├── .gitattributes ├── .gitignore ├── .gitmodules ├── AUTHORS ├── COPYING ├── Dockerfile ├── README.md ├── pyproject.toml ├── setup.py ├── tiddit ├── DBSCAN.py ├── __init__.py ├── __main__.py ├── graphlib.pyx ├── silverfish.pyx ├── tiddit_cluster.pyx ├── tiddit_contig_analysis.pyx ├── tiddit_coverage.pyx ├── tiddit_coverage_analysis.pyx ├── tiddit_gc.pyx ├── tiddit_signal.pyx ├── tiddit_stats.py ├── tiddit_variant.pyx └── tiddit_vcf_header.py └── versioned_singularity ├── README.md ├── TIDDIT.2.10.0 ├── TIDDIT.2.12.0 ├── TIDDIT.2.12.1 ├── TIDDIT.2.7.1 ├── TIDDIT.2.8.0 └── TIDDIT.2.8.1 /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SciLifeLab/TIDDIT/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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