├── .circleci └── config.yml ├── .dockerignore ├── .gitignore ├── .travis.yml ├── CMakeLists.txt ├── CONTRIBUTING.rst ├── Dockerfile ├── Dockerfile-wheels ├── LICENSE ├── README.rst ├── batch_upload_xmls_to_girder_client ├── create_tissue_mask.py ├── delete_dsa_layer_by_name.py ├── upload_json_from_xml.py └── xml_to_json.py ├── codecov.yml ├── docs ├── Makefile ├── api-docs.rst ├── authors.rst ├── conf.py ├── contributing.rst ├── examples.rst ├── examples │ ├── annotation_database_backup_and_sql_parser.ipynb │ ├── annotations_to_object_segmentation_masks.ipynb │ ├── annotations_to_semantic_segmentation_masks.ipynb │ ├── color_deconvolution.ipynb │ ├── color_normalization_and_augmentation.ipynb │ ├── creating_gallery_images_review.ipynb │ ├── doc_files │ │ ├── ModifiedHTTAnnotationProtocol.pdf │ │ └── ModifiedNucleusAnnotationProtocol.pdf │ ├── introducing_the_girder_api.rst │ ├── nuclei_segmentation.ipynb │ ├── polygon_merger_from_tiled_masks.ipynb │ ├── polygon_merger_using_rtree.ipynb │ ├── positive_pixel_count.ipynb │ ├── procedure_for_typical_annotation_project.rst │ ├── segmentation_masks_to_annotations.ipynb │ ├── semantic_segmentation_color_thresholding_approach.ipynb │ ├── semantic_segmentation_superpixel_approach.ipynb │ ├── simple_tissue_detection.ipynb │ ├── tips_for_scalable_annotation_rendering.rst │ ├── using_large_image.ipynb │ └── workflows.ipynb ├── histomicstk.annotations_and_masks.annotation_and_mask_utils.rst ├── histomicstk.annotations_and_masks.annotation_database_parser.rst ├── histomicstk.annotations_and_masks.annotations_to_object_segmentation_masks.rst ├── histomicstk.annotations_and_masks.annotations_to_semantic_segmentation_masks.rst ├── histomicstk.annotations_and_masks.masks_to_annotations_handler.rst ├── histomicstk.annotations_and_masks.polygon_merger.rst ├── histomicstk.annotations_and_masks.review_gallery.rst ├── histomicstk.annotations_and_masks.rst ├── histomicstk.features.rst ├── histomicstk.filters.edge.rst ├── histomicstk.filters.rst ├── histomicstk.filters.shape.rst ├── histomicstk.preprocessing.augmentation.rst ├── histomicstk.preprocessing.color_conversion.rst ├── histomicstk.preprocessing.color_deconvolution.rst ├── histomicstk.preprocessing.color_normalization.rst ├── histomicstk.preprocessing.rst ├── histomicstk.rst ├── histomicstk.saliency.cellularity_detection_superpixels.rst ├── histomicstk.saliency.cellularity_detection_thresholding.rst ├── histomicstk.saliency.rst ├── histomicstk.saliency.tissue_detection.rst ├── histomicstk.segmentation.label.rst ├── histomicstk.segmentation.level_set.rst ├── histomicstk.segmentation.nuclear.rst ├── histomicstk.segmentation.positive_pixel_count.rst ├── histomicstk.segmentation.rst ├── histomicstk.utils.rst ├── histomicstk.workflows.rst ├── histomicstk.workflows.specific_workflows.rst ├── histomicstk.workflows.workflow_runner.rst ├── index.rst ├── installation.rst ├── make.bat └── make_docs.sh ├── histomics homepage.txt ├── histomicstk ├── __init__.py ├── annotations_and_masks │ ├── __init__.py │ ├── annotation_and_mask_utils.py │ ├── annotation_database_parser.py │ ├── annotations_to_masks_handler.py │ ├── annotations_to_object_mask_handler.py │ ├── masks_to_annotations_handler.py │ ├── polygon_merger.py │ ├── polygon_merger_v2.py │ ├── pyrtree │ │ ├── __init__.py │ │ ├── rect.py │ │ └── rtree.py │ ├── review_gallery.py │ └── tests │ │ ├── test_annotation_and_mask_utils.py │ │ ├── test_annotation_database_parser.py │ │ ├── test_annotations_to_masks_handler.py │ │ ├── test_annotations_to_object_mask_handler.py │ │ ├── test_masks_to_annotations_handler.py │ │ ├── test_polygon_merger.py │ │ └── test_review_gallery.py ├── cli │ ├── AnnotationsToMask │ │ ├── AnnotationsToMask.py │ │ ├── AnnotationsToMask.xml │ │ └── __init__.py │ ├── ExportAperioXML │ │ ├── ExportAperioXML.py │ │ ├── ExportAperioXML.xml │ │ ├── TranslateJsonToXML.py │ │ ├── TranslateJsonToXML.xml │ │ └── __init__.py │ ├── ExtractFeaturesFromAnnotations │ │ ├── ExtractFeaturesFromAnnotations.py │ │ ├── ExtractFeaturesFromAnnotations.xml │ │ ├── PAS+.cube │ │ └── nuclei.cube │ ├── IngestAperioXML │ │ ├── IngestAperioXML.py │ │ └── IngestAperioXML.xml │ ├── SegmentWSI │ │ ├── SegmentWSI.py │ │ └── SegmentWSI.xml │ ├── TrainNetwork │ │ ├── TrainNetwork.py │ │ └── TrainNetwork.xml │ ├── TranslateXMLToJson │ │ ├── TranslateXMLToJson.py │ │ ├── TranslateXMLToJson.xml │ │ └── __init__.py │ ├── __init__.py │ ├── docker-entrypoint.sh │ ├── output_test.anot │ ├── slicer_cli_list.json │ └── utils.py ├── deeplab │ ├── README.md │ ├── __init__.py │ ├── common.py │ ├── common_test.py │ ├── core │ │ ├── __init__.py │ │ ├── conv2d_ws.py │ │ ├── conv2d_ws_test.py │ │ ├── dense_prediction_cell.py │ │ ├── dense_prediction_cell_branch5_top1_cityscapes.json │ │ ├── dense_prediction_cell_test.py │ │ ├── feature_extractor.py │ │ ├── nas_cell.py │ │ ├── nas_genotypes.py │ │ ├── nas_network.py │ │ ├── nas_network_test.py │ │ ├── preprocess_utils.py │ │ ├── preprocess_utils_test.py │ │ ├── resnet_v1_beta.py │ │ ├── resnet_v1_beta_test.py │ │ ├── utils.py │ │ ├── utils_test.py │ │ ├── xception.py │ │ └── xception_test.py │ ├── datasets │ │ ├── __init__.py │ │ ├── build_ade20k_data.py │ │ ├── build_cityscapes_data.py │ │ ├── build_data.py │ │ ├── build_voc2012_data.py │ │ ├── convert_cityscapes.sh │ │ ├── data_generator.py │ │ ├── data_generator_test.py │ │ ├── download_and_convert_ade20k.sh │ │ ├── download_and_convert_voc2012.sh │ │ ├── remove_gt_colormap.py │ │ └── wsi_data_generator.py │ ├── deeplab_demo.ipynb │ ├── deprecated │ │ ├── __init__.py │ │ └── segmentation_dataset.py │ ├── eval.py │ ├── evaluation │ │ ├── README.md │ │ ├── __init__.py │ │ ├── base_metric.py │ │ ├── eval_coco_format.py │ │ ├── eval_coco_format_test.py │ │ ├── panoptic_quality.py │ │ ├── panoptic_quality_test.py │ │ ├── parsing_covering.py │ │ ├── parsing_covering_test.py │ │ ├── streaming_metrics.py │ │ ├── streaming_metrics_test.py │ │ ├── test_utils.py │ │ └── test_utils_test.py │ ├── example run training.txt │ ├── export_model.py │ ├── input flowchart.pdf │ ├── input_preprocess.py │ ├── local_test.sh │ ├── local_test_mobilenetv2.sh │ ├── model.py │ ├── model_test.py │ ├── nets │ │ ├── __init__.py │ │ ├── alexnet.py │ │ ├── alexnet_test.py │ │ ├── cifarnet.py │ │ ├── cyclegan.py │ │ ├── cyclegan_test.py │ │ ├── dcgan.py │ │ ├── dcgan_test.py │ │ ├── i3d.py │ │ ├── i3d_test.py │ │ ├── i3d_utils.py │ │ ├── inception.py │ │ ├── inception_resnet_v2.py │ │ ├── inception_resnet_v2_test.py │ │ ├── inception_utils.py │ │ ├── inception_v1.py │ │ ├── inception_v1_test.py │ │ ├── inception_v2.py │ │ ├── inception_v2_test.py │ │ ├── inception_v3.py │ │ ├── inception_v3_test.py │ │ ├── inception_v4.py │ │ ├── inception_v4_test.py │ │ ├── lenet.py │ │ ├── mobilenet │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── conv_blocks.py │ │ │ ├── g3doc │ │ │ │ ├── edgetpu_latency.png │ │ │ │ ├── latency_pixel1.png │ │ │ │ └── madds_top1_accuracy.png │ │ │ ├── mnet_v1_vs_v2_pixel1_latency.png │ │ │ ├── mobilenet.py │ │ │ ├── mobilenet_example.ipynb │ │ │ ├── mobilenet_v2.py │ │ │ ├── mobilenet_v2_test.py │ │ │ ├── mobilenet_v3.py │ │ │ └── mobilenet_v3_test.py │ │ ├── mobilenet_v1.md │ │ ├── mobilenet_v1.png │ │ ├── mobilenet_v1.py │ │ ├── mobilenet_v1_eval.py │ │ ├── mobilenet_v1_test.py │ │ ├── mobilenet_v1_train.py │ │ ├── nasnet │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── nasnet.py │ │ │ ├── nasnet_test.py │ │ │ ├── nasnet_utils.py │ │ │ ├── nasnet_utils_test.py │ │ │ ├── pnasnet.py │ │ │ └── pnasnet_test.py │ │ ├── nets_factory.py │ │ ├── nets_factory_test.py │ │ ├── overfeat.py │ │ ├── overfeat_test.py │ │ ├── pix2pix.py │ │ ├── pix2pix_test.py │ │ ├── post_training_quantization.py │ │ ├── resnet_utils.py │ │ ├── resnet_v1.py │ │ ├── resnet_v1_test.py │ │ ├── resnet_v2.py │ │ ├── resnet_v2_test.py │ │ ├── s3dg.py │ │ ├── s3dg_test.py │ │ ├── vgg.py │ │ └── vgg_test.py │ ├── progress_helper.py │ ├── slim │ │ ├── BUILD │ │ ├── README.md │ │ ├── WORKSPACE │ │ ├── __init__.py │ │ ├── datasets │ │ │ ├── __init__.py │ │ │ ├── build_imagenet_data.py │ │ │ ├── cifar10.py │ │ │ ├── dataset_factory.py │ │ │ ├── dataset_utils.py │ │ │ ├── download_and_convert_cifar10.py │ │ │ ├── download_and_convert_flowers.py │ │ │ ├── download_and_convert_imagenet.sh │ │ │ ├── download_and_convert_mnist.py │ │ │ ├── download_and_convert_visualwakewords.py │ │ │ ├── download_and_convert_visualwakewords_lib.py │ │ │ ├── download_imagenet.sh │ │ │ ├── flowers.py │ │ │ ├── imagenet.py │ │ │ ├── imagenet_2012_validation_synset_labels.txt │ │ │ ├── imagenet_lsvrc_2015_synsets.txt │ │ │ ├── imagenet_metadata.txt │ │ │ ├── mnist.py │ │ │ ├── preprocess_imagenet_validation_data.py │ │ │ ├── process_bounding_boxes.py │ │ │ └── visualwakewords.py │ │ ├── deployment │ │ │ ├── __init__.py │ │ │ ├── model_deploy.py │ │ │ └── model_deploy_test.py │ │ ├── download_and_convert_data.py │ │ ├── eval_image_classifier.py │ │ ├── export_inference_graph.py │ │ ├── export_inference_graph_test.py │ │ ├── learning_save_zip.py │ │ ├── preprocessing │ │ │ ├── __init__.py │ │ │ ├── cifarnet_preprocessing.py │ │ │ ├── inception_preprocessing.py │ │ │ ├── lenet_preprocessing.py │ │ │ ├── preprocessing_factory.py │ │ │ └── vgg_preprocessing.py │ │ ├── scripts │ │ │ ├── export_mobilenet.sh │ │ │ ├── finetune_inception_resnet_v2_on_flowers.sh │ │ │ ├── finetune_inception_v1_on_flowers.sh │ │ │ ├── finetune_inception_v3_on_flowers.sh │ │ │ ├── finetune_resnet_v1_50_on_flowers.sh │ │ │ ├── train_cifarnet_on_cifar10.sh │ │ │ └── train_lenet_on_mnist.sh │ │ ├── setup.py │ │ ├── slim_walkthrough.ipynb │ │ └── train_image_classifier.py │ ├── train.py │ ├── utils │ │ ├── __init__.py │ │ ├── get_dataset_colormap.py │ │ ├── get_dataset_colormap_test.py │ │ ├── mask_to_xml.py │ │ ├── save_annotation.py │ │ ├── test.py │ │ ├── train_utils.py │ │ ├── wsi_dataset_util.py │ │ ├── wsi_dataset_util_large_image.py │ │ ├── xml_to_json.py │ │ └── xml_to_mask.py │ ├── vis.py │ └── vis_probability.py ├── features │ ├── CMakeLists.txt │ ├── __init__.py │ ├── _compute_marginal_glcm_probs_cython.pyx │ ├── compute_fsd_features.py │ ├── compute_global_cell_graph_features.py │ ├── compute_gradient_features.py │ ├── compute_haralick_features.py │ ├── compute_intensity_features.py │ ├── compute_morphometry_features.py │ ├── compute_nuclei_features.py │ └── graycomatrixext.py ├── filters │ ├── __init__.py │ ├── edge │ │ ├── __init__.py │ │ └── gaussian_grad.py │ └── shape │ │ ├── __init__.py │ │ ├── cdog.py │ │ ├── clog.py │ │ ├── glog.py │ │ └── vesselness.py ├── preprocessing │ ├── __init__.py │ ├── augmentation │ │ ├── __init__.py │ │ └── color_augmentation.py │ ├── color_conversion │ │ ├── __init__.py │ │ ├── lab_mean_std.py │ │ ├── lab_to_rgb.py │ │ ├── od_to_rgb.py │ │ ├── rgb_to_hsi.py │ │ ├── rgb_to_lab.py │ │ ├── rgb_to_od.py │ │ ├── rgb_to_sda.py │ │ └── sda_to_rgb.py │ ├── color_deconvolution │ │ ├── __init__.py │ │ ├── _linalg.py │ │ ├── color_convolution.py │ │ ├── color_deconvolution.py │ │ ├── complement_stain_matrix.py │ │ ├── find_stain_index.py │ │ ├── rgb_separate_stains_macenko_pca.py │ │ ├── rgb_separate_stains_xu_snmf.py │ │ ├── separate_stains_macenko_pca.py │ │ ├── separate_stains_xu_snmf.py │ │ └── stain_color_map.py │ ├── color_normalization │ │ ├── __init__.py │ │ ├── background_intensity.py │ │ ├── deconvolution_based_normalization.py │ │ ├── reinhard.py │ │ └── reinhard_stats.py │ └── tests │ │ └── test_normalization_and_augmentation.py ├── saliency │ ├── __init__.py │ ├── cellularity_detection_superpixels.py │ ├── cellularity_detection_thresholding.py │ ├── tests │ │ └── test_saliency.py │ └── tissue_detection.py ├── segmentation │ ├── __init__.py │ ├── embed_boundaries.py │ ├── label │ │ ├── CMakeLists.txt │ │ ├── __init__.py │ │ ├── _trace_object_boundaries_cython.pyx │ │ ├── area_open.py │ │ ├── compact.py │ │ ├── condense.py │ │ ├── delete.py │ │ ├── delete_border.py │ │ ├── dilate_xor.py │ │ ├── perimeter.py │ │ ├── shuffle.py │ │ ├── split.py │ │ ├── trace_object_boundaries.py │ │ └── width_open.py │ ├── level_set │ │ ├── __init__.py │ │ ├── chan_vese.py │ │ └── reg_edge.py │ ├── nuclear │ │ ├── CMakeLists.txt │ │ ├── __init__.py │ │ ├── _max_clustering_cython.pyx │ │ ├── detect_nuclei_kofahi.py │ │ ├── gaussian_voting.py │ │ ├── gvf_tracking.py │ │ ├── max_clustering.py │ │ └── min_model.py │ ├── positive_pixel_count.py │ ├── rag.py │ ├── rag_add_layer.py │ └── rag_color.py ├── utils │ ├── __init__.py │ ├── compute_tile_foreground_fraction.py │ ├── convert_image_to_matrix.py │ ├── convert_matrix_to_image.py │ ├── del2.py │ ├── eigen.py │ ├── exclude_nonfinite.py │ ├── fit_poisson_mixture.py │ ├── general_utils.py │ ├── girder_convenience_utils.py │ ├── gradient_diffusion.py │ ├── hessian.py │ ├── merge_colinear.py │ ├── sample_pixels.py │ ├── simple_mask.py │ └── tests │ │ └── test_girder_convenience_utils.py └── workflows │ ├── __init__.py │ ├── specific_workflows.py │ ├── tests │ └── test_workflow_runner.py │ └── workflow_runner.py ├── pyproject.toml ├── requirements-dev.txt ├── sample_images └── .gitignore ├── setup.py ├── test_wheels.py ├── tests ├── .dockerignore ├── Dockerfile-gc-tests ├── __init__.py ├── data │ ├── Easy1.png.sha512 │ ├── Easy1_cdog_max.npz.sha512 │ ├── Easy1_cdog_sigma_max.npz.sha512 │ ├── Easy1_clog_max.npz.sha512 │ ├── Easy1_clog_sigma_max.npz.sha512 │ ├── Easy1_nuclei_fgnd_mask.npz.sha512 │ ├── Easy1_nuclei_seg_kofahi.npy.sha512 │ ├── Easy1_nuclei_stain.npz.sha512 │ ├── L1.png.sha512 │ ├── TCGA-06-0129-01Z-00-DX3.bae772ea-dd36-47ec-8185-761989be3cc8.svs.sha512 │ ├── TCGA-06-0129-01Z-00-DX3_fgnd_mask_lres.png.sha512 │ ├── TCGA-06-0129-01Z-00-DX3_roi_nuclei_bbox.anot.sha512 │ ├── TCGA-06-0129-01Z-00-DX3_roi_nuclei_boundary.anot.sha512 │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39.svs.sha512 │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39.svs_annotations.json.sha512 │ ├── TCGA-A2-A0YE-01Z-00-DX1_GET_MergePolygons.svs_annotations.json.sha512 │ └── sample_svs_image.TCGA-DU-6399-01A-01-TS1.e8eb65de-d63e-42db-af6f-14fefbbdf7bd.svs.sha512 ├── disable_test_cli_results.py ├── docker-compose.yml ├── docker_setup.py ├── htk_test_utilities.py ├── test_blob_detection_filters.py ├── test_cli_common.py ├── test_color_conversion.py ├── test_color_deconvolution.py ├── test_color_normalization.py ├── test_feature_extraction.py ├── test_files │ ├── Easy1_nuclei_fsd_features.csv │ ├── Easy1_nuclei_gradient_features.csv │ ├── Easy1_nuclei_haralick_features.csv │ ├── Easy1_nuclei_intensity_features.csv │ ├── Easy1_nuclei_morphometry_features.csv │ ├── annotations_and_masks │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-59206_top-33505_mag-BASE.png │ │ ├── img │ │ │ ├── polygon_merger_merged.JPG │ │ │ └── polygon_merger_unmerged.JPG │ │ ├── polygon_merger_roi_masks │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44350_top-43750_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44350_top-44262_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44350_top-44774_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44350_top-45286_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44350_top-45798_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44862_top-43750_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44862_top-44262_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44862_top-44774_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44862_top-45286_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-44862_top-45798_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-43750_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-44262_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-44774_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-45286_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-45798_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-43750_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-44262_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-44774_mag-BASE.png │ │ │ ├── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-45286_mag-BASE.png │ │ │ └── TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-45798_mag-BASE.png │ │ └── sample_contours_df.tsv │ ├── saliency_GTcodes.csv │ └── sample_GTcodes.csv ├── test_glcm.py ├── test_global_cell_graph_features.py ├── test_nuclei_segmentation.py └── test_segmentation_label.py ├── tool figure.jpg └── tox.ini /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SarderLab/Histo-cloud/HEAD/.circleci/config.yml -------------------------------------------------------------------------------- /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SarderLab/Histo-cloud/HEAD/.dockerignore -------------------------------------------------------------------------------- /.gitignore: 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