├── .clang-format ├── .gitignore ├── .gitmodules ├── AUTHORS ├── CITATION.cff ├── CONTRIBUTING.md ├── COPYING ├── COPYING.LESSER ├── ChangeLog ├── INSTALL.swift ├── Makefile.am ├── NEWS ├── README ├── README-mpi-hints.md ├── README.md ├── argparse ├── FAQs.md ├── LICENSE ├── Makefile.am ├── OWNERS ├── README.md ├── argparse.c ├── argparse.h ├── tap-functions ├── test.sh └── test_argparse.c ├── autogen.sh ├── configure.ac ├── doc ├── Doxyfile.in ├── Makefile.am ├── RTD │ ├── .gitignore │ ├── Makefile │ ├── README.md │ └── source │ │ ├── AnalysisTools │ │ └── index.rst │ │ ├── CSDS │ │ └── index.rst │ │ ├── CitingSWIFT │ │ ├── SWIFT_logo.png │ │ └── index.rst │ │ ├── CommandLineOptions │ │ └── index.rst │ │ ├── EquationOfState │ │ └── index.rst │ │ ├── ExternalPotentials │ │ └── index.rst │ │ ├── FriendsOfFriends │ │ ├── algorithm_description.rst │ │ ├── index.rst │ │ ├── on_the_fly_fof.rst │ │ ├── parameter_description.rst │ │ └── stand_alone_fof.rst │ │ ├── GettingStarted │ │ ├── compiling_code.rst │ │ ├── configuration_options.rst │ │ ├── index.rst │ │ ├── running_example.rst │ │ ├── running_on_large_systems.rst │ │ ├── runtime_options.rst │ │ ├── special_modes.rst │ │ └── what_about_mpi.rst │ │ ├── HydroSchemes │ │ ├── adaptive_softening.rst │ │ ├── adding_your_own.rst │ │ ├── anarchy_sph.rst │ │ ├── gasoline_sph.rst │ │ ├── gizmo.rst │ │ ├── hopkins_sph.rst │ │ ├── hydro.dot │ │ ├── hydro.png │ │ ├── index.rst │ │ ├── minimal_sph.rst │ │ ├── phantom_sph.rst │ │ ├── planetary_sph.rst │ │ ├── remix_sph.rst │ │ ├── shadowswift.rst │ │ ├── sphenix_sph.rst │ │ └── traditional_sph.rst │ │ ├── ImplementationDetails │ │ └── index.rst │ │ ├── InitialConditions │ │ └── index.rst │ │ ├── LightCones │ │ ├── adding_outputs.rst │ │ ├── algorithm_description.rst │ │ ├── index.rst │ │ ├── lightcone_healpix_maps.rst │ │ ├── lightcone_particle_output.rst │ │ └── running_with_lightcones.rst │ │ ├── LineOfSights │ │ └── index.rst │ │ ├── Neutrinos │ │ └── index.rst │ │ ├── NewOption │ │ ├── index.rst │ │ └── sink_adding_new_scheme.rst │ │ ├── ParameterFiles │ │ ├── index.rst │ │ ├── lossy_filters.rst │ │ ├── output_selection.rst │ │ └── parameter_description.rst │ │ ├── Planetary │ │ ├── equations_of_state.rst │ │ ├── hydro_scheme.rst │ │ ├── index.rst │ │ ├── initial_conditions.rst │ │ └── removed_particles.rst │ │ ├── RadiativeTransfer │ │ ├── GEAR_RT.rst │ │ ├── RTTaskDependenciesFull-simplified.png │ │ ├── RTWorkflow.png │ │ ├── RT_general.rst │ │ ├── RT_notes_for_developers.rst │ │ ├── SPHM1_RT.rst │ │ ├── additional_tools.rst │ │ ├── full_dependency_graph_RT.dot │ │ ├── index.rst │ │ └── make_graphs.py │ │ ├── Snapshots │ │ └── index.rst │ │ ├── SubgridModels │ │ ├── AGNSpinJets │ │ │ ├── index.rst │ │ │ ├── numerics.rst │ │ │ ├── output.rst │ │ │ ├── params.rst │ │ │ ├── plots.py │ │ │ ├── theory.rst │ │ │ └── variable_heating_temperatures.rst │ │ ├── AGORA │ │ │ └── index.rst │ │ ├── Basic │ │ │ └── index.rst │ │ ├── EAGLE │ │ │ ├── index.rst │ │ │ ├── plot_EAGLE_SF_EOS.py │ │ │ ├── plot_EAGLE_SF_Z_dep.py │ │ │ └── plot_EAGLE_entropy_floor.py │ │ ├── GEAR │ │ │ ├── chemistry.rst │ │ │ ├── feedback.rst │ │ │ ├── feedback_table.dot │ │ │ ├── gear_model.rst │ │ │ ├── index.rst │ │ │ ├── output.rst │ │ │ ├── sinks │ │ │ │ ├── index.rst │ │ │ │ ├── introduction.rst │ │ │ │ ├── params.rst │ │ │ │ ├── sink_accretion_radius.png │ │ │ │ ├── sink_imf.png │ │ │ │ ├── sink_overlapping.png │ │ │ │ ├── sink_scheme.png │ │ │ │ ├── sink_timesteps.rst │ │ │ │ └── theory.rst │ │ │ └── supernova_feedback.rst │ │ ├── QuickLymanAlpha │ │ │ └── index.rst │ │ └── index.rst │ │ ├── Task │ │ ├── adding_to_dependency_plotting_tool.rst │ │ ├── adding_your_own.rst │ │ ├── adding_your_own_neighbour_loop.rst │ │ ├── current_dependencies.rst │ │ ├── grav.dot │ │ ├── grav.png │ │ ├── index.rst │ │ ├── locks.rst │ │ ├── reduced.dot │ │ ├── reduced.png │ │ ├── sink.dot │ │ ├── sink.png │ │ ├── stars.dot │ │ └── stars.png │ │ ├── TimeStepping │ │ ├── index.rst │ │ ├── integer_time_line.rst │ │ ├── timestep_limiter.rst │ │ └── timestep_synchronization.rst │ │ ├── VELOCIraptorInterface │ │ ├── index.rst │ │ ├── orphanparticles.rst │ │ ├── output.rst │ │ ├── stfalone.rst │ │ ├── stfwithswift.rst │ │ └── whatis.rst │ │ ├── conf.py │ │ └── index.rst └── onboardingGuide │ ├── Makefile │ ├── README.md │ └── source │ ├── conf.py │ ├── dependencies.rst │ ├── getting_help.rst │ ├── getting_the_code.rst │ ├── header_first_page.rst │ ├── header_page1.jpg │ ├── header_page2.jpg │ ├── header_second_page.rst │ ├── index.rst │ ├── initial_setup.rst │ ├── logo │ ├── BirdBW.pdf │ ├── BirdW.pdf │ └── JustTheBird.pdf │ ├── running_example.rst │ ├── runtime_options.rst │ ├── submission_script.rst │ ├── useful_configuration_flags.rst │ └── what_swift_can_do.rst ├── examples ├── AGORA │ └── AgoraDisk │ │ ├── README │ │ ├── agora_disk.yml │ │ ├── checkSolution.py │ │ ├── getGrackleCoolingTable.sh │ │ ├── getIC.sh │ │ └── run.sh ├── ChemistryTests │ ├── MetalAdvectionTestEAGLE │ │ ├── README │ │ ├── advect_metals.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotAdvectedMetals.py │ │ ├── run.sh │ │ └── runSanityChecksAdvectedMetals.py │ └── MetalAdvectionTestGEAR │ │ ├── README │ │ ├── advect_metals.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotAdvectedMetals.py │ │ ├── run.sh │ │ └── runSanityChecksAdvectedMetals.py ├── Cooling │ ├── ConstantCosmoTempEvolution │ │ ├── README │ │ ├── const_cosmo_temp_evol.yml │ │ ├── datasets │ │ │ ├── schaye_et_al_2000_thermal_history.dat │ │ │ └── walther_et_al_2019_thermal_history.dat │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plot_thermal_history.py │ │ └── run.sh │ ├── CoolingBox │ │ ├── README │ │ ├── coolingBox.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotEnergy.py │ │ └── run.sh │ ├── CoolingHalo │ │ ├── README │ │ ├── cooling_halo.yml │ │ ├── density_profile.py │ │ ├── internal_energy_profile.py │ │ ├── makeIC.py │ │ ├── makeIC_random_box.py │ │ ├── run.sh │ │ ├── test_energy_conservation.py │ │ └── velocity_profile.py │ ├── CoolingHaloWithSpin │ │ ├── README │ │ ├── cooling_halo.yml │ │ ├── density_profile.py │ │ ├── internal_energy_profile.py │ │ ├── makeIC.py │ │ ├── makeIC_random_box.py │ │ ├── run.sh │ │ ├── test_energy_conservation.py │ │ └── velocity_profile.py │ ├── CoolingHeatingBox │ │ ├── README │ │ ├── coolingBox.yml │ │ ├── getGlass.sh │ │ ├── getResults.sh │ │ ├── makeIC.py │ │ ├── plotResults.py │ │ └── run.sh │ ├── CoolingRates │ │ ├── Makefile.am │ │ ├── README │ │ ├── cooling_rates.c │ │ ├── cooling_rates.yml │ │ └── plot_cooling_rates.py │ ├── CoolingRedshiftDependence │ │ ├── .gitignore │ │ ├── cooling_redshift_dependence_high_z.yml │ │ ├── cooling_redshift_dependence_low_z.yml │ │ ├── cooling_redshift_dependence_no_z.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── CoolingSedovBlast_3D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── get_time_profile.py │ │ ├── makeIC.py │ │ ├── make_visualisations.make │ │ ├── plot_energy.py │ │ ├── plot_profile.py │ │ ├── plot_time_profile.py │ │ ├── run.make │ │ └── sedov.yml │ ├── CoolingWithPrimordialElements │ │ ├── CoolingWithPrimordialElements.yml │ │ ├── README │ │ ├── faure2024.dat │ │ ├── getICs.sh │ │ ├── getPrimordialAbundances.py │ │ ├── local.mplstyle │ │ ├── output_list.txt │ │ ├── plotAbundances.py │ │ └── run.sh │ ├── FeedbackEvent_3D │ │ ├── .gitignore │ │ ├── README.md │ │ ├── feedback.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotEnergy.py │ │ ├── plotEnergyAll.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── runs.sh │ ├── getEagleCoolingTable.sh │ ├── getGrackleCoolingTable.sh │ └── getPS2020CoolingTables.sh ├── Cosmology │ ├── ComovingSodShock_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── ComovingSodShock_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── ComovingSodShock_3D │ │ ├── README.txt │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── ComovingToroTest2_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── toroTest2.yml │ ├── ConstantCosmoVolume │ │ ├── Gadget2 │ │ │ ├── README │ │ │ └── constant_volume.param │ │ ├── README │ │ ├── constant_volume.