├── LICENSE ├── README.md ├── architecture_gcascade.jpg ├── architecture_gcascade.png ├── figures ├── lib ├── decoders.py ├── gcn_lib │ ├── __init__.py │ ├── pos_embed.py │ ├── torch_edge.py │ ├── torch_nn.py │ └── torch_vertex.py ├── maxxvit_4out.py ├── models_timm │ ├── __init__.py │ ├── beit.py │ ├── byoanet.py │ ├── byobnet.py │ ├── cait.py │ ├── coat.py │ ├── convit.py │ ├── convmixer.py │ ├── convnext.py │ ├── crossvit.py │ ├── cspnet.py │ ├── deit.py │ ├── densenet.py │ ├── dla.py │ ├── dpn.py │ ├── edgenext.py │ ├── efficientformer.py │ ├── efficientnet.py │ ├── efficientnet_blocks.py │ ├── efficientnet_builder.py │ ├── factory.py │ ├── features.py │ ├── fx_features.py │ ├── gcvit.py │ ├── ghostnet.py │ ├── gluon_resnet.py │ ├── gluon_xception.py │ ├── hardcorenas.py │ ├── helpers.py │ ├── hrnet.py │ ├── hub.py │ ├── inception_resnet_v2.py │ ├── inception_v3.py │ ├── inception_v4.py │ ├── layers │ │ ├── __init__.py │ │ ├── activations.py │ │ ├── activations_jit.py │ │ ├── activations_me.py │ │ ├── adaptive_avgmax_pool.py │ │ ├── attention_pool2d.py │ │ ├── blur_pool.py │ │ ├── bottleneck_attn.py │ │ ├── cbam.py │ │ ├── classifier.py │ │ ├── cond_conv2d.py │ │ ├── config.py │ │ ├── conv2d_same.py │ │ ├── conv_bn_act.py │ │ ├── create_act.py │ │ ├── create_attn.py │ │ ├── create_conv2d.py │ │ ├── create_norm.py │ │ ├── create_norm_act.py │ │ ├── drop.py │ │ ├── eca.py │ │ ├── evo_norm.py │ │ ├── fast_norm.py │ │ ├── filter_response_norm.py │ │ ├── gather_excite.py │ │ ├── global_context.py │ │ ├── halo_attn.py │ │ ├── helpers.py │ │ ├── inplace_abn.py │ │ ├── lambda_layer.py │ │ ├── linear.py │ │ ├── median_pool.py │ │ ├── mixed_conv2d.py │ │ ├── ml_decoder.py │ │ ├── mlp.py │ │ ├── non_local_attn.py │ │ ├── norm.py │ │ ├── norm_act.py │ │ ├── padding.py │ │ ├── patch_embed.py │ │ ├── pool2d_same.py │ │ ├── pos_embed.py │ │ ├── selective_kernel.py │ │ ├── separable_conv.py │ │ ├── space_to_depth.py │ │ ├── split_attn.py │ │ ├── split_batchnorm.py │ │ ├── squeeze_excite.py │ │ ├── std_conv.py │ │ ├── test_time_pool.py │ │ ├── trace_utils.py │ │ └── weight_init.py │ ├── levit.py │ ├── maxxvit.py │ ├── mlp_mixer.py │ ├── mobilenetv3.py │ ├── mobilevit.py │ ├── mvitv2.py │ ├── nasnet.py │ ├── nest.py │ ├── nfnet.py │ ├── pit.py │ ├── pnasnet.py │ ├── poolformer.py │ ├── pruned │ │ ├── ecaresnet101d_pruned.txt │ │ ├── ecaresnet50d_pruned.txt │ │ ├── efficientnet_b1_pruned.txt │ │ ├── efficientnet_b2_pruned.txt │ │ └── efficientnet_b3_pruned.txt │ ├── pvt_v2.py │ ├── registry.py │ ├── regnet.py │ ├── res2net.py │ ├── resnest.py │ ├── resnet.py │ ├── resnetv2.py │ ├── rexnet.py │ ├── selecsls.py │ ├── senet.py │ ├── sequencer.py │ ├── sknet.py │ ├── swin_transformer.py │ ├── swin_transformer_v2.py │ ├── swin_transformer_v2_cr.py │ ├── tnt.py │ ├── tresnet.py │ ├── twins.py │ ├── vgg.py │ ├── visformer.py │ ├── vision_transformer.py │ ├── vision_transformer_hybrid.py │ ├── vision_transformer_relpos.py │ ├── volo.py │ ├── vovnet.py │ ├── xception.py │ ├── xception_aligned.py │ └── xcit.py ├── networks.py ├── pvtv2.py └── pyramid_vig.py ├── lists └── lists_Synapse │ ├── all.lst │ ├── test_vol.txt │ └── train.txt ├── qualitative_results_synapse.png ├── requirements.txt ├── test_ACDC.py ├── test_ISIC2018.py ├── test_polyp.py ├── test_synapse.py ├── train_ACDC.py ├── train_ISIC2018.py ├── train_polyp.py ├── train_synapse.py ├── trainer.py └── utils ├── README.md ├── dataloader.py ├── dataset_ACDC.py ├── dataset_synapse.py ├── format_conversion.py ├── joint_transforms.py ├── lesion ├── helpers.py ├── lesion_dataset.py └── make_dataset.py ├── misc.py ├── preprocess_synapse_data.py ├── preprocess_synapse_data_3d.py ├── transforms.py └── utils.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/README.md -------------------------------------------------------------------------------- /architecture_gcascade.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/architecture_gcascade.jpg -------------------------------------------------------------------------------- /architecture_gcascade.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/architecture_gcascade.png -------------------------------------------------------------------------------- /figures: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /lib/decoders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/decoders.py -------------------------------------------------------------------------------- /lib/gcn_lib/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/gcn_lib/__init__.py -------------------------------------------------------------------------------- /lib/gcn_lib/pos_embed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/gcn_lib/pos_embed.py -------------------------------------------------------------------------------- /lib/gcn_lib/torch_edge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/gcn_lib/torch_edge.py -------------------------------------------------------------------------------- /lib/gcn_lib/torch_nn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/gcn_lib/torch_nn.py -------------------------------------------------------------------------------- /lib/gcn_lib/torch_vertex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/gcn_lib/torch_vertex.py -------------------------------------------------------------------------------- /lib/maxxvit_4out.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/maxxvit_4out.py -------------------------------------------------------------------------------- /lib/models_timm/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/__init__.py -------------------------------------------------------------------------------- /lib/models_timm/beit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/beit.py -------------------------------------------------------------------------------- /lib/models_timm/byoanet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/byoanet.py -------------------------------------------------------------------------------- /lib/models_timm/byobnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/byobnet.py -------------------------------------------------------------------------------- /lib/models_timm/cait.