------- /charts/arl-cluster/.helmignore: -------------------------------------------------------------------------------- 1 | # Patterns to ignore when building packages. 2 | # This supports shell glob matching, relative path matching, and 3 | # negation (prefixed with !). Only one pattern per line. 4 | # Common VCS dirs 5 | # Common backup files 6 | # Various IDEs 7 | -------------------------------------------------------------------------------- /cluster_tests/dask_test/Makefile: -------------------------------------------------------------------------------- 1 | 2 | PYFILE = cluster_dask_test.py 3 | 4 | .PHONY: clean 5 | clean: 6 | \rm -rf *.log slurm*.out dask-worker-space hostfile.* 7 | 8 | .PHONY: test 9 | test: ${PYFILE} 10 | python ${PYFILE} 11 | 12 | 13 | 14 | 15 | 16 | -------------------------------------------------------------------------------- /cluster_tests/test_image/Makefile: -------------------------------------------------------------------------------- 1 | 2 | PYFILE = cluster_test_image.py 3 | 4 | .PHONY: clean 5 | clean: 6 | \rm -rf *.log slurm*.out dask-worker-space hostfile.* 7 | 8 | .PHONY: test 9 | test: ${PYFILE} 10 | python ${PYFILE} 11 | 12 | 13 | 14 | 15 | 16 | -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/griddata/kernels.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that define and manipulate kernels 3 | 4 | """ 5 | from processing_components.griddata.kernels import create_pswf_convolutionfunction, \ 6 | create_awterm_convolutionfunction, create_box_convolutionfunction -------------------------------------------------------------------------------- /processing_library/__init__.py: -------------------------------------------------------------------------------- 1 | """ Algorithm Reference Library functions. These are functions that will not be invoked directly from the Execution 2 | Framework. 3 | 4 | """ 5 | __all__ = ['arrays', 'calibration', 'fourier_transforms', 'image', 'imaging', 'non_imaging', 'util'] -------------------------------------------------------------------------------- /wrappers/arlexecute/visibility/__init__.py: -------------------------------------------------------------------------------- 1 | """ Functions for processing visibility. These operate on one or both of BlockVisibility and Visibility. 2 | 3 | """ 4 | __all__ = ['base', 'coalesce', 'gather_scatter', 'iterators', 'operations', 'vis_select', 'visibility_fitting'] -------------------------------------------------------------------------------- /wrappers/serial/calibration/iterators.py: -------------------------------------------------------------------------------- 1 | """ GainTable iterators for iterating through a GainTable 2 | 3 | """ 4 | 5 | from processing_components.calibration.iterators import gaintable_null_iter 6 | from processing_components.calibration.iterators import gaintable_timeslice_iter -------------------------------------------------------------------------------- /cluster_tests/ritoy-numba/Makefile: -------------------------------------------------------------------------------- 1 | 2 | PYFILE = cluster_test_ritoy_numba.py 3 | 4 | .PHONY: clean 5 | clean: 6 | \rm -rf *.log slurm*.out dask-worker-space hostfile.* 7 | 8 | .PHONY: test 9 | test: ${PYFILE} 10 | python ${PYFILE} 11 | 12 | 13 | 14 | 15 | 16 | -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/visibility/__init__.py: -------------------------------------------------------------------------------- 1 | """ Functions for processing visibility. These operate on one or both of BlockVisibility and Visibility. 2 | 3 | """ 4 | __all__ = ['base', 'coalesce', 'gather_scatter', 'iterators', 'operations', 'vis_select', 'visibility_fitting'] -------------------------------------------------------------------------------- /processing_components/visibility/__init__.py: -------------------------------------------------------------------------------- 1 | """ Functions for processing visibility. These operate on one or both of BlockVisibility and Visibility. 2 | 3 | """ 4 | __all__ = ['base', 'coalesce', 'gather_scatter', 'iterators', 'msv2', 'operations', 'vis_select', 'visibility_fitting'] -------------------------------------------------------------------------------- /wrappers/arlexecute/calibration/iterators.py: -------------------------------------------------------------------------------- 1 | """ GainTable iterators for iterating through a GainTable 2 | 3 | """ 4 | 5 | from processing_components.calibration.iterators import gaintable_null_iter 6 | from processing_components.calibration.iterators import gaintable_timeslice_iter -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/calibration/iterators.py: -------------------------------------------------------------------------------- 1 | """ GainTable iterators for iterating through a GainTable 2 | 3 | """ 4 | 5 | from processing_components.calibration.iterators import gaintable_null_iter 6 | from processing_components.calibration.iterators import gaintable_timeslice_iter -------------------------------------------------------------------------------- /CONTRIBUTORS.md: -------------------------------------------------------------------------------- 1 | ARL contributors 2 | ================ 3 | 4 | * **[Tim Cornwell](http://github.com/timcornwell)** 5 | 6 | * **[Bojan Nikolic](http://github.com/bnikolic)** 7 | 8 | * **[Peter Wortmann](http://github.com/scpmw)** 9 | 10 | * **[Montse Farreras](http://github.com/mfarrera)** 11 | -------------------------------------------------------------------------------- /wrappers/arlexecute/execution_support/arlexecute.py: -------------------------------------------------------------------------------- 1 | """ Execute wrap dask such that with the same code Dask.delayed can be replaced by immediate calculation 2 | 3 | """ 4 | 5 | from wrappers.arlexecute.execution_support.arlexecutebase import ARLExecuteBase 6 | arlexecute = ARLExecuteBase(use_dask=True) -------------------------------------------------------------------------------- /wrappers/serial/simulation/configurations.py: -------------------------------------------------------------------------------- 1 | from processing_components.simulation.configurations import create_configuration_from_file, create_LOFAR_configuration, \ 2 | create_named_configuration, create_named_configuration, create_configuration_from_SKAfile, \ 3 | create_configuration_from_MIDfile 4 | -------------------------------------------------------------------------------- /wrappers/arlexecute/simulation/configurations.py: -------------------------------------------------------------------------------- 1 | from processing_components.simulation.configurations import create_configuration_from_file, create_LOFAR_configuration, \ 2 | create_named_configuration, create_named_configuration, create_configuration_from_SKAfile, \ 3 | create_configuration_from_MIDfile 4 | -------------------------------------------------------------------------------- /wrappers/serial/simulation/ionospheric_screen.