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── NeutrinoCosmo │ │ ├── getIC.sh │ │ ├── neutrino_cosmo.yml │ │ └── run.sh │ └── ZeldovichPancake_3D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── zeldovichPancake.yml ├── EAGLE_DMO_low_z │ ├── EAGLE_DMO_100 │ │ ├── README │ │ ├── eagle_100.yml │ │ ├── getIC.sh │ │ └── run.sh │ ├── EAGLE_DMO_12 │ │ ├── README │ │ ├── eagle_12.yml │ │ ├── getIC.sh │ │ └── run.sh │ ├── EAGLE_DMO_25 │ │ ├── README │ │ ├── eagle_25.yml │ │ ├── getIC.sh │ │ └── run.sh │ ├── EAGLE_DMO_50 │ │ ├── README │ │ ├── eagle_50.yml │ │ ├── getIC.sh │ │ └── run.sh │ └── README ├── EAGLE_ICs │ ├── EAGLE_100 │ │ ├── README │ │ ├── eagle_100.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_12 │ │ ├── README │ │ ├── eagle_12.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_25 │ │ ├── README │ │ ├── eagle_25.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_25_low_res │ │ ├── README │ │ ├── eagle_25.yml │ │ ├── getIC.sh │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_50 │ │ ├── README │ │ ├── eagle_50.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_50_low_res │ │ ├── README │ │ ├── eagle_50.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── EAGLE_6 │ │ ├── README │ │ ├── eagle_6.yml │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── README │ ├── getEagleCoolingTable.sh │ ├── getEaglePhotometryTable.sh │ ├── getEagleYieldTable.sh │ └── getPS2020CoolingTables.sh ├── EAGLE_low_z │ ├── EAGLE_100 │ │ ├── README │ │ ├── eagle_100.yml │ │ ├── getIC.sh │ │ └── run.sh │ ├── EAGLE_12 │ │ ├── README │ │ ├── eagle_12.yml │ │ ├── eagle_12_rt_test.yml │ │ ├── getIC.sh │ │ ├── run.sh │ │ └── run_rt_test.sh │ ├── EAGLE_25 │ │ ├── README │ │ ├── eagle_25.yml │ │ ├── eagle_25_rt_test.yml │ │ ├── getIC.sh │ │ ├── run.sh │ │ └── run_rt_test.sh │ ├── EAGLE_50 │ │ ├── README │ │ ├── eagle_50.yml │ │ ├── getIC.sh │ │ └── run.sh │ ├── EAGLE_6 │ │ ├── README │ │ ├── check_fof.py │ │ ├── eagle_6.yml │ │ ├── getIC.sh │ │ ├── run.sh │ │ └── testVELOCIraptor.sh │ └── README ├── GEAR │ ├── AgoraCosmo │ │ ├── README │ │ ├── agora_cosmo.yml │ │ ├── convert_ic.py │ │ ├── getChemistryTable.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── getIC.sh │ │ ├── music.conf │ │ ├── output_list.txt │ │ └── run.sh │ ├── AgoraDisk │ │ ├── README │ │ ├── agora_disk.yml │ │ ├── checkSolution.py │ │ ├── getChemistryTable.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── getIC.sh │ │ ├── getSolution.sh │ │ └── run.sh │ ├── ZoomIn │ │ ├── README │ │ ├── getChemistryTable.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── getIC.sh │ │ ├── getSolution.sh │ │ ├── run.sh │ │ ├── snaplist.txt │ │ └── zoom_in.yml │ └── getChemistryTable.sh ├── GravityTests │ ├── DiscPatch │ │ ├── GravityOnly │ │ │ ├── README │ │ │ ├── disc-patch.yml │ │ │ ├── makeIC.py │ │ │ ├── run.sh │ │ │ └── test.py │ │ ├── HydroStatic │ │ │ ├── README │ │ │ ├── disc-patch-icc.yml │ │ │ ├── disc-patch.yml │ │ │ ├── getGlass.sh │ │ │ ├── makeIC.py │ │ │ ├── plotSolution.py │ │ │ └── run.sh │ │ └── HydroStatic_1D │ │ │ ├── disc-patch-icc.yml │ │ │ ├── makeIC.py │ │ │ ├── plotSolution.py │ │ │ └── run.sh │ ├── ExternalPointMass │ │ ├── energy_plot.py │ │ ├── externalPointMass.yml │ │ ├── makeIC.py │ │ └── run.sh │ ├── Gravity_glass │ │ ├── README │ │ ├── makeIC.py │ │ └── uniform_DM_box.yml │ ├── Hernquist_circularorbit │ │ ├── hernquistcirc.yml │ │ ├── makeIC.py │ │ ├── plotprog.py │ │ └── run.sh │ ├── Hernquist_radialinfall │ │ ├── README │ │ ├── hernquist.yml │ │ ├── makeIC.py │ │ ├── plotprog.py │ │ └── run.sh │ ├── HydrostaticHalo │ │ ├── README │ │ ├── density_profile.py │ │ ├── hydrostatic.yml │ │ ├── internal_energy_profile.py │ │ ├── makeIC.py │ │ ├── run.sh │ │ ├── test_energy_conservation.py │ │ └── velocity_profile.py │ ├── IsothermalPotential │ │ ├── README │ │ ├── energy_plot.py │ │ ├── isothermal.yml │ │ ├── makeIC.py │ │ └── run.sh │ ├── JeansFragmentation │ │ ├── jeansfragmentation.yml │ │ ├── makeIC.py │ │ └── run.sh │ ├── MWPotential2014_circularorbit │ │ ├── README │ │ ├── makeIC.py │ │ ├── makePlots.py │ │ ├── original_radii.txt │ │ ├── params_unit_1.yml │ │ ├── params_unit_2.yml │ │ └── run.sh │ ├── MWPotential2014_df │ │ ├── README │ │ ├── makeIC.py │ │ ├── makePlots.py │ │ ├── params_unit_1.yml │ │ ├── params_unit_2.yml │ │ └── run.sh │ ├── NFW_Halo │ │ ├── README │ │ ├── makeIC.py │ │ ├── makePlots.py │ │ ├── run.sh │ │ └── test.yml │ └── Plummer_Selfgravitating │ │ ├── README │ │ ├── params.yml │ │ ├── plotdensity.py │ │ ├── plummerIC.py │ │ └── run.sh ├── HydroTests │ ├── BlobTest_3D │ │ ├── README.md │ │ ├── blob.yml │ │ ├── makeIC.py │ │ ├── makeMovie.py │ │ ├── makeSliceMovie.py │ │ └── run.sh │ ├── BlobTest_Braspenning2022 │ │ ├── README.md │ │ ├── blob.yml │ │ ├── getICs.sh │ │ └── plot_cloud_evolution.py │ ├── Diffusion_1D │ │ ├── .gitignore │ │ ├── README │ │ ├── diffusion.yml │ │ ├── diffusion_fixed_alpha.yml │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── run_set.sh │ ├── EvrardCollapse_3D │ │ ├── evrard.yml │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotEnergy.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── Gradients │ │ ├── gradientsCartesian.yml │ │ ├── gradientsRandom.yml │ │ ├── gradientsStretched.yml │ │ ├── makeICs.py │ │ ├── plot.py │ │ └── run.sh │ ├── GreshoVortex_2D │ │ ├── getGlass.sh │ │ ├── gresho.yml │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── GreshoVortex_3D │ │ ├── getGlass.sh │ │ ├── gresho.yml │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── InteractingBlastWaves_1D │ │ ├── getReference.sh │ │ ├── interactingBlastWaves.yml │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── KelvinHelmholtzGrowthRate_2D │ │ ├── getGlass.sh │ │ ├── kelvinHelmholtzGrowthRate.yml │ │ ├── makeIC.py │ │ ├── makeIC_regular.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── KelvinHelmholtzGrowthRate_3D │ │ ├── getGlass.sh │ │ ├── kelvinHelmholtzGrowthRate.yml │ │ ├── makeIC.py │ │ ├── makeIC_regular.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── KelvinHelmholtz_2D │ │ ├── kelvinHelmholtz.yml │ │ ├── makeIC.py │ │ ├── makeMovie.py │ │ ├── makeMovieSwiftsimIO.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── KeplerianRing │ │ ├── README.md │ │ ├── keplerian_ring.yml │ │ ├── makeIC.py │ │ ├── make_movie.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ ├── testplots.py │ │ └── write_gadget.py │ ├── NFW_Hydrostatic │ │ ├── NFW_Hydrostatic.yml │ │ ├── README │ │ ├── getICs.sh │ │ ├── plotGasDensityProfile.py │ │ └── run.sh │ ├── Noh_1D │ │ ├── makeIC.py │ │ ├── noh.yml │ │ ├── plotSolution.py │ │ └── run.sh │ ├── Noh_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── noh.yml │ │ ├── plotSolution.py │ │ └── run.sh │ ├── Noh_3D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── noh.yml │ │ ├── plotSolution.py │ │ └── run.sh │ ├── PerturbedBox_2D │ │ ├── makeIC.py │ │ └── perturbedPlane.yml │ ├── PerturbedBox_3D │ │ ├── makeIC.py │ │ ├── perturbedBox.yml │ │ └── run.sh │ ├── Rayleigh-Taylor_2D │ │ ├── README │ │ ├── generate_movie_from_png.sh │ │ ├── makeIC.py │ │ ├── makeMovie.py │ │ ├── plotInitialProfile.py │ │ ├── rayleigh_taylor.yml │ │ └── run.sh │ ├── SedovBlast_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sedov.yml │ ├── SedovBlast_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sedov.yml │ ├── SedovBlast_3D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sedov.yml │ ├── SineWavePotential_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sineWavePotential.yml │ ├── SineWavePotential_2D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sineWavePotential.yml │ ├── SineWavePotential_3D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sineWavePotential.yml │ ├── SodShockSpherical_2D │ │ ├── getGlass.sh │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SodShockSpherical_3D │ │ ├── getGlass.sh │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SodShock_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SodShock_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SodShock_3D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SodShock_BCC_3D │ │ ├── README │ │ ├── analyticSolution.py │ │ ├── makeGlass.py │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ ├── SquareTest_2D │ │ ├── README │ │ ├── makeIC.py │ │ ├── makeICDifferentMasses.py │ │ ├── makeMovie.