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/cait.py -------------------------------------------------------------------------------- /lib/models_timm/coat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/coat.py -------------------------------------------------------------------------------- /lib/models_timm/convit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/convit.py -------------------------------------------------------------------------------- /lib/models_timm/convmixer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/convmixer.py -------------------------------------------------------------------------------- /lib/models_timm/convnext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/convnext.py -------------------------------------------------------------------------------- /lib/models_timm/crossvit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/crossvit.py -------------------------------------------------------------------------------- /lib/models_timm/cspnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/cspnet.py -------------------------------------------------------------------------------- /lib/models_timm/deit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/deit.py -------------------------------------------------------------------------------- /lib/models_timm/densenet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/densenet.py -------------------------------------------------------------------------------- /lib/models_timm/dla.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/dla.py -------------------------------------------------------------------------------- /lib/models_timm/dpn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/dpn.py -------------------------------------------------------------------------------- /lib/models_timm/edgenext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/edgenext.py -------------------------------------------------------------------------------- /lib/models_timm/efficientformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/efficientformer.py -------------------------------------------------------------------------------- /lib/models_timm/efficientnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/efficientnet.py -------------------------------------------------------------------------------- /lib/models_timm/efficientnet_blocks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/efficientnet_blocks.py -------------------------------------------------------------------------------- /lib/models_timm/efficientnet_builder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/efficientnet_builder.py -------------------------------------------------------------------------------- /lib/models_timm/factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/factory.py -------------------------------------------------------------------------------- /lib/models_timm/features.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/features.py -------------------------------------------------------------------------------- /lib/models_timm/fx_features.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/fx_features.py -------------------------------------------------------------------------------- /lib/models_timm/gcvit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/gcvit.py -------------------------------------------------------------------------------- /lib/models_timm/ghostnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/ghostnet.py -------------------------------------------------------------------------------- /lib/models_timm/gluon_resnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/gluon_resnet.py -------------------------------------------------------------------------------- /lib/models_timm/gluon_xception.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/gluon_xception.py -------------------------------------------------------------------------------- /lib/models_timm/hardcorenas.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/hardcorenas.py -------------------------------------------------------------------------------- /lib/models_timm/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/helpers.py -------------------------------------------------------------------------------- /lib/models_timm/hrnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/hrnet.py -------------------------------------------------------------------------------- /lib/models_timm/hub.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/hub.py -------------------------------------------------------------------------------- /lib/models_timm/inception_resnet_v2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/inception_resnet_v2.py -------------------------------------------------------------------------------- /lib/models_timm/inception_v3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/inception_v3.py -------------------------------------------------------------------------------- /lib/models_timm/inception_v4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/inception_v4.py -------------------------------------------------------------------------------- /lib/models_timm/layers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/__init__.py -------------------------------------------------------------------------------- /lib/models_timm/layers/activations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/activations.py -------------------------------------------------------------------------------- /lib/models_timm/layers/activations_jit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/activations_jit.py -------------------------------------------------------------------------------- /lib/models_timm/layers/activations_me.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/activations_me.py -------------------------------------------------------------------------------- /lib/models_timm/layers/adaptive_avgmax_pool.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/adaptive_avgmax_pool.py -------------------------------------------------------------------------------- /lib/models_timm/layers/attention_pool2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/attention_pool2d.py -------------------------------------------------------------------------------- /lib/models_timm/layers/blur_pool.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/blur_pool.py -------------------------------------------------------------------------------- /lib/models_timm/layers/bottleneck_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/bottleneck_attn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/cbam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/cbam.py -------------------------------------------------------------------------------- /lib/models_timm/layers/classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/classifier.py -------------------------------------------------------------------------------- /lib/models_timm/layers/cond_conv2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/cond_conv2d.py -------------------------------------------------------------------------------- /lib/models_timm/layers/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/config.py -------------------------------------------------------------------------------- /lib/models_timm/layers/conv2d_same.