├── .gitignore ├── .gitmodules ├── CHANGELOG ├── Doxyfile ├── LICENSE ├── README.md ├── SConstruct ├── cvodes ├── SConscript ├── cvodes_dydt.c ├── cvodes_dydt.h ├── cvodes_init.c ├── cvodes_jac.c ├── cvodes_jac.h └── solver_cvodes.c ├── data_bin_writer.py ├── div_tester.py ├── doc_push.sh ├── examples ├── main.dox ├── pyJac │ ├── h2.cti │ ├── h2ign.png │ ├── plotter.py │ └── pyJac.dox ├── scons_options.dox ├── styles.css └── van_der_pol │ ├── dydt.c │ ├── dydt.cu │ ├── dydt.cuh │ ├── dydt.h │ ├── generate_ics.py │ ├── gpu_macros.cuh │ ├── gpu_memory.cu │ ├── gpu_memory.cuh │ ├── header.cuh │ ├── header.h │ ├── ics.c │ ├── ics.cu │ ├── jacob.c │ ├── jacob.cu │ ├── jacob.cuh │ ├── jacob.h │ ├── launch_bounds.cuh │ ├── plotter.py │ ├── sparse_multiplier.c │ ├── sparse_multiplier.cu │ ├── sparse_multiplier.cuh │ ├── sparse_multiplier.h │ ├── van_der_pol.dox │ └── van_der_pol.png ├── exponential_integrators ├── SConscript ├── arnoldi.cuh ├── arnoldi.h ├── cf.c ├── cf.h ├── exp4 │ ├── SConscript │ ├── exp4.c │ ├── exp4.cu │ ├── exp4_init.c │ ├── exp4_init.cu │ ├── exp4_props.c │ ├── exp4_props.cu │ ├── exp4_props.cuh │ └── exp4_props.h ├── exponential_linear_algebra.cu ├── exponential_linear_algebra.cuh ├── exponential_linear_algebra.h ├── exprb43 │ ├── SConscript │ ├── exprb43.c │ ├── exprb43.cu │ ├── exprb43_init.c │ ├── exprb43_init.cu │ ├── exprb43_props.c │ ├── exprb43_props.cu │ ├── exprb43_props.cuh │ └── exprb43_props.h ├── linear-algebra.c ├── linear-algebra.h ├── phiAHessenberg.c ├── phiAHessenberg.cu ├── phiAHessenberg.cuh ├── phiAHessenberg.h ├── rational_approximant.c ├── rational_approximant.cu ├── rational_approximant.cuh └── rational_approximant.h ├── generic ├── SConscript ├── complexInverse.c ├── complexInverse.cu ├── complexInverse.cuh ├── complexInverse.h ├── fd_jacob.c ├── fd_jacob.cu ├── fd_jacob.cuh ├── inverse.cu ├── inverse.cuh ├── lapack_dfns.h ├── read_initial_conditions.c ├── read_initial_conditions.cu ├── read_initial_conditions.cuh ├── read_initial_conditions.h ├── solver.cuh ├── solver.h ├── solver_generic.c ├── solver_generic.cu ├── solver_init.cuh ├── solver_init.h ├── solver_interface.c ├── solver_interface.cu ├── solver_interface.cuh ├── solver_interface.h ├── solver_main.c ├── solver_main.cu ├── solver_props.cuh ├── solver_props.h └── timer.h ├── logger.py ├── mechanism ├── SConscript ├── jacobs │ └── SConscript └── rates │ └── SConscript ├── parameter_study.py ├── radau2a ├── SConscript ├── radau2a.c ├── radau2a.cu ├── radau2a_init.c ├── radau2a_init.cu ├── radau2a_props.c ├── radau2a_props.cu ├── radau2a_props.cuh └── radau2a_props.h ├── rk78 ├── SConscript ├── rk78_init.cpp ├── rk78_typedefs.hpp └── solver_rk78.cpp ├── rkc ├── SConscript ├── rkc.c ├── rkc.cu ├── rkc.cuh ├── rkc.h ├── rkc_init.c ├── rkc_init.cu ├── rkc_props.c ├── rkc_props.cu ├── rkc_props.cuh └── rkc_props.h ├── runner.py ├── site_scons ├── buildutils.py └── site_tools │ └── cuda.py └── tests ├── rateOutputTest.c ├── rateOutputTest.cu └── 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