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── square.yml │ ├── ToroTest2_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── toroTest2.yml │ ├── ToroTest2_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── toroTest2.yml │ ├── ToroTest2_3D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── toroTest2.yml │ ├── UniformBox_2D │ │ ├── makeIC.py │ │ ├── run.sh │ │ └── uniformPlane.yml │ ├── UniformBox_3D │ │ ├── makeIC.py │ │ ├── makeICbig.py │ │ ├── run.sh │ │ └── uniformBox.yml │ ├── VacuumSpherical_2D │ │ ├── getGlass.sh │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── vacuum.yml │ ├── VacuumSpherical_3D │ │ ├── getGlass.sh │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── vacuum.yml │ ├── Vacuum_1D │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── vacuum.yml │ ├── Vacuum_2D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── vacuum.yml │ ├── Vacuum_3D │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── vacuum.yml │ └── riemannSolver.py ├── IdealisedCluster │ ├── IdealisedCluster_M13 │ │ ├── getIC.sh │ │ ├── idealised_cluster_M13.yml │ │ └── run.sh │ ├── IdealisedCluster_M135 │ │ ├── getIC.sh │ │ ├── idealised_cluster_M135.yml │ │ └── run.sh │ ├── IdealisedCluster_M14 │ │ ├── getIC.sh │ │ ├── idealised_cluster_M14.yml │ │ └── run.sh │ ├── IdealisedCluster_M15 │ │ ├── getIC.sh │ │ ├── idealised_cluster_M15.yml │ │ └── run.sh │ ├── README │ ├── getEaglePhotometryTable.sh │ ├── getPS2020CoolingTables.sh │ └── getYieldTable.sh ├── IsolatedGalaxy │ ├── IsolatedGalaxy_NFW_MN │ │ ├── README │ │ ├── generate_MN.py │ │ ├── getIC.sh │ │ ├── isolated_galaxy.yml │ │ └── run.sh │ ├── IsolatedGalaxy_dmparticles │ │ ├── angularmomentum.py │ │ ├── getIC.sh │ │ ├── isolated_galaxy.yml │ │ ├── profilefit.py │ │ └── run.sh │ ├── IsolatedGalaxy_feedback │ │ ├── SFH.py │ │ ├── getEagleCoolingTable.sh │ │ ├── getEaglePhotometryTable.sh │ │ ├── getIC.sh │ │ ├── getPS2020CoolingTables.sh │ │ ├── getYieldTable.sh │ │ ├── isolated_galaxy.yml │ │ ├── plotSolution.py │ │ ├── plot_box_evolution.py │ │ └── run.sh │ ├── IsolatedGalaxy_multi_component │ │ ├── AGORA │ │ │ ├── README │ │ │ ├── getGrackleCoolingTable.sh │ │ │ ├── params.yml │ │ │ └── run.sh │ │ ├── EAGLE │ │ │ ├── README │ │ │ ├── getEagleCoolingTable.sh │ │ │ ├── getEaglePhotometryTable.sh │ │ │ ├── getPS2020CoolingTables.sh │ │ │ ├── getYieldTable.sh │ │ │ ├── params.yml │ │ │ └── run.sh │ │ ├── GEAR │ │ │ ├── README │ │ │ ├── getChemistryTable.sh │ │ │ ├── getGrackleCoolingTable.sh │ │ │ ├── params.yml │ │ │ ├── run.sh │ │ │ └── run_sink.sh │ │ ├── README │ │ └── makeDisk.py │ ├── IsolatedGalaxy_potential │ │ ├── angularmomentum.py │ │ ├── getIC.sh │ │ ├── isolated_galaxy.yml │ │ ├── profilefit.py │ │ └── run.sh │ ├── IsolatedGalaxy_sink │ │ ├── README │ │ ├── getIC.sh │ │ ├── isolated_galaxy.yml │ │ └── run.sh │ ├── IsolatedGalaxy_starformation │ │ ├── README │ │ ├── SFH.py │ │ ├── getEagleCoolingTable.sh │ │ ├── getEaglePhotometryTable.sh │ │ ├── getIC.sh │ │ ├── getPS2020CoolingTables.sh │ │ ├── getYieldTable.sh │ │ ├── isolated_galaxy.yml │ │ ├── plotSolution.py │ │ └── run.sh │ └── README ├── IsolateddSph │ ├── IsolateddSph_core │ │ ├── README │ │ ├── params.yml │ │ └── run.sh │ ├── IsolateddSph_cups │ │ ├── README │ │ ├── params.yml │ │ └── run.sh │ └── README ├── Makefile.am ├── PMillennium │ ├── PMillennium-1536 │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ └── p-mill-1536.yml │ ├── PMillennium-3072 │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ └── p-mill-3072.yml │ ├── PMillennium-384 │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ └── p-mill-384.yml │ ├── PMillennium-768 │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ └── p-mill-768.yml │ └── README ├── Planetary │ ├── DemoImpact │ │ ├── README.md │ │ ├── demo_impact_n50.yml │ │ ├── getICs.sh │ │ ├── plot_snapshots.py │ │ └── run.sh │ ├── DemoImpactInitCond │ │ ├── README.md │ │ ├── demo_impactor_n50.yml │ │ ├── demo_impactor_n60.yml │ │ ├── demo_impactor_n70.yml │ │ ├── demo_target_n50.yml │ │ ├── demo_target_n60.yml │ │ ├── demo_target_n70.yml │ │ ├── make_impact_init_cond.py │ │ ├── make_init_cond.py │ │ ├── plot_profiles.py │ │ ├── plot_snapshots.py │ │ └── run.sh │ ├── EarthImpact │ │ └── README.md │ ├── EoSTables │ │ └── get_eos_tables.sh │ ├── EvrardCollapse_3D │ │ ├── README.md │ │ ├── evrard.yml │ │ ├── makeIC.py │ │ └── run.sh │ ├── JupiterLikePlanet │ │ ├── demo_target_n70.yml │ │ ├── make_init_cond.py │ │ ├── plot_profiles.py │ │ ├── plot_snapshots.py │ │ └── run.sh │ ├── KelvinHelmholtz_EarthLike_3D │ │ ├── README.md │ │ ├── kelvin_helmholtz.yml │ │ ├── makeIC.py │ │ ├── plotModeGrowth.py │ │ ├── plotSnapshots.py │ │ └── run.sh │ ├── KelvinHelmholtz_IdealGas_3D │ │ ├── README.md │ │ ├── kelvin_helmholtz.yml │ │ ├── makeIC.py │ │ ├── plotModeGrowth.py │ │ ├── plotSnapshots.py │ │ └── run.sh │ ├── KelvinHelmholtz_IdealGas_LargeDensityContrast_3D │ │ ├── README.md │ │ ├── kelvin_helmholtz.yml │ │ ├── makeIC.py │ │ ├── plotModeGrowth.py │ │ ├── plotSnapshots.py │ │ └── run.sh │ ├── KelvinHelmholtz_IdealGas_Smooth_3D │ │ ├── README.md │ │ ├── kelvin_helmholtz.yml │ │ ├── makeIC.py │ │ ├── plotModeGrowth.py │ │ ├── plotSnapshots.py │ │ └── run.sh │ ├── KelvinHelmholtz_JupiterLike_3D │ │ ├── README.md │ │ ├── kelvin_helmholtz.yml │ │ ├── makeIC.py │ │ ├── plotModeGrowth.py │ │ ├── plotSnapshots.py │ │ └── run.sh │ ├── RayleighTaylor_EarthLike_3D │ │ ├── README.md │ │ ├── makeIC.py │ │ ├── plotSnapshots.py │ │ ├── rayleigh_taylor.yml │ │ └── run.sh │ ├── RayleighTaylor_IdealGas_3D │ │ ├── README.md │ │ ├── makeIC.py │ │ ├── plotSnapshots.py │ │ ├── rayleigh_taylor.yml │ │ └── run.sh │ ├── RayleighTaylor_JupiterLike_3D │ │ ├── README.md │ │ ├── makeIC.py │ │ ├── plotSnapshots.py │ │ ├── rayleigh_taylor.yml │ │ └── run.sh │ ├── SodShock_3D │ │ ├── README.md │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── sodShock.yml │ └── SquareTest_3D │ │ ├── README.md │ │ ├── makeICEqualMass.py │ │ ├── makeICEqualSpacing.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ ├── square_equal_mass.yml │ │ └── square_equal_spacing.yml ├── QuickLymanAlpha │ ├── L050N0752 │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── qla_50.yml │ │ └── run.sh │ ├── getPloeckingerTable.sh │ └── getWiersmaTable.sh ├── RadiativeTransferTests │ ├── AdvectionDifferentTimeStepSizes_1D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_advection1D.yml │ │ └── run.sh │ ├── Advection_1D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_advection1D.yml │ │ └── run.sh │ ├── Advection_2D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── plotSolutionScatter.py │ │ ├── rt_advection2D.yml │ │ └── run.sh │ ├── CollidingBeams_1D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotEnergies.py │ │ ├── plotSolution.py │ │ ├── rt_collision1D.yml │ │ └── run.sh │ ├── CollidingBeams_2D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotEnergies.py │ │ ├── plotSolution.py │ │ ├── rt_collision2D.yml │ │ └── run.sh │ ├── CoolingTest │ │ ├── README │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_cooling_test.yml │ │ └── run.sh │ ├── CosmoAdvection_1D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotEnergy.py │ │ ├── plotSolution.py │ │ ├── rt_advection1D_high_redshift.yml │ │ ├── rt_advection1D_low_redshift.yml │ │ ├── rt_advection1D_medium_redshift.yml │ │ ├── run.sh │ │ ├── snapshot_times_high_redshift │ │ ├── snapshot_times_low_redshift │ │ └── snapshot_times_medium_redshift │ ├── CosmoAdvection_2D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotEnergy.py │ │ ├── plotSolution.py │ │ ├── rt_advection2D_high_redshift.yml │ │ ├── rt_advection2D_low_redshift.yml │ │ ├── rt_advection2D_medium_redshift.yml │ │ ├── run.sh │ │ ├── snapshot_times_high_redshift │ │ ├── snapshot_times_low_redshift │ │ └── snapshot_times_medium_redshift │ ├── CosmoCoolingTest │ │ ├── README │ │ ├── getReference.