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid testing in various ways. 3 | """ 4 | 5 | from processing_components.simulation.ionospheric_screen import find_pierce_points, create_gaintable_from_screen, \ 6 | calculate_sf_from_screen, plot_gaintable_on_screen, grid_gaintable_to_screen 7 | -------------------------------------------------------------------------------- /deprecated_code/ffiwrappers/Makefile.old: -------------------------------------------------------------------------------- 1 | CC=gcc 2 | LDFLAGS=$(shell python3-config --ldflags) -lcfitsio 3 | EXT_SUFFIX=$(shell python3-config --extension-suffix) 4 | 5 | all: libarlffi 6 | 7 | libarlffi: 8 | cp $(BUILD_LIB)/libarlffi$(EXT_SUFFIX) libarlffi.so 9 | 10 | clean: 11 | rm -rf build libarlffi.so 12 | -------------------------------------------------------------------------------- /wrappers/arlexecute/simulation/ionospheric_screen.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid testing in various ways. 3 | """ 4 | 5 | from processing_components.simulation.ionospheric_screen import find_pierce_points, create_gaintable_from_screen, \ 6 | calculate_sf_from_screen, plot_gaintable_on_screen, grid_gaintable_to_screen 7 | -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/simulation/ionospheric_screen.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid testing in various ways. 3 | """ 4 | 5 | from processing_components.simulation.ionospheric_screen import find_pierce_points, create_gaintable_from_screen, \ 6 | calculate_sf_from_screen, plot_gaintable_on_screen, grid_gaintable_to_screen 7 | -------------------------------------------------------------------------------- /tools/inventory/docker: -------------------------------------------------------------------------------- 1 | [master] 2 | master1 ansible_host=10.101.1.23 ansible_user=ubuntu 3 | 4 | [workers] 5 | worker1 ansible_host=10.101.1.24 ansible_user=ubuntu 6 | worker2 ansible_host=10.101.1.25 ansible_user=ubuntu 7 | 8 | [docker-nodes:children] 9 | master 10 | workers 11 | 12 | [scheduler:children] 13 | master 14 | -------------------------------------------------------------------------------- /wrappers/serial/imaging/weighting.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid weighting the visibility data prior to imaging. 3 | """ 4 | 5 | from processing_components.imaging.weighting import weight_visibility 6 | from processing_components.imaging.weighting import taper_visibility_gaussian 7 | from processing_components.imaging.weighting import taper_visibility_tukey -------------------------------------------------------------------------------- /wrappers/arlexecute/imaging/weighting.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid weighting the visibility data prior to imaging. 3 | """ 4 | 5 | from processing_components.imaging.weighting import weight_visibility 6 | from processing_components.imaging.weighting import taper_visibility_gaussian 7 | from processing_components.imaging.weighting import taper_visibility_tukey -------------------------------------------------------------------------------- /wrappers/serial/image/iterators.py: -------------------------------------------------------------------------------- 1 | # 2 | """ 3 | Functions that define and manipulate images. Images are just data and a World Coordinate System. 4 | """ 5 | from processing_components.image.iterators import image_null_iter 6 | from processing_components.image.iterators import image_raster_iter 7 | from processing_components.image.iterators import image_channel_iter -------------------------------------------------------------------------------- /deprecated_code/wrappers/mpi/imaging/weighting.py: -------------------------------------------------------------------------------- 1 | """ 2 | Functions that aid weighting the visibility data prior to imaging. 3 | """ 4 | 5 | from processing_components.imaging.weighting import weight_visibility 6 | from processing_components.imaging.weighting import taper_visibility_gaussian 7 | from processing_components.imaging.weighting import taper_visibility_tukey -------------------------------------------------------------------------------- /wrappers/arlexecute/image/iterators.py: -------------------------------------------------------------------------------- 1 | # 2 | """ 3 | Functions that define and manipulate images. Images are just data and a World Coordinate System. 4 | """ 5 | from processing_components.image.iterators import image_null_iter 6 | from processing_components.image.iterators import image_raster_iter 7 | from processing_components.image.iterators import image_channel_iter -------------------------------------------------------------------------------- /wrappers/serial/__init__.py: -------------------------------------------------------------------------------- 1 | """ Algorithm Reference Library processing components. These are the processing components exposed to the Execution 2 | Framework 3 | 4 | """ 5 | __all__ = [ 6 | 'calibration', 7 | 'griddata', 8 | 'image', 9 | 'imaging', 10 | 'simulation', 11 | 'skycomponent', 12 | 'skymodel', 13 | 'visibility'] 14 | -------------------------------------------------------------------------------- /wrappers/arlexecute/__init__.py: -------------------------------------------------------------------------------- 1 | """ Algorithm Reference Library processing components. These are the processing components exposed to the Execution 2 | Framework 3 | 4 | """ 5 | __all__ = [ 6 | 'calibration', 7 | 'griddata', 8 | 'image', 9 | 'imaging', 10 | 'simulation', 11 | 'skycomponent', 12 | 'skymodel', 13 | 'visibility'] 14 | --------------------------------------------------------------------------------