├── .gitignore ├── RUN-WGCNA.Rproj ├── WGCNA_functions.R ├── coExpressionAnalysis.R ├── exprsExtimates.csv.zip ├── plots ├── eigengenBoxplot.png ├── eigengenBoxplots.pdf ├── eigengenBoxplots.png ├── modClusterPlot.pdf ├── modClusterPlot.png ├── powerPlots.pdf └── powerPlots.png ├── readme.Rmd ├── readme.html ├── readme.md └── run-wgcna.png /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | cache/* 5 | -------------------------------------------------------------------------------- /RUN-WGCNA.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/RUN-WGCNA.Rproj -------------------------------------------------------------------------------- /WGCNA_functions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/WGCNA_functions.R -------------------------------------------------------------------------------- /coExpressionAnalysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/coExpressionAnalysis.R -------------------------------------------------------------------------------- /exprsExtimates.csv.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/exprsExtimates.csv.zip -------------------------------------------------------------------------------- /plots/eigengenBoxplot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/eigengenBoxplot.png -------------------------------------------------------------------------------- /plots/eigengenBoxplots.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/eigengenBoxplots.pdf -------------------------------------------------------------------------------- /plots/eigengenBoxplots.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/eigengenBoxplots.png -------------------------------------------------------------------------------- /plots/modClusterPlot.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/modClusterPlot.pdf -------------------------------------------------------------------------------- /plots/modClusterPlot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/modClusterPlot.png -------------------------------------------------------------------------------- /plots/powerPlots.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/powerPlots.pdf -------------------------------------------------------------------------------- /plots/powerPlots.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/plots/powerPlots.png -------------------------------------------------------------------------------- /readme.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/readme.Rmd -------------------------------------------------------------------------------- /readme.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/readme.html -------------------------------------------------------------------------------- /readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/readme.md -------------------------------------------------------------------------------- /run-wgcna.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamBuckberry/RUN-WGCNA/HEAD/run-wgcna.png --------------------------------------------------------------------------------