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_cooling_test.yml │ │ └── run.sh │ ├── CosmoHeatingTest │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_heating_test.yml │ │ └── run.sh │ ├── CosmoPropagationTest_3D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makePropagationTestIC.py │ │ ├── plotPhotonPropagationCheck.py │ │ ├── propagationTest-3D.yml │ │ ├── runPropagationTest.sh │ │ ├── snapshot_times_low_redshift │ │ └── stromgren_plotting_tools.py │ ├── CosmoUniformBox_3D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_uniform3D_high_redshift.yml │ │ ├── rt_uniform3D_low_redshift.yml │ │ ├── rt_uniform3D_medium_redshift.yml │ │ ├── run.sh │ │ ├── snapshot_times_high_redshift │ │ ├── snapshot_times_low_redshift │ │ └── snapshot_times_medium_redshift │ ├── HeatingTest │ │ ├── README │ │ ├── generate_output_times.py │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── rt_heating_test.yml │ │ ├── run.sh │ │ └── snaplist.txt │ ├── IonMassFractionAdvectionTest_2D │ │ ├── README │ │ ├── advect_ions.yml │ │ ├── advect_ions_cosmo.yml │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotIonization.py │ │ ├── run.sh │ │ ├── runCosmo.sh │ │ ├── snapshot_times_high_redshift │ │ └── testIonization.py │ ├── IonizationEquilibriumICSetupTest │ │ ├── README │ │ ├── getReference.sh │ │ ├── ion_equil.yml │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ └── run.sh │ ├── RandomizedBox_3D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotRadiationProjection.py │ │ ├── randomized-rt.yml │ │ └── run.sh │ ├── StromgrenSphere_2D │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── makePropagationTestIC.py │ │ ├── makemovie.sh │ │ ├── plotPhotonPropagationCheck.py │ │ ├── plotRadiationProjection.py │ │ ├── plotSolution.py │ │ ├── propagationTest-2D.yml │ │ ├── run.sh │ │ ├── runPropagationTest.sh │ │ └── stromgrenSphere-2D.yml │ ├── StromgrenSphere_3D │ │ ├── README │ │ ├── data │ │ │ ├── README │ │ │ ├── TTT1D_Stromgren100Myr.txt │ │ │ ├── TTT1D_Stromgren100Myr_HHe.txt │ │ │ ├── xHIITT1D_Stromgren100Myr_HHe.txt │ │ │ ├── xHITT1D_Stromgren100Myr_HHe.txt │ │ │ ├── xHeIIITT1D_Stromgren100Myr_HHe.txt │ │ │ ├── xHeIITT1D_Stromgren100Myr_HHe.txt │ │ │ ├── xHeITT1D_Stromgren100Myr_HHe.txt │ │ │ └── xTT1D_Stromgren100Myr.txt │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── makeIC_HHe.py │ │ ├── makePropagationTestIC.py │ │ ├── plotPhotonPropagationCheck.py │ │ ├── plotRadiationProjection.py │ │ ├── plotSolution.py │ │ ├── plotStromgren3DMFCheck.py │ │ ├── plotStromgren3DMFHHeCheck.py │ │ ├── plotStromgren3DsinglebinCheck.py │ │ ├── propagationTest-3D.yml │ │ ├── run.sh │ │ ├── runPropagationTest.sh │ │ ├── run_MF.sh │ │ ├── run_MFHHe.sh │ │ ├── run_singlebin.sh │ │ ├── stromgrenSphere-3D-MF.yml │ │ ├── stromgrenSphere-3D-MFHHe.yml │ │ ├── stromgrenSphere-3D-singlebin.yml │ │ ├── stromgrenSphere-3D.yml │ │ └── stromgren_plotting_tools.py │ └── UniformBox_3D │ │ ├── README │ │ ├── makeIC.py │ │ ├── plotRadiationProjection.py │ │ ├── rt_sanity_checks-GEAR.py │ │ ├── rt_sanity_checks.py │ │ ├── rt_uniform_box_checks-GEAR.py │ │ ├── rt_uniform_box_checks.py │ │ ├── run.sh │ │ ├── swift_rt_GEAR_io.py │ │ ├── swift_rt_debug_io.py │ │ └── uniform_rt_timestep_output_sync.yml ├── SantaBarbara │ ├── SantaBarbara-128 │ │ ├── README │ │ ├── getIC.sh │ │ ├── run.sh │ │ └── santa_barbara.yml │ └── SantaBarbara-256 │ │ ├── README │ │ ├── getIC.sh │ │ ├── makeImage.py │ │ ├── make_plots.sh │ │ ├── plotSmoothingLength.py │ │ ├── plotSolution.py │ │ ├── plotTempEvolution.py │ │ ├── rhoTHaloComparison.py │ │ ├── rhoTPlot.py │ │ ├── run.sh │ │ ├── run_velociraptor.sh │ │ ├── santa_barbara.yml │ │ └── velociraptor_cfg.cfg ├── SinkParticles │ ├── HomogeneousBox │ │ ├── README │ │ ├── getChemistryTable.sh │ │ ├── getDebuggingICs.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── makeIC.py │ │ ├── params.yml │ │ ├── params_debug.yml │ │ ├── plot_gas_density.py │ │ ├── rhoTPlot.py │ │ └── run.sh │ ├── HomogeneousBoxSinkParticles │ │ ├── README │ │ ├── getChemistryTable.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── makeIC.py │ │ ├── mpi_run.sh │ │ ├── params.yml │ │ └── run.sh │ ├── IsolatedGalaxy_multi_component_GEAR │ ├── IsolatedGalaxy_sink │ ├── PlummerSphere │ │ ├── README │ │ ├── getChemistryTable.sh │ │ ├── getGrackleCoolingTable.sh │ │ ├── params.yml │ │ └── run.sh │ └── SingleSink │ │ ├── README │ │ ├── make_sink_ic.py │ │ ├── make_test_plots.py │ │ └── params.yml ├── SmallCosmoVolume │ ├── SmallCosmoVolume_DM │ │ ├── Gadget2 │ │ │ ├── README │ │ │ └── small_cosmo_volume_dm.param │ │ ├── README │ │ ├── csds_analysis.py │ │ ├── getIC.sh │ │ ├── plotProjection.py │ │ ├── run.sh │ │ ├── run_csds.sh │ │ ├── small_cosmo_volume_dm.yml │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── SmallCosmoVolume_Snipshots │ │ ├── README │ │ ├── getIC.sh │ │ ├── output_list.txt │ │ ├── run.sh │ │ ├── select_output.yml │ │ └── small_cosmo_volume.yml │ ├── SmallCosmoVolume_VELOCIraptor │ │ ├── README │ │ ├── getHMF.py │ │ ├── getIC.sh │ │ ├── haloevol.py │ │ ├── run.sh │ │ ├── small_cosmo_volume.yml │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ ├── SmallCosmoVolume_cooling │ │ ├── README │ │ ├── getCoolingTables.sh │ │ ├── getIC.sh │ │ ├── plotRhoT.py │ │ ├── plotTempEvolution.py │ │ ├── run.sh │ │ └── small_cosmo_volume.yml │ ├── SmallCosmoVolume_hydro │ │ ├── README │ │ ├── getIC.sh │ │ ├── plotProjection.py │ │ ├── plotTempEvolution.py │ │ ├── run.sh │ │ ├── small_cosmo_volume.yml │ │ └── vrconfig_3dfof_subhalos_SO_hydro.cfg │ └── SmallCosmoVolume_lightcone │ │ ├── README │ │ ├── getCoolingTables.sh │ │ ├── getEaglePhotometryTable.sh │ │ ├── getEagleYieldTable.sh │ │ ├── getIC.sh │ │ ├── getPS2020CoolingTables.sh │ │ ├── getXrayTables.sh │ │ ├── map_types.txt │ │ ├── plot_healpix_map.py │ │ ├── read_lightcone.py │ │ ├── run.sh │ │ ├── shell_redshifts.txt │ │ └── small_cosmo_volume.yml ├── SubgridTests │ ├── BlackHoleSwallowing │ │ ├── check_masses.py │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── swallowing.yml │ │ └── swallowing_mpi.yml │ ├── CosmologicalStellarEvolution │ │ ├── README │ │ ├── check_stellar_evolution.py │ │ ├── getEaglePhotometryTable.sh │ │ ├── getEagleYieldTable.sh │ │ ├── getGlass.sh │ │ ├── getSolutions.sh │ │ ├── makeIC.py │ │ ├── plot_box_evolution.py │ │ ├── plot_particle_evolution.py │ │ ├── run.sh │ │ └── stellar_evolution.yml │ ├── ParticleSplitting │ │ ├── makeIC.py │ │ ├── particle_splitting.yml │ │ ├── plotSolution.py │ │ └── run.sh │ ├── PressureFloor │ │ ├── README │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotDensity.py │ │ ├── pressureFloor.yml │ │ └── run.sh │ ├── SmoothedMetallicity │ │ ├── getGlass.sh │ │ ├── makeIC.py │ │ ├── plotSolution.py │ │ ├── run.sh │ │ └── smoothed_metallicity.yml │ └── StellarEvolution │ │ ├── README │ │ ├── check_stellar_evolution.py │ │ ├── getEaglePhotometryTable.sh │ │ ├── getEagleYieldTable.sh │ │ ├── getGlass.sh │ │ ├── getSolutions.sh │ │ ├── makeIC.py │ │ ├── plot_box_evolution.py │ │ ├── plot_particle_evolution.py │ │ ├── run.sh │ │ └── stellar_evolution.yml ├── nIFTyCluster │ └── Baryonic │ │ ├── README │ │ ├── clean.sh │ │ ├── convert_to_swift.py │ │ ├── create_ics.sh │ │ ├── data │ │ ├── README │ │ ├── S │ │ │ ├── AREPO.csv │ │ │ ├── G2-anarchy.csv │ │ │ └── G3-music.csv │ │ ├── kT │ │ │ ├── AREPO.csv │ │ │ ├── G2-anarchy.csv │ │ │ └── G3-music.csv │ │ └── rho_gas │ │ │ ├── AREPO.csv │ │ │ ├── G2-anarchy.csv │ │ │ └── G3-music.csv │ │ ├── getIC.sh │ │ ├── nifty.yml │ │ ├── plotSolution.py │ │ ├── run.sh │ │ ├── run_vr_swift.sh │ │ ├── setup.sh │ │ └── vrconfig_swift.cfg └── parameter_example.yml ├── format.sh ├── format_python.sh ├── m4 ├── ax_append_flag.m4 ├── ax_asm_arm_cntvct.m4 ├── ax_asm_arm_pmccntr.m4 ├── ax_cc_maxopt.m4 ├── ax_cflags_warn_all.m4 ├── ax_check_compile_flag.m4 ├── ax_check_enable_debug.m4 ├── ax_compare_version.m4 ├── ax_compiler_vendor.m4 ├── ax_compiler_version.m4 ├── ax_ext.m4 ├── ax_func_posix_memalign.m4 ├── ax_gcc_archflag.m4 ├── ax_gcc_x86_avx_xgetbv.m4 ├── ax_gcc_x86_cpuid.m4 ├── ax_lib_hdf5.m4 ├── ax_mpi.m4 ├── ax_openmp.m4 ├── ax_prog_doxygen.m4 ├── ax_pthread.m4 ├── ax_require_defined.m4 └── gv_find_library.m4 ├── src ├── Makefile.am ├── accumulate.h ├── active.h ├── adaptive_softening.h ├── adaptive_softening_iact.h ├── adaptive_softening_struct.h ├── adiabatic_index.h ├── align.h ├── approx_math.h ├── atomic.h ├── barrier.h ├── binomial.h ├── black_holes.h ├── black_holes │ ├── Default │ │ ├── black_holes.h │ │ ├── black_holes_debug.h │ │ ├── black_holes_iact.h │ │ ├── black_holes_io.h │ │ ├── black_holes_part.h │ │ ├── black_holes_properties.h │ │ └── black_holes_struct.h │ ├── EAGLE │ │ ├── black_holes.h │ │ ├── black_holes_debug.h │ │ ├── black_holes_iact.h │ │ ├── black_holes_io.h │ │ ├── black_holes_parameters.h │ │ ├── black_holes_part.h │ │ ├── black_holes_properties.h │ │ └── black_holes_struct.h │ └── SPIN_JET │ │ ├── black_holes.h │ │ ├── black_holes_debug.h │ │ ├── black_holes_iact.h │ │ ├── black_holes_io.h │ │ ├── black_holes_parameters.h │ │ ├── black_holes_part.h │ │ ├── black_holes_properties.h │ │ ├── black_holes_spin.h │ │ └── black_holes_struct.h ├── black_holes_debug.h ├── black_holes_iact.h ├── black_holes_io.h ├── black_holes_properties.h ├── black_holes_struct.h ├── cache.h ├── cbrt.h ├── cell.c ├── cell.h ├── cell_black_holes.h ├── cell_convert_part.c ├── cell_drift.c ├── cell_grav.h ├── cell_grid.c ├── cell_grid.h ├── cell_hydro.h ├── cell_lock.c ├── cell_pack.c ├── cell_rt.h ├── cell_sinks.h ├── cell_split.c ├── cell_stars.h ├── cell_unskip.c ├── chemistry.c ├── chemistry.h ├── chemistry │ ├── AGORA │ │ ├── chemistry.h │ │ ├── chemistry_additions.h │ │ ├── chemistry_csds.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h │ ├── EAGLE │ │ ├── chemistry.h │ │ ├── chemistry_additions.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h │ ├── GEAR │ │ ├── chemistry.h │ │ ├── chemistry_additions.h │ │ ├── chemistry_csds.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h │ ├── GEAR_DIFFUSION │ │ ├── chemistry.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h │ ├── QLA │ │ ├── chemistry.h │ │ ├── chemistry_additions.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h │ └── none │ │ ├── chemistry.h │ │ ├── chemistry_additions.h │ │ ├── chemistry_csds.h │ │ ├── chemistry_debug.h │ │ ├── chemistry_iact.h │ │ ├── chemistry_io.h │ │ └── chemistry_struct.h ├── chemistry_additions.h ├── chemistry_csds.h ├── chemistry_debug.h ├── chemistry_io.h ├── chemistry_struct.h ├── clocks.c ├── clocks.h ├── collectgroup.c ├── collectgroup.h ├── common_io.c ├── common_io.h ├── common_io_cells.c ├── common_io_copy.c ├── common_io_fields.c ├── const.h ├── cooling.c ├── cooling.h ├── cooling │ ├── EAGLE │ │ ├── cooling.c │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ ├── cooling_rates.h │ │ ├── cooling_struct.h │ │ ├── cooling_tables.c │ │ ├── cooling_tables.h │ │ ├── interpolate.h │ │ └── newton_cooling.c │ ├── PS2020 │ │ ├── cooling.c │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ ├── cooling_rates.h │ │ ├── cooling_struct.h │ │ ├── cooling_subgrid.h │ │ ├── cooling_tables.c │ │ ├── cooling_tables.h │ │ └── interpolate.h │ ├── QLA │ │ ├── cooling.c │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ ├── cooling_rates.h │ │ ├── cooling_struct.h │ │ ├── cooling_tables.c │ │ ├── cooling_tables.h │ │ └── interpolate.h │ ├── QLA_EAGLE │ │ ├── cooling.c │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ ├── cooling_rates.h │ │ ├── cooling_struct.h │ │ ├── cooling_tables.c │ │ ├── cooling_tables.h │ │ └── interpolate.h │ ├── const_du │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ └── cooling_struct.h │ ├── const_lambda │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ └── cooling_struct.h │ ├── grackle │ │ ├── cooling.c │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ └── cooling_struct.h │ └── none │ │ ├── cooling.h │ │ ├── cooling_debug.h │ │ ├── cooling_io.h │ │ ├── cooling_properties.h │ │ └── cooling_struct.h ├── cooling_debug.h ├── cooling_io.h ├── cooling_properties.h ├── cooling_struct.h ├── cosmology.c ├── cosmology.h ├── csds.c ├── csds.h ├── csds_io.c ├── csds_io.h ├── cycle.h ├── debug.c ├── debug.h ├── dimension.h ├── distributed_io.c ├── distributed_io.h ├── drift.h ├── engine.c ├── engine.h ├── engine_collect_end_of_step.c ├── engine_config.c ├── engine_drift.c ├── engine_fof.c ├── engine_io.c ├── engine_maketasks.c ├── engine_proxy.c ├── engine_redistribute.c ├── engine_split_particles.c ├── engine_strays.c ├── engine_unskip.c ├── entropy_floor.h ├── entropy_floor │ ├── EAGLE │ │ ├── entropy_floor.c │ │ └── entropy_floor.h │ ├── QLA │ │ └── entropy_floor.h │ └── none │ │ └── entropy_floor.h ├── equation_of_state.c ├── equation_of_state.h ├── equation_of_state │ ├── barotropic │ │ └── equation_of_state.h │ ├── continuous_barotropic │ │ └── equation_of_state.h │ ├── ideal_gas │ │ └── equation_of_state.h │ ├── isothermal │ │ └── equation_of_state.h │ └── planetary │ │ ├── equation_of_state.h │ │ ├── get_eos_tables.sh │ │ ├── hm80.h │ │ ├── ideal_gas.h │ │ ├── sesame.h │ │ └── tillotson.h ├── error.h ├── exchange_structs.c ├── exchange_structs.h ├── exp.h ├── exp10.h ├── extra_io.h ├── extra_io │ └── EAGLE │ │ ├── extra.h │ │ ├── extra_io.h │ │ └── extra_lightcone_map_types.c ├── feedback.h ├── feedback │ ├── AGORA │ │ ├── feedback.c │ │ ├── feedback.h │ │ ├── feedback_debug.h │ │ ├── feedback_iact.h │ │ ├── feedback_properties.h │ │ └── feedback_struct.h │ ├── EAGLE │ │ ├── enrichment.h │ │ ├── imf.h │ │ ├── interpolate.h │ │ └── yield_tables.h │ ├── EAGLE_kinetic │ │ ├── feedback.c │ │ ├── feedback.h │ │ ├── feedback_debug.h │ │ ├── feedback_iact.h │ │ ├── feedback_properties.h │ │ └── feedback_struct.h │ ├── EAGLE_thermal │ │ ├── feedback.c │ │ ├── feedback.h │ │ ├── feedback_debug.h │ │ ├── feedback_iact.h │ │ ├── feedback_properties.h │ │ └── feedback_struct.h │ ├── GEAR │ │ ├── feedback.c │ │ ├── feedback.h │ │ ├── feedback_common.c │ │ ├── feedback_common.h │ │ ├── feedback_debug.h │ │ ├── feedback_iact.h │ │ ├── feedback_properties.h │ │ ├── feedback_struct.h │ │ ├── hdf5_functions.h │ │ ├── initial_mass_function.c │ │ ├── initial_mass_function.h │ │ ├── interpolation.h │ │ ├── lifetime.h │ │ ├── stellar_evolution.c │ │ ├── stellar_evolution.h │ │ ├── stellar_evolution_struct.h │ │ ├── supernovae_ia.c │ │ ├── supernovae_ia.h │ │ ├── supernovae_ii.c │ │ └── supernovae_ii.h │ └── none │ │ ├── feedback.h │ │ ├── feedback_debug.h │ │ ├── feedback_iact.h │ │ ├── feedback_properties.h │ │ └── feedback_struct.h ├── feedback_debug.h ├── feedback_iact.h ├── feedback_new_stars.h ├── feedback_properties.h ├── feedback_struct.h ├── fof.c ├── fof.h ├── fof_catalogue_io.c ├── fof_catalogue_io.h ├── fof_io.h ├── fof_struct.h ├── forcing.c ├── forcing.h ├── forcing │ ├── ABC_flow │ │ └── forcing.h │ ├── boundary_particles │ │ └── forcing.h │ ├── none │ │ └── forcing.h │ ├── roberts_flow │ │ └── forcing.h │ └── roberts_flow_acceleration │ │ └── forcing.h ├── fvpm_geometry.h ├── fvpm_geometry │ ├── Gizmo │ │ ├── MFM │ │ │ └── fvpm_geometry.h │ │ ├── MFV │ │ │ └── fvpm_geometry.h │ │ ├── fvpm_geometry.h │ │ └── fvpm_geometry_struct.h │ └── None │ │ ├── fvpm_geometry.h │ │ └── fvpm_geometry_struct.h ├── fvpm_geometry_struct.h ├── ghost_stats.c ├── ghost_stats.h ├── gravity.c ├── gravity.h ├── gravity │ ├── Default │ │ ├── gravity.h │ │ ├── gravity_debug.h │ │ ├── gravity_iact.h │ │ ├── gravity_io.h │ │ └── gravity_part.h │ └── MultiSoftening │ │ ├── gravity.h │ │ ├── gravity_csds.h │ │ ├── gravity_debug.h │ │ ├── gravity_iact.h │ │ ├── gravity_io.h │ │ └── gravity_part.h ├── gravity_cache.h ├── gravity_csds.h ├── gravity_derivatives.h ├── gravity_iact.h ├── gravity_io.h ├── gravity_properties.c ├── gravity_properties.h ├── gravity_softened_derivatives.h ├── hashmap.c ├── hashmap.h ├── hdf5_object_to_blob.c ├── hdf5_object_to_blob.h ├── hydro.c ├── hydro.h ├── hydro │ ├── AnarchyPU │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── Gadget2 │ │ ├── hydro.h │ │ ├── hydro_csds.