├── .github └── workflows │ ├── docs.yml │ └── tests.yml ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── README.rst ├── docs ├── Makefile ├── _build │ ├── doctrees │ │ ├── api.doctree │ │ ├── environment.pickle │ │ ├── getting_started.doctree │ │ ├── index.doctree │ │ ├── references.doctree │ │ ├── tutorials │ │ │ ├── tutorial_cortex.doctree │ │ │ ├── tutorial_ownsurface.doctree │ │ │ └── tutorial_subcortex.doctree │ │ └── usage.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _images │ │ ├── getting_started1.png │ │ ├── getting_started2.png │ │ ├── tutorial_cortex1.png │ │ └── tutorial_cortex2.png │ │ ├── _sources │ │ ├── api.rst.txt │ │ ├── getting_started.rst.txt │ │ ├── index.rst.txt │ │ ├── references.rst.txt │ │ ├── tutorials │ │ │ ├── tutorial_cortex.rst.txt │ │ │ ├── tutorial_ownsurface.rst.txt │ │ │ └── tutorial_subcortex.rst.txt │ │ └── usage.rst.txt │ │ ├── _static │ │ ├── _sphinx_javascript_frameworks_compat.js │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ ├── fonts │ │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── fontawesome-webfont.woff2 │ │ │ │ ├── lato-bold-italic.woff │ │ │ │ ├── lato-bold-italic.woff2 │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-normal-italic.woff │ │ │ │ ├── lato-normal-italic.woff2 │ │ │ │ ├── lato-normal.woff │ │ │ │ └── lato-normal.woff2 │ │ │ └── theme.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── examples │ │ │ └── example_figs │ │ │ │ ├── getting_started1.png │ │ │ │ ├── getting_started2.png │ │ │ │ ├── tutorial_cortex1.png │ │ │ │ └── tutorial_cortex2.png │ │ ├── file.png │ │ ├── jquery-3.6.0.js │ │ ├── jquery.js │ │ ├── js │ │ │ ├── badge_only.js │ │ │ ├── html5shiv-printshiv.min.js │ │ │ ├── html5shiv.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.13.1.js │ │ └── underscore.js │ │ ├── api.html │ │ ├── genindex.html │ │ ├── getting_started.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── references.html │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── tutorials │ │ ├── tutorial_cortex.html │ │ ├── tutorial_ownsurface.html │ │ └── tutorial_subcortex.html │ │ └── usage.html ├── _static │ ├── examples │ │ └── example_figs │ │ │ ├── geometry1.png │ │ │ ├── getting_started1.png │ │ │ ├── getting_started2.png │ │ │ ├── tutorial_cortex1.png │ │ │ ├── tutorial_cortex2.png │ │ │ ├── tutorial_cortex3.png │ │ │ ├── tutorial_ownsurface1.png │ │ │ ├── tutorial_ownsurface2.png │ │ │ ├── tutorial_ownsurface3.png │ │ │ └── tutorial_subcortex1.png │ ├── main_figure.jpg │ └── theme_overrides.css ├── _templates │ ├── class.rst │ └── function.rst ├── api.rst ├── auto_examples │ ├── auto_examples_jupyter.zip │ ├── auto_examples_python.zip │ ├── images │ │ ├── sphx_glr_plot_surface_examples_001.png │ │ ├── sphx_glr_plot_surface_examples_002.png │ │ └── thumb │ │ │ └── sphx_glr_plot_surface_examples_thumb.png │ ├── index.rst │ ├── plot_surface_examples.ipynb │ ├── plot_surface_examples.py │ ├── plot_surface_examples.py.md5 │ ├── plot_surface_examples.rst │ ├── plot_surface_examples_codeobj.pickle │ ├── searchindex.db │ └── sg_execution_times.rst ├── conf.py ├── generated │ ├── eigenstrapping.SurfaceEigenstrapping.rst │ ├── eigenstrapping.VolumetricEigenstrapping.rst │ ├── eigenstrapping.dataio.dataio.rst │ ├── eigenstrapping.dataio.load.rst │ ├── eigenstrapping.dataio.load_surface.rst │ ├── eigenstrapping.datasets.fetch_data.rst │ ├── eigenstrapping.datasets.load_distmat.rst │ ├── eigenstrapping.datasets.load_genepc.rst │ ├── eigenstrapping.datasets.load_memmap.rst │ ├── eigenstrapping.datasets.load_subcort.rst │ ├── eigenstrapping.datasets.load_surface_examples.rst │ ├── eigenstrapping.datasets.txt2memmap.rst │ ├── eigenstrapping.fit.surface_fit.rst │ ├── eigenstrapping.fit.volumetric_fit.rst │ ├── eigenstrapping.geometry.calc_eig.rst │ ├── eigenstrapping.geometry.calc_surface_eigenmodes.rst │ ├── eigenstrapping.geometry.calc_volume.rst │ ├── eigenstrapping.geometry.compute_normals.rst │ ├── eigenstrapping.geometry.create_temp_surface.rst │ ├── eigenstrapping.geometry.euclidean_distmat.rst │ ├── eigenstrapping.geometry.geodesic_distmat.rst │ ├── eigenstrapping.geometry.get_tkrvox2ras.rst │ ├── eigenstrapping.geometry.inflate_mesh.rst │ ├── eigenstrapping.geometry.load_mesh.rst │ ├── eigenstrapping.geometry.make_tria_file.rst │ ├── eigenstrapping.geometry.nearest_neighbor.rst │ ├── eigenstrapping.geometry.normalize_vtk.rst │ ├── eigenstrapping.plotting.csplot.rst │ ├── eigenstrapping.plotting.flatplot.rst │ ├── eigenstrapping.plotting.meshplot.rst │ ├── eigenstrapping.plotting.vrange.rst │ ├── eigenstrapping.rotations.direct_method.rst │ ├── eigenstrapping.rotations.indirect_method.rst │ ├── eigenstrapping.rotations.rotate_matrix.rst │ ├── eigenstrapping.stats.compare_maps.rst │ ├── eigenstrapping.stats.conditional_entropy.rst │ ├── eigenstrapping.stats.distance_correlation.rst │ ├── eigenstrapping.stats.gpd_inference.rst │ ├── eigenstrapping.stats.joint_differential_entropy.rst │ ├── eigenstrapping.stats.kl.rst │ ├── eigenstrapping.stats.ks.rst │ ├── eigenstrapping.stats.msle.rst │ ├── eigenstrapping.stats.nonparp.rst │ ├── eigenstrapping.stats.normalize.rst │ ├── eigenstrapping.stats.pairwise_r.rst │ ├── eigenstrapping.stats.pearsonr.rst │ ├── eigenstrapping.stats.spearmanr.rst │ ├── eigenstrapping.utils.calc_parcellate.rst │ ├── eigenstrapping.utils.calc_surface_connectivity.rst │ ├── eigenstrapping.utils.compute_axes_ellipsoid.rst │ ├── eigenstrapping.utils.eigen_decomposition.rst │ ├── eigenstrapping.utils.get_schaefer.rst │ ├── eigenstrapping.utils.is_string_like.rst │ ├── eigenstrapping.utils.parcellate_distmat.rst │ ├── eigenstrapping.utils.parcify.rst │ ├── eigenstrapping.utils.reconstruct_data.rst │ ├── eigenstrapping.utils.transform_to_ellipsoid.rst │ ├── eigenstrapping.utils.transform_to_spheroid.rst │ └── modules │ │ ├── eigenstrapping.SurfaceEigenstrapping.eigen_decomposition.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.eigen_spectrum.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.generate.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.plot_data.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.resample_eigenspace.examples │ │ ├── eigenstrapping.SurfaceEigenstrapping.rotate_modes.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.calc_volume.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.calc_volume_eigenmodes.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.calculate_distance_matrix.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.eigen_spectrum.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.generate.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.make_tetra.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.normalize_vtk.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.project_to_tetra.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.resample_data.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.rotate_modes.examples │ │ ├── eigenstrapping.VolumetricEigenstrapping.surfplot.examples │ │ ├── eigenstrapping.dataio.dataio.examples │ │ ├── eigenstrapping.dataio.examples │ │ ├── eigenstrapping.dataio.load.examples │ │ ├── eigenstrapping.dataio.load_surface.examples │ │ ├── eigenstrapping.datasets.examples │ │ ├── eigenstrapping.datasets.fetch_data.examples │ │ ├── eigenstrapping.datasets.load_distmat.examples │ │ ├── eigenstrapping.datasets.load_genepc.examples │ │ ├── eigenstrapping.datasets.load_memmap.examples │ │ ├── eigenstrapping.datasets.load_subcort.examples │ │ ├── eigenstrapping.datasets.load_surface_examples.examples │ │ ├── eigenstrapping.datasets.txt2memmap.examples │ │ ├── eigenstrapping.examples │ │ ├── eigenstrapping.fit.examples │ │ ├── eigenstrapping.fit.surface_fit.examples │ │ ├── eigenstrapping.fit.volumetric_fit.examples │ │ ├── eigenstrapping.geometry.calc_eig.examples │ │ ├── eigenstrapping.geometry.calc_surface_eigenmodes.examples │ │ ├── eigenstrapping.geometry.calc_volume.examples │ │ ├── eigenstrapping.geometry.compute_normals.examples │ │ ├── eigenstrapping.geometry.create_temp_surface.examples │ │ ├── eigenstrapping.geometry.euclidean_distmat.examples │ │ ├── eigenstrapping.geometry.examples │ │ ├── eigenstrapping.geometry.geodesic_distmat.examples │ │ ├── eigenstrapping.geometry.get_tkrvox2ras.examples │ │ ├── eigenstrapping.geometry.inflate_mesh.examples │ │ ├── eigenstrapping.geometry.load_mesh.examples │ │ ├── eigenstrapping.geometry.make_tria_file.examples │ │ ├── eigenstrapping.geometry.nearest_neighbor.examples │ │ ├── eigenstrapping.geometry.normalize_vtk.examples │ │ ├── eigenstrapping.plotting.csplot.examples │ │ ├── eigenstrapping.plotting.examples │ │ ├── eigenstrapping.plotting.flatplot.examples │ │ ├── eigenstrapping.plotting.meshplot.examples │ │ ├── eigenstrapping.plotting.vrange.examples │ │ ├── eigenstrapping.rotations.direct_method.examples │ │ ├── eigenstrapping.rotations.examples │ │ ├── eigenstrapping.rotations.indirect_method.examples │ │ ├── eigenstrapping.rotations.rotate_matrix.examples │ │ ├── eigenstrapping.stats.compare_maps.examples │ │ ├── eigenstrapping.stats.conditional_entropy.examples │ │ ├── eigenstrapping.stats.distance_correlation.examples │ │ ├── eigenstrapping.stats.examples │ │ ├── eigenstrapping.stats.gpd_inference.examples │ │ ├── eigenstrapping.stats.joint_differential_entropy.examples │ │ ├── eigenstrapping.stats.kl.examples │ │ ├── eigenstrapping.stats.ks.examples │ │ ├── eigenstrapping.stats.msle.examples │ │ ├── eigenstrapping.stats.nonparp.examples │ │ ├── eigenstrapping.stats.normalize.examples │ │ ├── eigenstrapping.stats.pairwise_r.examples │ │ ├── eigenstrapping.stats.pearsonr.examples │ │ ├── eigenstrapping.stats.spearmanr.examples │ │ ├── eigenstrapping.utils.calc_parcellate.examples │ │ ├── eigenstrapping.utils.calc_surface_connectivity.examples │ │ ├── eigenstrapping.utils.compute_axes_ellipsoid.examples │ │ ├── eigenstrapping.utils.eigen_decomposition.examples │ │ ├── eigenstrapping.utils.examples │ │ ├── eigenstrapping.utils.get_schaefer.examples │ │ ├── eigenstrapping.utils.is_string_like.examples │ │ ├── eigenstrapping.utils.parcellate_distmat.examples │ │ ├── eigenstrapping.utils.parcify.examples │ │ ├── eigenstrapping.utils.reconstruct_data.examples │ │ ├── eigenstrapping.utils.transform_to_ellipsoid.examples │ │ └── eigenstrapping.utils.transform_to_spheroid.examples ├── getting_started.rst ├── index.rst ├── make.bat ├── references.rst ├── requirements.txt ├── sg_execution_times.rst ├── tutorials │ ├── base.rst │ ├── datasets.rst │ ├── geometry.rst │ ├── tutorial_cortex.rst │ ├── tutorial_ownsurface.rst │ └── tutorial_subcortex.rst └── usage.rst ├── eigenstrapping ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-312.pyc │ ├── base.cpython-312.pyc │ ├── dataio.cpython-312.pyc │ ├── geometry.cpython-312.pyc │ ├── rotations.cpython-312.pyc │ ├── stats.cpython-312.pyc │ └── utils.cpython-312.pyc ├── base.py ├── dataio.py ├── datasets │ ├── HarvardOxford │ │ ├── hcp_hippo-lh_gradient_1.txt │ │ ├── hcp_hippo-lh_thr25.nii.gz │ │ ├── hcp_stri-lh_gradient_1.txt │ │ ├── hcp_stri-lh_thr25.nii.gz │ │ ├── hcp_tha-lh_gradient_1.txt │ │ └── hcp_tha-lh_thr25.nii.gz │ ├── __init__.py │ ├── base.py │ ├── brainmaps │ │ ├── fsLR32k_lh.gii │ │ ├── fsLR32k_rh.gii │ │ ├── fsaverage5_lh.gii │ │ ├── fsaverage5_rh.gii │ │ ├── hcp_example_contrast.txt │ │ └── nsynth_gradient_lh.txt │ ├── masks │ │ ├── fsaverage5_lh.txt │ │ └── 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