├── .gitignore ├── CMakeLists.txt ├── LICENSE ├── Makefile ├── README ├── TODO ├── doc ├── CMakeLists.txt ├── GiDExample │ ├── README_GiDExample │ └── zhen.gid │ │ ├── zhen.111 │ │ ├── zhen.bas │ │ ├── zhen.cnd │ │ └── zhen.mat ├── acknowledgements.tex ├── authors.tex ├── chap1_introduction.tex ├── chap2_getting_started.tex ├── chap3_input.tex ├── chap4_output_and_visualization.tex ├── chap5_utilities.tex ├── chap6_tutorials.tex ├── chicago.bst ├── cmake.pdf ├── compile_LaTeX_manual.sh ├── cover.pdf ├── cubit_example.pdf ├── cubit_example_disp.pdf ├── cubit_example_parallel.pdf ├── licensing.tex ├── manual_SPECFEM3D_GEOTECH.bib ├── manual_SPECFEM3D_GEOTECH.pdf ├── manual_SPECFEM3D_GEOTECH.tex └── slope_model.pdf ├── input ├── cubit_example.jou ├── cubit_example.psem ├── cubit_example.sem ├── cubit_example_connectivity ├── cubit_example_coord_x ├── cubit_example_coord_y ├── cubit_example_coord_z ├── cubit_example_material_id ├── cubit_example_material_list ├── cubit_example_ssbcux ├── cubit_example_ssbcuy ├── cubit_example_ssbcuz ├── elastic.sem ├── example1.psem ├── example1_connectivity ├── example1_coord_x ├── example1_coord_y ├── example1_coord_z ├── example1_material_id ├── example1_material_list ├── example1_nowater.psem ├── example1_nowater.sem ├── example1_ssbcux ├── example1_ssbcuy ├── example1_ssbcuz ├── example1_trfile ├── example1_wsfile ├── example2.psem ├── example2_connectivity ├── example2_coord_x ├── example2_coord_y ├── example2_coord_z ├── example2_left_fixed.psem ├── example2_left_fixed_connectivity ├── example2_left_fixed_coord_x ├── example2_left_fixed_coord_y ├── example2_left_fixed_coord_z ├── example2_left_fixed_material_id ├── example2_left_fixed_material_list ├── example2_left_fixed_ssbcux ├── example2_left_fixed_ssbcuy ├── example2_left_fixed_ssbcuz ├── example2_material_id ├── example2_material_list ├── example2_ssbcux ├── example2_ssbcuy ├── example2_ssbcuz ├── excavation_1d.sem ├── excavation_1d_connectivity ├── excavation_1d_coord_x ├── excavation_1d_coord_y ├── excavation_1d_coord_z ├── excavation_1d_material_id ├── excavation_1d_material_list ├── excavation_1d_ssbcux ├── excavation_1d_ssbcuy ├── excavation_1d_ssbcuz ├── excavation_2d.sem ├── excavation_2d_connectivity ├── excavation_2d_coord_x ├── excavation_2d_coord_y ├── excavation_2d_coord_z ├── excavation_2d_elastic.sem ├── excavation_2d_elastic_single.sem ├── excavation_2d_material_id ├── excavation_2d_material_list ├── excavation_2d_single.sem ├── excavation_2d_ssbcux ├── excavation_2d_ssbcuy ├── excavation_2d_ssbcuz ├── excavation_3d.psem ├── excavation_3d.sem ├── excavation_3d_connectivity ├── excavation_3d_coord_x ├── excavation_3d_coord_y ├── excavation_3d_coord_z ├── excavation_3d_elastic.psem ├── excavation_3d_elastic.sem ├── excavation_3d_elastic_single.psem ├── excavation_3d_elastic_single.sem ├── excavation_3d_material_id ├── excavation_3d_material_list ├── excavation_3d_single.psem ├── excavation_3d_single.sem ├── excavation_3d_single_connectivity ├── excavation_3d_ssbcux ├── excavation_3d_ssbcuy ├── excavation_3d_ssbcuz ├── excavation_mine.psem ├── excavation_mine_connectivity ├── excavation_mine_coord_x ├── excavation_mine_coord_y ├── excavation_mine_coord_z ├── excavation_mine_material_id ├── excavation_mine_material_lis ├── excavation_mine_material_list ├── excavation_mine_ssbcux ├── excavation_mine_ssbcuy ├── excavation_mine_ssbcuz ├── validation1.psem ├── validation1.sem ├── validation1_connectivity ├── validation1_coord_x ├── validation1_coord_y ├── validation1_coord_z ├── validation1_material_id ├── validation1_material_list ├── validation1_phinu.sem ├── validation1_ssbcux ├── validation1_ssbcuy ├── validation1_ssbcuz ├── validation2.psem ├── validation2.sem ├── validation2_connectivity ├── validation2_coord_x ├── validation2_coord_y ├── validation2_coord_z ├── validation2_material_id ├── validation2_material_list ├── validation2_ssbcux ├── validation2_ssbcuy ├── validation2_ssbcuz ├── validation3.psem ├── validation3.sem ├── validation3_connectivity ├── validation3_coord_x ├── validation3_coord_y ├── validation3_coord_z ├── validation3_material_id ├── validation3_material_list ├── validation3_ssbcux ├── validation3_ssbcuy ├── validation3_ssbcuz ├── validation3_wsfile ├── validation3_wsfile.sem ├── validation4.psem ├── validation4.sem └── validation4_new.sem ├── src ├── CMakeLists.txt ├── Makefile ├── apply_bc.f90 ├── apply_traction.f90 ├── compute_pressure.f90 ├── elastic.f90 ├── element.f90 ├── excavation.F90 ├── excavation_library.f90 ├── ghost_library_mpi.f90 ├── gll_library.f90 ├── global.f90 ├── integration.f90 ├── math_library.f90 ├── math_library_mpi.f90 ├── math_library_serial.f90 ├── mesh_spec.f90 ├── mpi_library.f90 ├── partmesh.f90 ├── partmesh_library.f90 ├── partmesh_scotch.f90 ├── plastic_library.f90 ├── postprocess.f90 ├── preprocess.f90 ├── read_input.f90 ├── scotchf.h ├── semgeotech.F90 ├── serial_library.f90 ├── set_precision_mpi.f90 ├── 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