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/conv2d_same.py -------------------------------------------------------------------------------- /lib/models_timm/layers/conv_bn_act.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/conv_bn_act.py -------------------------------------------------------------------------------- /lib/models_timm/layers/create_act.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/create_act.py -------------------------------------------------------------------------------- /lib/models_timm/layers/create_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/create_attn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/create_conv2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/create_conv2d.py -------------------------------------------------------------------------------- /lib/models_timm/layers/create_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/create_norm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/create_norm_act.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/create_norm_act.py -------------------------------------------------------------------------------- /lib/models_timm/layers/drop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/drop.py -------------------------------------------------------------------------------- /lib/models_timm/layers/eca.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/eca.py -------------------------------------------------------------------------------- /lib/models_timm/layers/evo_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/evo_norm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/fast_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/fast_norm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/filter_response_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/filter_response_norm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/gather_excite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/gather_excite.py -------------------------------------------------------------------------------- /lib/models_timm/layers/global_context.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/global_context.py -------------------------------------------------------------------------------- /lib/models_timm/layers/halo_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/halo_attn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/helpers.py -------------------------------------------------------------------------------- /lib/models_timm/layers/inplace_abn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/inplace_abn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/lambda_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/lambda_layer.py -------------------------------------------------------------------------------- /lib/models_timm/layers/linear.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/linear.py -------------------------------------------------------------------------------- /lib/models_timm/layers/median_pool.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/median_pool.py -------------------------------------------------------------------------------- /lib/models_timm/layers/mixed_conv2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/mixed_conv2d.py -------------------------------------------------------------------------------- /lib/models_timm/layers/ml_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/ml_decoder.py -------------------------------------------------------------------------------- /lib/models_timm/layers/mlp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/mlp.py -------------------------------------------------------------------------------- /lib/models_timm/layers/non_local_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/non_local_attn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/norm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/norm_act.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/norm_act.py -------------------------------------------------------------------------------- /lib/models_timm/layers/padding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/padding.py -------------------------------------------------------------------------------- /lib/models_timm/layers/patch_embed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/patch_embed.py -------------------------------------------------------------------------------- /lib/models_timm/layers/pool2d_same.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/pool2d_same.py -------------------------------------------------------------------------------- /lib/models_timm/layers/pos_embed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/pos_embed.py -------------------------------------------------------------------------------- /lib/models_timm/layers/selective_kernel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/selective_kernel.py -------------------------------------------------------------------------------- /lib/models_timm/layers/separable_conv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/separable_conv.py -------------------------------------------------------------------------------- /lib/models_timm/layers/space_to_depth.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/space_to_depth.py -------------------------------------------------------------------------------- /lib/models_timm/layers/split_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/split_attn.py -------------------------------------------------------------------------------- /lib/models_timm/layers/split_batchnorm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/split_batchnorm.py -------------------------------------------------------------------------------- /lib/models_timm/layers/squeeze_excite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/squeeze_excite.py -------------------------------------------------------------------------------- /lib/models_timm/layers/std_conv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/std_conv.py -------------------------------------------------------------------------------- /lib/models_timm/layers/test_time_pool.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/test_time_pool.py -------------------------------------------------------------------------------- /lib/models_timm/layers/trace_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/trace_utils.py -------------------------------------------------------------------------------- /lib/models_timm/layers/weight_init.