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── Gasoline │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── Gizmo │ │ ├── MFM │ │ │ ├── hydro_debug.h │ │ │ ├── hydro_flux.h │ │ │ ├── hydro_part.h │ │ │ └── hydro_velocities.h │ │ ├── MFV │ │ │ ├── hydro_debug.h │ │ │ ├── hydro_flux.h │ │ │ ├── hydro_part.h │ │ │ └── hydro_velocities.h │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_flux.h │ │ ├── hydro_getters.h │ │ ├── hydro_gradients.h │ │ ├── hydro_gradients_gizmo.h │ │ ├── hydro_gradients_sph.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_lloyd.h │ │ ├── hydro_parameters.h │ │ ├── hydro_part.h │ │ ├── hydro_setters.h │ │ ├── hydro_slope_limiters.h │ │ ├── hydro_slope_limiters_cell.h │ │ ├── hydro_slope_limiters_face.h │ │ ├── hydro_unphysical.h │ │ └── hydro_velocities.h │ ├── Minimal │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── None │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── Phantom │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── Planetary │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── PressureEnergy │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── PressureEnergyMorrisMonaghanAV │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── PressureEntropy │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ ├── REMIX │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_kernels.h │ │ ├── hydro_parameters.h │ │ ├── hydro_part.h │ │ └── hydro_visc_difn.h │ ├── SPHENIX │ │ ├── hydro.h │ │ ├── hydro_csds.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h │ └── Shadowswift │ │ ├── hydro.h │ │ ├── hydro_debug.h │ │ ├── hydro_iact.h │ │ ├── hydro_io.h │ │ ├── hydro_parameters.h │ │ └── hydro_part.h ├── hydro_csds.h ├── hydro_io.h ├── hydro_parameters.h ├── hydro_properties.c ├── hydro_properties.h ├── hydro_space.c ├── hydro_space.h ├── ic_info.c ├── ic_info.h ├── inline.h ├── integer_power.h ├── io_compression.c ├── io_compression.h ├── io_properties.h ├── kernel_gravity.h ├── kernel_hydro.c ├── kernel_hydro.h ├── kernel_long_gravity.h ├── kick.h ├── lightcone │ ├── healpix_util.c │ ├── healpix_util.h │ ├── lightcone.c │ ├── lightcone.h │ ├── lightcone_array.c │ ├── lightcone_array.h │ ├── lightcone_crossing.h │ ├── lightcone_map.c │ ├── lightcone_map.h │ ├── lightcone_map_types.c │ ├── lightcone_map_types.h │ ├── lightcone_particle_io.c │ ├── lightcone_particle_io.h │ ├── lightcone_replications.c │ ├── lightcone_replications.h │ ├── lightcone_shell.c │ ├── lightcone_shell.h │ ├── pixel_index.h │ ├── projected_kernel.c │ └── projected_kernel.h ├── line_of_sight.c ├── line_of_sight.h ├── lock.h ├── log.h ├── map.c ├── map.h ├── memswap.h ├── memuse.c ├── memuse.h ├── memuse_rnodes.c ├── memuse_rnodes.h ├── mesh_gravity.c ├── mesh_gravity.h ├── mesh_gravity_mpi.c ├── mesh_gravity_mpi.h ├── mesh_gravity_patch.c ├── mesh_gravity_patch.h ├── mesh_gravity_sort.c ├── mesh_gravity_sort.h ├── mhd.h ├── mhd │ └── None │ │ ├── mhd.h │ │ ├── mhd_debug.h │ │ ├── mhd_iact.h │ │ ├── mhd_io.h │ │ ├── mhd_parameters.h │ │ └── mhd_struct.h ├── mhd_io.h ├── mhd_struct.h ├── minmax.h ├── mpiuse.c ├── mpiuse.h ├── multipole.c ├── multipole.h ├── multipole_accept.h ├── multipole_struct.h ├── neutrino.h ├── neutrino │ └── Default │ │ ├── fermi_dirac.c │ │ ├── fermi_dirac.h │ │ ├── neutrino.c │ │ ├── neutrino.h │ │ ├── neutrino_io.h │ │ ├── neutrino_properties.h │ │ ├── neutrino_response.c │ │ ├── neutrino_response.h │ │ └── relativity.h ├── neutrino_io.h ├── neutrino_properties.h ├── output_list.c ├── output_list.h ├── output_options.c ├── output_options.h ├── parallel_io.c ├── parallel_io.h ├── parser.c ├── parser.h ├── part.c ├── part.h ├── part_type.c ├── part_type.h ├── particle_buffer.c ├── particle_buffer.h ├── particle_splitting.h ├── particle_splitting_struct.h ├── partition.c ├── partition.h ├── partition_fixed_costs.h ├── periodic.h ├── physical_constants.c ├── physical_constants.h ├── physical_constants_cgs.h ├── potential.c ├── potential.h ├── potential │ ├── MWPotential2014 │ │ └── potential.h │ ├── constant │ │ └── potential.h │ ├── disc_patch │ │ └── potential.h │ ├── hernquist │ │ └── potential.h │ ├── hernquist_sdmh05 │ │ └── potential.h │ ├── isothermal │ │ └── potential.h │ ├── nfw │ │ └── potential.h │ ├── nfw_mn │ │ └── potential.h │ ├── none │ │ └── potential.h │ ├── point_mass │ │ └── potential.h │ ├── point_mass_softened │ │ └── potential.h │ └── sine_wave │ │ └── potential.h ├── power_spectrum.c ├── power_spectrum.h ├── pressure_floor.h ├── pressure_floor │ ├── GEAR │ │ ├── pressure_floor.h │ │ ├── pressure_floor_debug.h │ │ ├── pressure_floor_iact.h │ │ └── pressure_floor_struct.h │ └── none │ │ ├── pressure_floor.h │ │ ├── pressure_floor_debug.h │ │ ├── pressure_floor_iact.h │ │ └── pressure_floor_struct.h ├── pressure_floor_debug.h ├── pressure_floor_iact.h ├── pressure_floor_struct.h ├── profiler.c ├── profiler.h ├── proxy.c ├── proxy.h ├── queue.c ├── queue.h ├── random.h ├── rays.h ├── rays_struct.h ├── restart.c ├── restart.h ├── riemann.h ├── riemann │ ├── riemann_checks.h │ ├── riemann_exact.h │ ├── riemann_hllc.h │ ├── riemann_trrs.h │ └── riemann_vacuum.h ├── row_major_id.h ├── rt.h ├── rt │ ├── GEAR │ │ ├── rt.h │ │ ├── rt_additions.h │ │ ├── rt_blackbody.h │ │ ├── rt_debugging.h │ │ ├── rt_flux.h │ │ ├── rt_getters.h │ │ ├── rt_grackle_utils.h │ │ ├── rt_gradients.h │ │ ├── rt_iact.h │ │ ├── rt_interaction_cross_sections.c │ │ ├── rt_interaction_cross_sections.h │ │ ├── rt_interaction_rates.h │ │ ├── rt_io.h │ │ ├── rt_ionization_equilibrium.h │ │ ├── rt_parameters.h │ │ ├── rt_properties.h │ │ ├── rt_riemann_GLF.h │ │ ├── rt_riemann_HLL.h │ │ ├── rt_riemann_HLL_eigenvalues.h │ │ ├── rt_slope_limiters_cell.h │ │ ├── rt_slope_limiters_face.h │ │ ├── rt_species.h │ │ ├── rt_stellar_emission_model.h │ │ ├── rt_struct.h │ │ ├── rt_thermochemistry.h │ │ ├── rt_thermochemistry_utils.h │ │ └── rt_unphysical.h │ ├── SPHM1RT │ │ ├── rt.h │ │ ├── rt_additions.h │ │ ├── rt_cooling.c │ │ ├── rt_cooling.h │ │ ├── rt_cooling_rates.h │ │ ├── rt_getters.h │ │ ├── rt_gradients.h │ │ ├── rt_iact.h │ │ ├── rt_io.h │ │ ├── rt_parameters.h │ │ ├── rt_properties.h │ │ ├── rt_rate_equations.c │ │ ├── rt_setters.h │ │ ├── rt_species_and_elements.h │ │ ├── rt_stellar_emission_rate.h │ │ ├── rt_struct.h │ │ └── rt_unphysical.h │ ├── debug │ │ ├── rt.h │ │ ├── rt_additions.h │ │ ├── rt_debugging.h │ │ ├── rt_gradients.h │ │ ├── rt_iact.h │ │ ├── rt_io.h │ │ ├── rt_parameters.h │ │ ├── rt_properties.h │ │ └── rt_struct.h │ └── none │ │ ├── rt.h │ │ ├── rt_additions.h │ │ ├── rt_iact.h │ │ ├── rt_io.h │ │ ├── rt_parameters.h │ │ ├── rt_properties.h │ │ └── rt_struct.h ├── rt_additions.h ├── rt_io.h ├── rt_parameters.c ├── rt_parameters.h ├── rt_properties.h ├── rt_struct.h ├── runner.h ├── runner_black_holes.c ├── runner_doiact_black_holes.c ├── runner_doiact_black_holes.h ├── runner_doiact_functions_black_holes.h ├── runner_doiact_functions_hydro.h ├── runner_doiact_functions_limiter.h ├── runner_doiact_functions_sinks.h ├── runner_doiact_functions_stars.h ├── runner_doiact_grav.c ├── runner_doiact_grav.h ├── runner_doiact_hydro.c ├── runner_doiact_hydro.h ├── runner_doiact_hydro_vec.c ├── runner_doiact_hydro_vec.h ├── runner_doiact_limiter.c ├── runner_doiact_limiter.h ├── runner_doiact_nosort.h ├── runner_doiact_sinks.c ├── runner_doiact_sinks.h ├── runner_doiact_stars.c ├── runner_doiact_stars.h ├── runner_doiact_undef.h ├── runner_drift.c ├── runner_ghost.c ├── runner_main.c ├── runner_neutrino.c ├── runner_others.c ├── runner_pack.c ├── runner_recv.c ├── runner_sinks.c ├── runner_sort.c ├── runner_time_integration.c ├── scheduler.c ├── scheduler.h ├── serial_io.c ├── serial_io.h ├── shadowswift │ └── voronoi.h ├── sign.h ├── signal_velocity.h ├── sincos.h ├── single_io.c ├── single_io.h ├── sink.c ├── sink.h ├── sink │ ├── Basic │ │ ├── sink.h │ │ ├── sink_debug.h │ │ ├── sink_iact.h │ │ ├── sink_io.h │ │ ├── sink_part.h │ │ ├── sink_properties.h │ │ └── sink_struct.h │ ├── Default │ │ ├── sink.h │ │ ├── sink_debug.h │ │ ├── sink_iact.h │ │ ├── sink_io.h │ │ ├── sink_part.h │ │ ├── sink_properties.h │ │ └── sink_struct.h │ └── GEAR │ │ ├── sink.h │ │ ├── sink_debug.h │ │ ├── sink_getters.h │ │ ├── sink_iact.h │ │ ├── sink_io.h │ │ ├── sink_part.h │ │ ├── sink_properties.h │ │ ├── sink_setters.h │ │ └── sink_struct.h ├── sink_debug.h ├── sink_iact.h ├── sink_io.h ├── sink_properties.h ├── sink_struct.h ├── sort_part.h ├── space.c ├── space.h ├── space_cell_index.c ├── space_extras.c ├── space_first_init.c ├── space_getsid.h ├── space_init.c ├── space_rebuild.c ├── space_recycle.c ├── space_regrid.c ├── space_sort.c ├── space_split.c ├── space_unique_id.c ├── space_unique_id.h ├── star_formation.c ├── star_formation.h ├── star_formation │ ├── EAGLE │ │ ├── star_formation.h │ │ ├── star_formation_debug.h │ │ ├── star_formation_iact.h │ │ ├── star_formation_io.h │ │ ├── star_formation_logger.h │ │ ├── star_formation_logger_struct.h │ │ └── star_formation_struct.h │ ├── GEAR │ │ ├── star_formation.h │ │ ├── star_formation_csds.h │ │ ├── star_formation_debug.h │ │ ├── star_formation_iact.h │ │ ├── star_formation_io.h │ │ ├── star_formation_logger.h │ │ ├── star_formation_logger_struct.h │ │ ├── star_formation_setters.h │ │ └── star_formation_struct.h │ ├── QLA │ │ ├── star_formation.h │ │ ├── star_formation_debug.h │ │ ├── star_formation_iact.h │ │ ├── star_formation_io.h │ │ └── star_formation_struct.h │ └── none │ │ ├── star_formation.h │ │ ├── star_formation_csds.h │ │ ├── star_formation_debug.h │ │ ├── star_formation_iact.h │ │ ├── star_formation_io.h │ │ ├── star_formation_logger.h │ │ ├── star_formation_logger_struct.h │ │ └── star_formation_struct.h ├── star_formation_csds.h ├── star_formation_debug.h ├── star_formation_iact.h ├── star_formation_io.h ├── star_formation_logger.h ├── star_formation_logger_struct.h ├── star_formation_struct.h ├── stars.c ├── stars.h ├── stars │ ├── Basic │ │ ├── stars.h │ │ ├── stars_csds.h │ │ ├── stars_debug.h │ │ ├── stars_iact.h │ │ ├── stars_io.h │ │ └── stars_part.h │ ├── EAGLE │ │ ├── stars.h │ │ ├── stars_debug.h │ │ ├── stars_iact.h │ │ ├── stars_io.h │ │ └── stars_part.h │ ├── GEAR │ │ ├── stars.h │ │ ├── stars_csds.h │ │ ├── stars_debug.h │ │ ├── stars_iact.h │ │ ├── stars_io.h │ │ ├── stars_part.h │ │ └── stars_stellar_type.h │ └── None │ │ ├── stars.h │ │ ├── stars_debug.h │ │ ├── stars_iact.h │ │ ├── stars_io.h │ │ └── stars_part.h ├── stars_csds.h ├── stars_io.h ├── statistics.c ├── statistics.h ├── swift.h ├── swift_intrinsics.h ├── swift_lustre_api.c ├── swift_lustre_api.h ├── swift_velociraptor_part.h ├── symmetric_matrix.h ├── task.c ├── task.h ├── threadpool.c ├── threadpool.h ├── timeline.h ├── timers.c ├── timers.h ├── timestep.h ├── timestep_limiter.h ├── timestep_limiter_iact.h ├── timestep_limiter_struct.h ├── timestep_sync.h ├── timestep_sync_part.h ├── tools.c ├── tools.h ├── tracers.h ├── tracers │ ├── EAGLE │ │ ├── tracers.h │ │ ├── tracers_debug.h │ │ ├── tracers_io.h │ │ └── tracers_struct.h │ └── none │ │ ├── tracers.h │ │ ├── tracers_debug.h │ │ ├── tracers_io.h │ │ └── tracers_struct.h ├── tracers_debug.h ├── tracers_io.h ├── tracers_struct.h ├── tracers_triggers.h ├── units.c ├── units.h ├── utilities.h ├── vector.h ├── vector_power.h ├── velociraptor_interface.c ├── velociraptor_interface.h ├── velociraptor_io.h ├── velociraptor_struct.h ├── version.c ├── version.h ├── version_string.h.in ├── xmf.c └── xmf.h ├── swift.c ├── swift_fof.c ├── tests ├── Makefile.am ├── csds.yml ├── difffloat.py ├── fft_params.yml ├── makeInput.py ├── output_list_params.yml.in ├── output_list_redshift.txt ├── output_list_scale_factor.txt ├── output_list_time.txt ├── selectOutput.yml ├── selectOutputParameters.yml ├── star_tolerance_27_normal.dat ├── star_tolerance_27_perturbed.dat ├── star_tolerance_27_perturbed_h.dat ├── star_tolerance_27_perturbed_h2.dat ├── test125cells.c ├── test125cells.sh.in ├── test125cellsPerturbed.sh.in ├── test27cells.c ├── test27cells.sh.in ├── test27cellsPerturbed.sh.in ├── test27cellsStars.c ├── test27cellsStars.sh.in ├── test27cellsStarsPerturbed.sh.in ├── testActivePair.c ├── testActivePair.sh.in ├── testAdiabaticIndex.c ├── testAtomic.c ├── testCSDS.c ├── testCbrt.c ├── testComovingCooling.c ├── testCooling.c ├── testCooling.yml ├── testCosmology.c ├── testDistance.c ├── testDump.c ├── testEOS.c ├── testEOS.py ├── testEOS_plot.sh ├── testErfc.c ├── testExp.c ├── testFFT.c ├── testFeedback.c ├── testFeedback.yml ├── testFormat.sh.in ├── testGravityDerivatives.c ├── testGravitySpeed.c ├── testGreetings.c ├── testHashmap.c ├── testHydroMPIrules.c ├── testInteractions.c ├── testInteractions.sh.in ├── testKernel.c ├── testKernelGrav.c ├── testKernelLongGrav.c ├── testLog.c ├── testMaths.c ├── testMatrixInversion.c ├── testNeutrinoCosmology.c ├── testNeutrinoCosmology.dat ├── testNeutrinoCosmology.sh.in ├── testNeutrinoFermiDirac.c ├── testOutputList.c ├── testParser.c ├── testParser.sh.in ├── testParserInput.yaml ├── testPeriodicBC.c ├── testPeriodicBC.sh.in ├── testPeriodicBCPerturbed.sh.in ├── testPotentialPair.c ├── testPotentialSelf.c ├── testRandom.c ├── testRandomCone.c ├── testRandomPoisson.c ├── testRandomSpacing.c ├── testReading.c ├── testReading.sh.in ├── testRiemannExact.c ├── testRiemannHLLC.c ├── testRiemannTRRS.c ├── testSelectOutput.c ├── testSelectOutput.py ├── testSelectOutput.sh.in ├── testSymmetry.c ├── testThreadpool.c ├── testTimeIntegration.c ├── testTimeline.c ├── testUtilities.c ├── tolerance_125_normal.dat ├── tolerance_125_perturbed.dat ├── tolerance_27_normal.dat ├── tolerance_27_perturbed.dat ├── tolerance_27_perturbed_h.dat ├── tolerance_27_perturbed_h2.dat ├── tolerance_pair_active.dat ├── tolerance_pair_force_active.dat ├── tolerance_periodic_BC_normal.dat ├── tolerance_periodic_BC_perturbed.dat └── tolerance_testInteractions.dat ├── theory ├── Cooling │ ├── bibliography.bib │ ├── eagle_cooling.tex │ └── run.sh ├── Cosmology │ ├── artificialvisc.tex │ ├── bibliography.bib │ ├── coordinates.tex │ ├── cosmology_standalone.tex │ ├── flrw.tex │ ├── gizmo.tex │ ├── neutrinos.tex │ ├── operators.tex │ ├── run.sh │ └── timesteps.tex ├── Gizmo │ └── gizmo-implementation-details │ │ ├── bert.tex │ │ ├── computations.tex │ │ ├── equations.tex │ │ ├── gizmo-implementation-details.tex │ │ ├── header.tex │ │ ├── references.bib │ │ └── run.sh ├── MovingMesh │ ├── ShadowSWIFT │ │ └── implementation-details.tex │ ├── VoronoiConstruction │ │ ├── construction-level.tex │ │ ├── current-status.tex │ │ ├── figures │ │ │ ├── construction_level.tex │ │ │ └── problem.tex │ │ └── implementation-details.tex │ ├── header.tex │ └── references.bib ├── Multipoles │ ├── bibliography.bib │ ├── cells.odg │ ├── cells.pdf │ ├── exact_forces.tex │ ├── fmm_mac.tex │ ├── fmm_standalone.tex │ ├── fmm_summary.tex │ ├── generate_multipoles │ │ ├── gravity_derivatives.py │ │ ├── multipoles.py │ │ └── vector_powers.py │ ├── gravity_derivatives.tex │ ├── mesh_summary.tex │ ├── plot_derivatives.py │ ├── plot_mac_potential.py │ ├── plot_mesh.py │ ├── plot_potential.py │ ├── potential_derivatives.tex │ ├── potential_softening.tex │ ├── run.sh │ └── vector_notation.tex ├── Papers │ ├── PASC_2016 │ │ ├── Figures │ │ │ ├── Hierarchy3.pdf │ │ │ ├── Hierarchy3.svg │ │ │ ├── cosmoVolume.png │ │ │ ├── domains.png │ │ │ ├── scalingBlueGene.pdf │ │ │ ├── scalingCosma.pdf │ │ │ ├── scalingInNode.pdf │ │ │ ├── scalingSuperMUC.pdf │ │ │ ├── task_graph_cut.pdf │ │ │ └── task_graph_cut.svg │ │ ├── acmcopyright.sty │ │ ├── biblio.bib │ │ ├── pasc_paper.tex │ │ ├── run.sh │ │ └── sig-alternate-05-2015.cls │ ├── Parco_2017 │ │ ├── Figures │ │ │ ├── parts_on_axis.eps │ │ │ ├── parts_sorted.eps │ │ │ ├── read_cache_subset.eps │ │ │ └── sph.eps │ │ ├── IOS-Book-Article.cls │ │ ├── main.tex │ │ ├── references.bib │ │ └── run.sh │ ├── SIAM_2013 │ │ ├── figures │ │ │ ├── BigCosmoVolume_cosma5.pdf │ │ │ ├── CellLocking.pdf │ │ │ ├── CellLocking.svg │ │ │ ├── CosmoVolume_scaling.eps │ │ │ ├── CosmoVolume_scaling.pdf │ │ │ ├── CosmoVolume_times.eps │ │ │ ├── CosmoVolume_times.pdf │ │ │ ├── DensityForce.pdf │ │ │ ├── DensityForce.svg │ │ │ ├── Hierarchy.pdf │ │ │ ├── Hierarchy.svg │ │ │ ├── Hierarchy2.pdf │ │ │ ├── Hierarchy2.svg │ │ │ ├── Hierarchy3.pdf │ │ │ ├── Hierarchy3.svg │ │ │ ├── HierarchySorting.pdf │ │ │ ├── HierarchySorting.svg │ │ │ ├── InitialDecomp.pdf │ │ │ ├── InitialDecomp.svg │ │ │ ├── OMPScaling.pdf │ │ │ ├── OMPScaling.svg │ │ │ ├── PerturbedBox_tasks.eps │ │ │ ├── PerturbedBox_tasks.pdf │ │ │ ├── PerturbedBox_tasks.png │ │ │ ├── Queue.eps │ │ │ ├── Queue.pdf │ │ │ ├── SedovBlast_density.eps │ │ │ ├── SedovBlast_density.pdf │ │ │ ├── SedovBlast_scaling.eps │ │ │ ├── SedovBlast_scaling.pdf │ │ │ ├── SedovBlast_scaling.png │ │ │ ├── SodShock_profile.eps │ │ │ ├── SodShock_profile.pdf │ │ │ ├── SodShock_scaling.eps │ │ │ ├── SodShock_scaling.pdf │ │ │ ├── SortedInteractions.pdf │ │ │ ├── SortedInteractions.svg │ │ │ ├── SplitCell.pdf │ │ │ ├── SplitCell.svg │ │ │ ├── SplitPair.pdf │ │ │ ├── SplitPair.svg │ │ │ ├── TasksExample.pdf │ │ │ ├── TasksExample.svg │ │ │ ├── TasksExampleConflicts.pdf │ │ │ └── scaling.pdf │ │ ├── paper.tex │ │ ├── siam.bst │ │ ├── siam10.clo │ │ ├── siamltex.cls │ │ └── sph.bib │ └── SPHERIC_2013 │ │ ├── IEEEtran.cls │ │ ├── data │ │ ├── CosmoVolume_fixed.totals │ │ ├── CosmoVolume_fixed_Gadget2.totals │ │ ├── Cosmo_fixed │ │ │ ├── performance_1.dat │ │ │ ├── performance_10.dat │ │ │ ├── performance_12.dat │ │ │ ├── performance_16.dat │ │ │ ├── performance_2.dat │ │ │ ├── performance_20.dat │ │ │ ├── performance_24.dat │ │ │ ├── performance_28.dat │ │ │ ├── performance_3.dat │ │ │ ├── performance_32.dat │ │ │ ├── performance_4.dat │ │ │ ├── performance_48.dat │ │ │ ├── performance_6.dat │ │ │ └── performance_8.dat │ │ ├── SedovBlast_exact_10.dat │ │ ├── SedovBlast_exact_15.dat │ │ ├── SedovBlast_exact_20.dat │ │ ├── SedovBlast_fixed.totals │ │ ├── SedovBlast_rdf_10.dat │ │ ├── SedovBlast_rdf_15.dat │ │ ├── SedovBlast_rdf_20.dat │ │ ├── SodShock_exact_P.dat │ │ ├── SodShock_exact_rho.dat │ │ ├── SodShock_exact_v.dat │ │ ├── SodShock_fixed.totals │ │ ├── SodShock_rhox.dat │ │ ├── SodShock_scaling.eps │ │ └── count.sh │ │ ├── figures │ │ ├── mkplots.m │ │ ├── mkplots_tasks.m │ │ ├── paper.tex │ │ └── sph.bib ├── RadiativeTransfer │ ├── GEARRT │ │ ├── 1-meshless.tex │ │ ├── 2-rt-equations.tex │ │ ├── 3-rt-numerical-method.tex │ │ ├── GEARRT.tex │ │ ├── appendix.tex │ │ ├── header.tex │ │ ├── my_defines.tex │ │ ├── references.bib │ │ ├── run.sh │ │ └── tables │ │ │ ├── fitting_parameters.tex │ │ │ ├── rt_variables.tex │ │ │ └── thermochemistry_rates.tex │ └── HLLRiemannSolverEigenvalues │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── README │ │ ├── get_eigenvalues.f90 │ │ ├── plot_eigenvalues.py │ │ └── run.sh ├── SPH │ ├── Derivation │ │ └── sph_derivation.tex │ ├── EoS │ │ ├── eos.tex │ │ ├── eos_standalone.tex │ │ └── run.sh │ ├── Flavours │ │ ├── anarchy.tex │ │ ├── bibliography.bib │ │ ├── plotSoundspeed.py │ │ ├── run.sh │ │ ├── sedov_soundspeed_ratio_data.npz │ │ ├── sph_flavours.tex │ │ └── sph_flavours_standalone.tex │ ├── Kernels │ │ ├── bibliography.bib │ │ ├── kernel_definitions.tex │ │ ├── kernel_definitions_standalone.tex │ │ ├── kernels.py │ │ └── run.sh │ ├── bibliography.bib │ ├── run.sh │ └── swift_sph.tex ├── SinkParticles │ ├── ar-1col-S2O.cls │ ├── ar-style2.bst │ ├── gear_imf_sampling.tex │ ├── plot_imf_image.py │ └── run.sh ├── Star_Formation │ ├── bibliography.bib │ ├── run.sh │ ├── starformation.tex │ └── starformation_standalone.tex ├── Talks │ └── SPHERIC_2013 │ │ ├── CosmoVolume_scaling.eps │ │ ├── CosmoVolume_scaling.pdf │ │ ├── DU_W_O_med.png │ │ ├── Hierarchy2.pdf │ │ ├── Hierarchy2.svg │ │ ├── Hierarchy2_001.pdf │ │ ├── Hierarchy2_002.pdf │ │ ├── Hierarchy2_003.pdf │ │ ├── Hierarchy2_004.pdf │ │ ├── Hierarchy2_005.pdf │ │ ├── Hierarchy2_006.pdf │ │ ├── Hierarchy2_007.pdf │ │ ├── Hierarchy2_008.pdf │ │ ├── InitialDecomp.pdf │ │ ├── InitialDecomp.svg │ │ ├── InitialDecomp_001.pdf │ │ ├── InitialDecomp_002.pdf │ │ ├── InitialDecomp_003.pdf │ │ ├── InitialDecomp_004.pdf │ │ ├── InitialDecomp_task.pdf │ │ ├── MPIScaling.svg │ │ ├── MPIScaling001.pdf │ │ ├── MPIScaling002.pdf │ │ ├── MPIScaling003.pdf │ │ ├── MPIScaling004.pdf │ │ ├── MPIScaling005.pdf │ │ ├── OMPCode.svg │ │ ├── OMPCode_001.pdf │ │ ├── OMPCode_002.pdf │ │ ├── OMPCode_003.pdf │ │ ├── OMPScaling.pdf │ │ ├── OMPScaling.svg │ │ ├── OMPScaling.svg.2013_01_14_09_58_40.0.svg │ │ ├── OMPScaling001.pdf │ │ ├── OMPScaling002.pdf │ │ ├── OMPScaling003.pdf │ │ ├── Octree.pdf │ │ ├── Octree.svg │ │ ├── SPH.svg │ │ ├── SPH_001.pdf │ │ ├── SPH_002.pdf │ │ ├── SearchTree.svg │ │ ├── SearchTree_001.pdf │ │ ├── SearchTree_002.pdf │ │ ├── SearchTree_003.pdf │ │ ├── SodShock_scaling.pdf │ │ ├── SortedInteractions.pdf │ │ ├── SortedInteractions.svg │ │ ├── SplitCell.pdf │ │ ├── SplitCell.svg │ │ ├── SplitPair.pdf │ │ ├── SplitPair.svg │ │ ├── img008.pdf │ │ ├── img008b.pdf │ │ ├── img008c.pdf │ │ ├── img008d.pdf │ │ ├── img008e.pdf │ │ ├── img008e2.pdf │ │ ├── img008f.pdf │ │ ├── img008f2.pdf │ │ ├── img008g.pdf │ │ ├── img008h.pdf │ │ ├── mdcore.eps │ │ ├── mdcore.pdf │ │ ├── missfont.log │ │ ├── scaling.pdf │ │ ├── scaling_gadget.pdf │ │ ├── scaling_red.pdf │ │ ├── slides.aux │ │ ├── slides.log │ │ ├── slides.nav │ │ ├── slides.out │ │ ├── slides.pdf │ │ ├── slides.snm │ │ ├── slides.tex │ │ ├── slides.tex.bak │ │ ├── slides.toc │ │ ├── slides_handout.pdf │ │ ├── tasks_dynamic.pdf │ │ └── times.pdf └── latex │ ├── Figures │ └── Gravity │ │ └── force.py │ ├── Makefile │ └── swift.tex └── tools ├── Makefile.am ├── analyse_dump_cells.py ├── analyse_runtime.py ├── check_interactions.sh ├── check_mpireports.py ├── check_ngbs.py ├── combine_ics.py ├── convert_snapshot_to_ICs.py ├── create_perturb_file.py ├── create_virtual_snapshot.py ├── data └── cell_hierarchy.html ├── make_cell_hierarchy.py ├── match_mpireports.py ├── parallel_replicate_ICs.py ├── plot_ghost_stats.py ├── plot_gravity_checks.py ├── plot_scaling_results.py ├── plot_scaling_results_breakdown.py ├── plot_scaling_results_detailed.py ├── plot_task_dependencies.py ├── plot_task_level.py ├── process_cells ├── process_cells_helper ├── read_index_file.py ├── recover_restart_parameters.py ├── spawn_neutrinos.py ├── stylesheets ├── README └── mnras.mplstyle ├── task_plots ├── analyse_tasks.py ├── analyse_threadpool_tasks.py ├── iplot_tasks.py ├── iplot_threadpool.py ├── plot_tasks.py ├── plot_threadpool.py ├── process_plot_tasks.py ├── process_plot_tasks_MPI.py ├── process_plot_taskthreadpools ├── process_plot_taskthreadpools_helper ├── process_plot_threadpool ├── process_plot_threadpool_MPI └── swift_hardcoded_data.py ├── timed_functions.py └── update-modules /.clang-format: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SWIFTSIM/SWIFT/HEAD/.clang-format -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SWIFTSIM/SWIFT/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SWIFTSIM/SWIFT/HEAD/.gitmodules -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SWIFTSIM/SWIFT/HEAD/AUTHORS 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