├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R ├── allClasses.R ├── allGenerics.R ├── datasets.R ├── functions.R ├── helpers.R ├── methods.R └── ropls-package.R ├── data ├── aminoacids.csv.gz ├── cellulose.rdata ├── cornell.csv.gz ├── datalist ├── foods.csv.gz ├── linnerud.csv.gz ├── lowarp.csv.gz ├── mark.csv.gz └── sacurine.rdata ├── inst ├── CITATION ├── doc │ ├── ropls-vignette.R │ ├── ropls-vignette.Rmd │ └── ropls-vignette.html ├── extdata │ ├── sacurine_dataMatrix.tsv │ ├── sacurine_sampleMetadata.tsv │ └── sacurine_variableMetadata.tsv └── unitTests │ └── test_opls.R ├── man ├── aminoacids.Rd ├── cellulose.Rd ├── checkW4M.Rd ├── coef.Rd ├── cornell.Rd ├── fitted.Rd ├── foods.Rd ├── fromW4M.Rd ├── getLoadingMN.Rd ├── getPcaVarVn.Rd ├── getScoreMN.Rd ├── getSubsetVi.Rd ├── getSummaryDF.Rd ├── getVipVn.Rd ├── getWeightMN.Rd ├── linnerud.Rd ├── lowarp.Rd ├── mark.Rd ├── opls-class.Rd ├── opls.Rd ├── plot.Rd ├── predict.Rd ├── print.Rd ├── residuals.Rd ├── ropls-package.Rd ├── sacurine.Rd ├── show.Rd ├── strF.Rd ├── tested.Rd └── toW4M.Rd ├── ropls.Rproj ├── tests └── runTests.R └── vignettes ├── ropls-vignette.Rmd └── ropls-vignette.bib /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/NEWS -------------------------------------------------------------------------------- /R/allClasses.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/allClasses.R -------------------------------------------------------------------------------- /R/allGenerics.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/allGenerics.R -------------------------------------------------------------------------------- /R/datasets.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/datasets.R -------------------------------------------------------------------------------- /R/functions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/functions.R -------------------------------------------------------------------------------- /R/helpers.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/helpers.R -------------------------------------------------------------------------------- /R/methods.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/methods.R -------------------------------------------------------------------------------- /R/ropls-package.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/R/ropls-package.R -------------------------------------------------------------------------------- /data/aminoacids.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/aminoacids.csv.gz -------------------------------------------------------------------------------- /data/cellulose.rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/cellulose.rdata -------------------------------------------------------------------------------- /data/cornell.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/cornell.csv.gz -------------------------------------------------------------------------------- /data/datalist: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/datalist -------------------------------------------------------------------------------- /data/foods.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/foods.csv.gz -------------------------------------------------------------------------------- /data/linnerud.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/linnerud.csv.gz -------------------------------------------------------------------------------- /data/lowarp.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/lowarp.csv.gz -------------------------------------------------------------------------------- /data/mark.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/mark.csv.gz -------------------------------------------------------------------------------- /data/sacurine.rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/data/sacurine.rdata -------------------------------------------------------------------------------- /inst/CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/CITATION -------------------------------------------------------------------------------- /inst/doc/ropls-vignette.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/doc/ropls-vignette.R -------------------------------------------------------------------------------- /inst/doc/ropls-vignette.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/doc/ropls-vignette.Rmd -------------------------------------------------------------------------------- /inst/doc/ropls-vignette.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/doc/ropls-vignette.html -------------------------------------------------------------------------------- /inst/extdata/sacurine_dataMatrix.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/extdata/sacurine_dataMatrix.tsv -------------------------------------------------------------------------------- /inst/extdata/sacurine_sampleMetadata.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/extdata/sacurine_sampleMetadata.tsv -------------------------------------------------------------------------------- /inst/extdata/sacurine_variableMetadata.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/extdata/sacurine_variableMetadata.tsv -------------------------------------------------------------------------------- /inst/unitTests/test_opls.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/inst/unitTests/test_opls.R -------------------------------------------------------------------------------- /man/aminoacids.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/aminoacids.Rd -------------------------------------------------------------------------------- /man/cellulose.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/cellulose.Rd -------------------------------------------------------------------------------- /man/checkW4M.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/checkW4M.Rd -------------------------------------------------------------------------------- /man/coef.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/coef.Rd -------------------------------------------------------------------------------- /man/cornell.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/cornell.Rd -------------------------------------------------------------------------------- /man/fitted.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/fitted.Rd -------------------------------------------------------------------------------- /man/foods.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/foods.Rd -------------------------------------------------------------------------------- /man/fromW4M.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/fromW4M.Rd -------------------------------------------------------------------------------- /man/getLoadingMN.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getLoadingMN.Rd -------------------------------------------------------------------------------- /man/getPcaVarVn.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getPcaVarVn.Rd -------------------------------------------------------------------------------- /man/getScoreMN.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getScoreMN.Rd -------------------------------------------------------------------------------- /man/getSubsetVi.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getSubsetVi.Rd -------------------------------------------------------------------------------- /man/getSummaryDF.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getSummaryDF.Rd -------------------------------------------------------------------------------- /man/getVipVn.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getVipVn.Rd -------------------------------------------------------------------------------- /man/getWeightMN.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/getWeightMN.Rd -------------------------------------------------------------------------------- /man/linnerud.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/linnerud.Rd -------------------------------------------------------------------------------- /man/lowarp.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/lowarp.Rd -------------------------------------------------------------------------------- /man/mark.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/mark.Rd -------------------------------------------------------------------------------- /man/opls-class.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/opls-class.Rd -------------------------------------------------------------------------------- /man/opls.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/opls.Rd -------------------------------------------------------------------------------- /man/plot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/plot.Rd -------------------------------------------------------------------------------- /man/predict.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/predict.Rd -------------------------------------------------------------------------------- /man/print.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/print.Rd -------------------------------------------------------------------------------- /man/residuals.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/residuals.Rd -------------------------------------------------------------------------------- /man/ropls-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/ropls-package.Rd -------------------------------------------------------------------------------- /man/sacurine.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/sacurine.Rd -------------------------------------------------------------------------------- /man/show.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/show.Rd -------------------------------------------------------------------------------- /man/strF.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/strF.Rd -------------------------------------------------------------------------------- /man/tested.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/tested.Rd -------------------------------------------------------------------------------- /man/toW4M.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/man/toW4M.Rd -------------------------------------------------------------------------------- /ropls.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/ropls.Rproj -------------------------------------------------------------------------------- /tests/runTests.R: -------------------------------------------------------------------------------- 1 | BiocGenerics:::testPackage("ropls") -------------------------------------------------------------------------------- /vignettes/ropls-vignette.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/vignettes/ropls-vignette.Rmd -------------------------------------------------------------------------------- /vignettes/ropls-vignette.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SamGG/ropls/HEAD/vignettes/ropls-vignette.bib --------------------------------------------------------------------------------