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/layers/weight_init.py -------------------------------------------------------------------------------- /lib/models_timm/levit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/levit.py -------------------------------------------------------------------------------- /lib/models_timm/maxxvit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/maxxvit.py -------------------------------------------------------------------------------- /lib/models_timm/mlp_mixer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/mlp_mixer.py -------------------------------------------------------------------------------- /lib/models_timm/mobilenetv3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/mobilenetv3.py -------------------------------------------------------------------------------- /lib/models_timm/mobilevit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/mobilevit.py -------------------------------------------------------------------------------- /lib/models_timm/mvitv2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/mvitv2.py -------------------------------------------------------------------------------- /lib/models_timm/nasnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/nasnet.py -------------------------------------------------------------------------------- /lib/models_timm/nest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/nest.py -------------------------------------------------------------------------------- /lib/models_timm/nfnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/nfnet.py -------------------------------------------------------------------------------- /lib/models_timm/pit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pit.py -------------------------------------------------------------------------------- /lib/models_timm/pnasnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pnasnet.py -------------------------------------------------------------------------------- /lib/models_timm/poolformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/poolformer.py -------------------------------------------------------------------------------- /lib/models_timm/pruned/ecaresnet101d_pruned.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pruned/ecaresnet101d_pruned.txt -------------------------------------------------------------------------------- /lib/models_timm/pruned/ecaresnet50d_pruned.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pruned/ecaresnet50d_pruned.txt -------------------------------------------------------------------------------- /lib/models_timm/pruned/efficientnet_b1_pruned.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pruned/efficientnet_b1_pruned.txt -------------------------------------------------------------------------------- /lib/models_timm/pruned/efficientnet_b2_pruned.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pruned/efficientnet_b2_pruned.txt -------------------------------------------------------------------------------- /lib/models_timm/pruned/efficientnet_b3_pruned.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pruned/efficientnet_b3_pruned.txt -------------------------------------------------------------------------------- /lib/models_timm/pvt_v2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/pvt_v2.py -------------------------------------------------------------------------------- /lib/models_timm/registry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/registry.py -------------------------------------------------------------------------------- /lib/models_timm/regnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/regnet.py -------------------------------------------------------------------------------- /lib/models_timm/res2net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/res2net.py -------------------------------------------------------------------------------- /lib/models_timm/resnest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/resnest.py -------------------------------------------------------------------------------- /lib/models_timm/resnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/resnet.py -------------------------------------------------------------------------------- /lib/models_timm/resnetv2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/resnetv2.py -------------------------------------------------------------------------------- /lib/models_timm/rexnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/rexnet.py -------------------------------------------------------------------------------- /lib/models_timm/selecsls.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/selecsls.py -------------------------------------------------------------------------------- /lib/models_timm/senet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/senet.py -------------------------------------------------------------------------------- /lib/models_timm/sequencer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/sequencer.py -------------------------------------------------------------------------------- /lib/models_timm/sknet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/sknet.py -------------------------------------------------------------------------------- /lib/models_timm/swin_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/swin_transformer.py -------------------------------------------------------------------------------- /lib/models_timm/swin_transformer_v2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/swin_transformer_v2.py -------------------------------------------------------------------------------- /lib/models_timm/swin_transformer_v2_cr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/swin_transformer_v2_cr.py -------------------------------------------------------------------------------- /lib/models_timm/tnt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/tnt.py -------------------------------------------------------------------------------- /lib/models_timm/tresnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/tresnet.py -------------------------------------------------------------------------------- /lib/models_timm/twins.