├── .github └── workflows │ └── pylint.yml ├── Figure.png ├── LICENSE ├── README.md ├── finetune └── downstream_tasks │ ├── mgca │ ├── datasets │ │ ├── classification_dataset.py │ │ ├── data_module.py │ │ ├── detection_dataset.py │ │ ├── pretrain_dataset.py │ │ ├── random_augment.py │ │ ├── segmentation_dataset.py │ │ ├── transforms.py │ │ └── utils.py │ ├── models │ │ ├── backbones │ │ │ ├── cnn_backbones.py │ │ │ ├── convirt_finetuner.py │ │ │ ├── convirt_module.py │ │ │ ├── detector_backbone.py │ │ │ ├── encoder.py │ │ │ ├── med.py │ │ │ ├── transformer_model.py │ │ │ ├── transformer_seg.py │ │ │ └── vits.py │ │ ├── convirt │ │ │ ├── convirt_finetuner.py │ │ │ └── convirt_module.py │ │ └── mgca │ │ │ ├── CLIP_visual.py │ │ │ ├── MRM_finetuner.py │ │ │ ├── Pretrain_MedKLIP.yaml │ │ │ ├── cal_sim.py │ │ │ ├── med_unic_model.py │ │ │ ├── med_unic_vit_finetuner.py │ │ │ ├── med_unic_vit_segmenter.py │ │ │ ├── medklip_finetuner.py │ │ │ ├── mgca_detector.py │ │ │ ├── mgca_finetuner.py │ │ │ ├── mgca_module.py │ │ │ ├── mgca_segmenter.py │ │ │ ├── mgca_vit_finetuner.py │ │ │ ├── model_MedKLIP.py │ │ │ ├── randaugment.py │ │ │ ├── rsna_run_seg_finetune.sh │ │ │ ├── run_cls_finetune.sh │ │ │ ├── run_det_finetune.sh │ │ │ ├── run_finetuner.py │ │ │ ├── test.py │ │ │ ├── test_img.py │ │ │ ├── test_mrm.py │ │ │ ├── utils_builder.py │ │ │ └── vits.py │ ├── preprocess │ │ ├── chexpert.py │ │ ├── constants.py │ │ ├── covidx.py │ │ ├── filter_chexpert.py │ │ ├── mimic_cxr.py │ │ ├── object_cxr.py │ │ ├── rsna.py │ │ ├── siim.py │ │ └── utils.py │ └── utils │ │ ├── box_ops.py │ │ ├── detection_utils.py │ │ ├── segmentation_loss.py │ │ └── yolo_loss.py │ ├── requirments.txt │ └── setup.py ├── generate_mix_corpus ├── build_random_vocab.py ├── build_sp_vocab.py ├── convert_csv_to_json_en.py ├── convert_csv_to_json_sp.py ├── generate_CXRBert_vocab.py ├── mix_json.py ├── preprocess_spanish.py └── tokenize_pretrain_data.py ├── gpt ├── __init__.py ├── configuration.py ├── file_utils.py ├── modeling.py ├── optimization.py └── tokenization.py ├── main_mmodal.py ├── preprocess_img.py ├── pretraining_CXRBert.py ├── randaugment.py ├── requirements.txt ├── run_pretraining_cxrbert.sh ├── run_pretraining_mmodal.sh ├── run_pretraining_mmodal_local.sh ├── starter_pretrain_cxrbert.py ├── starter_pretrain_mmodal.py ├── transformer ├── __init__.py ├── file_utils.py ├── modeling_base.py ├── modeling_cxrbert.py ├── optimization.py └── tokenization.py ├── utils_builder.py ├── utils_dataset.py ├── utils_optimizer.py ├── utils_trainer.py ├── vits.py └── zero-shot ├── data_preprocess.py ├── preprocess_padchest.py ├── preprocess_pdc.py ├── test_sample.csv ├── test_sample_sp.csv ├── utils_builder_med_unic.py ├── utils_builder_med_unic_vit.py ├── vits.py ├── zero_shot.py └── zero_shot_pdc.py /.github/workflows/pylint.yml: -------------------------------------------------------------------------------- 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