├── CNN ├── Final_project_visualization_raw_images.ipynb ├── transfer_learning.py └── transfer_learning_adni.ipynb ├── Classification ├── MATLAB │ ├── VAE.m │ ├── main.m │ ├── predictive_fcn.m │ └── svm.m ├── clinical_preprocess.py ├── combined_preprocess.py ├── genetic_preprocess.py ├── imaging_preprocess.py ├── mlp.py └── svm.jpg ├── IMGS ├── ClinGenImg_RemovedNAs_p30.png ├── ClinGenImg_RemovedNAs_p30_important_fs.png ├── ClinImg_RemovedNAs_p30.png ├── ClinImg_RemovedNAs_p30_important_fs.png ├── PCA_clinical.png ├── PCA_clinical_LCMI.png ├── figure_1-1.png ├── figure_1-2.png ├── figure_1-3.png └── figure_1-4.png ├── Merge ├── MRI_Availability.csv ├── MRI_Availability_filtered.csv ├── MRI_Pairs.csv ├── MergeMRI_radiology_measurements.ipynb ├── Merging_Clinical_Genetic_Imaging.ipynb ├── OrganizeImagingFiles.ipynb ├── get_MRI_pairs.py ├── get_relevant_rows_MRI.py ├── match_RID_VISCODE.py ├── matched_pairs.csv └── process_MRI_files.py ├── README.md ├── Rscript ├── adni_visualization.R 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