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/twins.py -------------------------------------------------------------------------------- /lib/models_timm/vgg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/vgg.py -------------------------------------------------------------------------------- /lib/models_timm/visformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/visformer.py -------------------------------------------------------------------------------- /lib/models_timm/vision_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/vision_transformer.py -------------------------------------------------------------------------------- /lib/models_timm/vision_transformer_hybrid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/vision_transformer_hybrid.py -------------------------------------------------------------------------------- /lib/models_timm/vision_transformer_relpos.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/vision_transformer_relpos.py -------------------------------------------------------------------------------- /lib/models_timm/volo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/volo.py -------------------------------------------------------------------------------- /lib/models_timm/vovnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/vovnet.py -------------------------------------------------------------------------------- /lib/models_timm/xception.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/xception.py -------------------------------------------------------------------------------- /lib/models_timm/xception_aligned.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/xception_aligned.py -------------------------------------------------------------------------------- /lib/models_timm/xcit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/models_timm/xcit.py -------------------------------------------------------------------------------- /lib/networks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/networks.py -------------------------------------------------------------------------------- /lib/pvtv2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/pvtv2.py -------------------------------------------------------------------------------- /lib/pyramid_vig.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lib/pyramid_vig.py -------------------------------------------------------------------------------- /lists/lists_Synapse/all.lst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lists/lists_Synapse/all.lst -------------------------------------------------------------------------------- /lists/lists_Synapse/test_vol.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lists/lists_Synapse/test_vol.txt -------------------------------------------------------------------------------- /lists/lists_Synapse/train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/lists/lists_Synapse/train.txt -------------------------------------------------------------------------------- /qualitative_results_synapse.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/qualitative_results_synapse.png -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/requirements.txt -------------------------------------------------------------------------------- /test_ACDC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/test_ACDC.py -------------------------------------------------------------------------------- /test_ISIC2018.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/test_ISIC2018.py -------------------------------------------------------------------------------- /test_polyp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/test_polyp.py -------------------------------------------------------------------------------- /test_synapse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/test_synapse.py -------------------------------------------------------------------------------- /train_ACDC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/train_ACDC.py -------------------------------------------------------------------------------- /train_ISIC2018.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/train_ISIC2018.py -------------------------------------------------------------------------------- /train_polyp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/train_polyp.py -------------------------------------------------------------------------------- /train_synapse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/train_synapse.py -------------------------------------------------------------------------------- /trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/trainer.py -------------------------------------------------------------------------------- /utils/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/README.md -------------------------------------------------------------------------------- /utils/dataloader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/dataloader.py -------------------------------------------------------------------------------- /utils/dataset_ACDC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/dataset_ACDC.py -------------------------------------------------------------------------------- /utils/dataset_synapse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/dataset_synapse.py -------------------------------------------------------------------------------- /utils/format_conversion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/format_conversion.py -------------------------------------------------------------------------------- /utils/joint_transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/joint_transforms.py -------------------------------------------------------------------------------- /utils/lesion/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/lesion/helpers.py -------------------------------------------------------------------------------- /utils/lesion/lesion_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/lesion/lesion_dataset.py -------------------------------------------------------------------------------- /utils/lesion/make_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/lesion/make_dataset.py -------------------------------------------------------------------------------- /utils/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/misc.py -------------------------------------------------------------------------------- /utils/preprocess_synapse_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/preprocess_synapse_data.py -------------------------------------------------------------------------------- /utils/preprocess_synapse_data_3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/preprocess_synapse_data_3d.py -------------------------------------------------------------------------------- /utils/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/transforms.py -------------------------------------------------------------------------------- /utils/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SLDGroup/G-CASCADE/HEAD/utils/utils.py --------------------------------------------------------------------------------