├── .adr-dir ├── .github ├── .gitmessage.txt ├── CODEOWNERS ├── htmltest-config.yml ├── markdownlint.yml ├── pa11y.config ├── pull_request_template.md └── workflows │ ├── ci-tests.yaml │ ├── dockerhub.yml │ ├── link-checker.yml │ ├── pa11y_test.yaml │ ├── trivy-branch.yaml │ └── trivy-scheduled.yaml ├── .gitignore ├── CITATION.cff ├── CONTRIBUTING ├── ImJoy.md ├── adding_editing_information.md └── running_a_local_copy.md ├── Dockerfiles └── Dockerfile ├── LICENSE ├── README.md ├── archetypes └── default.md ├── assets ├── css │ └── styles.css ├── js │ ├── notices.js │ └── search.js └── site-manifest.json ├── config.yaml ├── content ├── english │ ├── _index.md │ ├── about │ │ ├── _index.md │ │ ├── editorial_committee.md │ │ ├── organisations_and_programs.md │ │ └── partner_organisations.md │ ├── biobanks │ │ └── _index.md │ ├── citation.md │ ├── contact │ │ └── _index.md │ ├── contribute.md │ ├── dashboards │ │ ├── RECOVAC.md │ │ ├── _index.md │ │ ├── covid_publications.md │ │ ├── covid_quantification │ │ │ ├── _index.md │ │ │ ├── covid_quant_GU.md │ │ │ ├── covid_quant_KTH.md │ │ │ ├── historic_covid_SLU.md │ │ │ ├── historic_covid_gu.md │ │ │ ├── historic_orebro_umea.md │ │ │ └── historic_stockholm.md │ │ ├── crush_covid.md │ │ ├── enteric_quantification │ │ │ ├── _index.md │ │ │ └── historic_enteric_gu.md │ │ ├── influenza_quantification │ │ │ ├── _index.md │ │ │ └── historic_influenza_SLU.md │ │ ├── lineage_competition.md │ │ ├── multidisease_serology.md │ │ ├── npc-statistics.md │ │ ├── post_covid.md │ │ ├── rsv_quantification.md │ │ ├── serology-statistics.md │ │ ├── symptom_study_sweden.md │ │ ├── vaccines.md │ │ ├── variants_region_uppsala.md │ │ └── wastewater_background.md │ ├── data-management.md │ ├── data-sources.md │ ├── datasets │ │ ├── _index.md │ │ ├── central_portal_data │ │ │ ├── _index.md │ │ │ └── query_links.md │ │ └── research_group_publications │ │ │ ├── _index.md │ │ │ ├── all.md │ │ │ ├── biochemistry.md │ │ │ ├── drug-discovery.md │ │ │ ├── genomics-transcriptomics.md │ │ │ ├── health.md │ │ │ ├── imaging.md │ │ │ ├── other.md │ │ │ ├── protein.md │ │ │ ├── public-health.md │ │ │ ├── serology.md │ │ │ └── social-science-humanities.md │ ├── editorials │ │ ├── _index.md │ │ ├── environmental_amr_surveillance.md │ │ ├── friendly_deadly_pathogens.md │ │ ├── influenza.md │ │ ├── microbioterrorism.md │ │ └── pandemic_data_sharing.md │ ├── events │ │ └── _index.md │ ├── funding │ │ └── _index.md │ ├── highlights │ │ ├── COVseq_surveillance_VOCs.md │ │ ├── G3BP_antivirual_target.md │ │ ├── Interferon_signatures_Liver.md │ │ ├── Metabolic_perturbation_therapeutic_target.md │ │ ├── Phenomics_method_drug_discovery.md │ │ ├── _index.md │ │ ├── adenovirus.md │ │ ├── alpaca-nanobody.md │ │ ├── antibiotic_resistance_development.md │ │ ├── antivirals.md │ │ ├── bacterial_replication.md │ │ ├── bevacizumab_treatment.md │ │ ├── bispecific_monomeric_nanobody.md │ │ ├── cellular_response.md │ │ ├── covidtest_spatiotemp_uppsala.md │ │ ├── covimapp.md │ │ ├── crimean_congo_interactions.md │ │ ├── drug_repurposing.md │ │ ├── estimating_impact_mobility_patterns.md │ │ ├── fragments_nsp10.md │ │ ├── igh_antibody_genes.md │ │ ├── immunofluorescence.md │ │ ├── immunopathogenesis.md │ │ ├── insights_from_genetic_mapping.md │ │ ├── massspec_pandemic_prep.md │ │ ├── mettl3_localisation.md │ │ ├── multisystem_inflammatory_syndrome.md │ │ ├── nanobodies_treatment.md │ │ ├── nanopore_sequencing.md │ │ ├── neanderthal-gene-protecting.md │ │ ├── neanderthal_gene_data_driven.md │ │ ├── nsp10_crystal_structure.md │ │ ├── oas1_splicing_and_severe_covid.md │ │ ├── omicron_variant_transition.md │ │ ├── poliovirus_replication.md │ │ ├── proteomic_blood_profiling.md │ │ ├── receptor_incompatability_infa.md │ │ ├── rna_extraction_free_rt_pcr.md │ │ ├── sars-cov2_T-cell_response.md │ │ ├── serological_investigation_collaborations.md │ │ ├── serology_in_home_sampled_dbs.md │ │ ├── symptom-study-sweden.md │ │ ├── synthetic_nanobodies.md │ │ └── x_linked_genes.md │ ├── other_national_portals.md │ ├── pathogens │ │ ├── _index.md │ │ ├── hepatitis_a_25.md │ │ ├── hepatitis_unknown_origin.md │ │ ├── listeria.md │ │ ├── mpox.md │ │ └── voc │ │ │ ├── _index.md │ │ │ └── omicron.md │ ├── plp-program-background.md │ ├── privacy.md │ ├── publications │ │ └── _index.md │ ├── register-based-research.md │ ├── research_projects │ │ ├── _index.md │ │ └── all_covid_projects.md │ ├── resources │ │ ├── NG-serology.md │ │ ├── _index.md │ │ ├── amr_wastewater.md │ │ ├── biobanking.md │ │ ├── bsl3-facility.md │ │ ├── bsl3-network.md │ │ ├── bsl3.md │ │ ├── dbs_hepatitis.md │ │ ├── diagnostic_platform.md │ │ ├── early_detection_elderly.md │ │ ├── enbiflu.md │ │ ├── g3p.md │ │ ├── gilp.md │ │ ├── gms-artic.md │ │ ├── immunomonitoring.md │ │ ├── infections_travelers.md │ │ ├── integrative_outbreak_sim.md │ │ ├── metagenomic_seq_pathogens.md │ │ ├── microsampling_monitor.md │ │ ├── monitoring_nursing_homes.md │ │ ├── monoclonal_antibodies.md │ │ ├── mould_yeast.md │ │ ├── ng_clinical_virology.md │ │ ├── ngs_surveillance.md │ │ ├── preanalytics.md │ │ ├── rapid-seq-entero.md │ │ ├── rapid-seq.md │ │ ├── rapid_dia_meta_seq.md │ │ ├── rapid_type_variants.md │ │ ├── sample-center.md │ │ ├── sample_handling.md │ │ ├── sc2reporter.md │ │ ├── seec.md │ │ ├── seq_based_diagnostics.md │ │ ├── serology.md │ │ ├── swedn.md │ │ ├── taxprofiler.md │ │ ├── test_bsl3.md │ │ ├── track_path.md │ │ └── zsc.md │ ├── search │ │ └── _index.md │ ├── share-data.md │ ├── support.md │ ├── support_services │ │ └── tutorial_ena │ │ │ ├── tutorial_ena_contact.md │ │ │ ├── tutorial_ena_faqs.md │ │ │ ├── tutorial_ena_intro.md │ │ │ ├── tutorial_ena_selectsub.md │ │ │ ├── tutorial_ena_subprep.md │ │ │ ├── tutorial_ena_subroute1.md │ │ │ ├── tutorial_ena_subroute2.md │ │ │ └── tutorial_ena_terminology.md │ ├── topics │ │ ├── _index.md │ │ ├── antibiotic-resistance.md │ │ ├── covid-19.md │ │ ├── enteric-viruses.md │ │ ├── infectious-diseases.md │ │ ├── influenza │ │ │ ├── _index.md │ │ │ └── resources.md │ │ ├── mpox.md │ │ └── rsv.md │ └── updates │ │ ├── GA4GH_connect.md │ │ ├── Influenza_topic.md │ │ ├── Listeria_sept25.md │ │ ├── PDN_news.md │ │ ├── PLP_sept2025.md │ │ ├── PPN_toolbox.md │ │ ├── Pandemic_preparedness_transition.md │ │ ├── Pathogen_resource_proposal2025.md │ │ ├── Pathogen_resource_proposal2025_extension.md │ │ ├── Pathogen_user_survey_25.md │ │ ├── Pathogen_user_survey_results_25.md │ │ ├── Pathogens_portal.md │ │ ├── Publications_update.md │ │ ├── RECOVAC.md │ │ ├── RECOVAC_update.md │ │ ├── _index.md │ │ ├── by-covid.md │ │ ├── clinmicro_dashboard_launch.md │ │ ├── covid_publications.md │ │ ├── crush_covid.md │ │ ├── data_source_repositories.md │ │ ├── editorial_committee_23.md │ │ ├── editorials.md │ │ ├── ena_tutorial.md │ │ ├── environmental_amr_surveillance.md │ │ ├── events_section.md │ │ ├── first_year.md │ │ ├── friendly_pathogens.md │ │ ├── hepatitis_a_25.md │ │ ├── hungary_mexico_PPNs.md │ │ ├── idtk_nation_resource.md │ │ ├── infA_receptors.md │ │ ├── isidore_services.md │ │ ├── microbioterrorism.md │ │ ├── mpox_aug24.md │ │ ├── nanopore_sequencing_DH.md │ │ ├── new_look.md │ │ ├── new_national_portals.md │ │ ├── npc_national_collection.md │ │ ├── postcovid_launch.md │ │ ├── request_DSNEBI_services.md │ │ ├── sample_collection_database.md │ │ ├── sars_cov2_variant_competition.md │ │ ├── second_year.md │ │ ├── section_register_based_research.md │ │ ├── serology_and_PLP.md │ │ ├── serology_testing_stats.md │ │ ├── social_science_launch.md │ │ ├── spanish_costa_rican_PPNs.md │ │ ├── update_wastewater_section.md │ │ ├── updates_June_23.md │ │ ├── vaccines_page.md │ │ ├── wastewater-data.md │ │ ├── wastewater_enteric_viruses.md │ │ └── wastewater_update_gothenburg.md └── svenska │ ├── _index.md │ ├── about │ ├── _index.md │ ├── editorial_committee.md │ ├── organisations_and_programs.md │ └── partner_organisations.md │ ├── biobanks │ └── _index.md │ ├── citation.md │ ├── contact │ └── _index.md │ ├── contribute.md │ ├── dashboards │ ├── RECOVAC.md │ ├── _index.md │ ├── covid_publications.md │ ├── covid_quantification │ │ ├── _index.md │ │ ├── covid_quant_GU.md │ │ ├── covid_quant_KTH.md │ │ ├── historic_covid_SLU.md │ │ ├── historic_covid_gu.md │ │ ├── historic_orebro_umea.md │ │ └── historic_stockholm.md │ ├── crush_covid.md │ ├── enteric_quantification │ │ ├── _index.md │ │ └── historic_enteric_gu.md │ ├── influenza_quantification │ │ ├── _index.md │ │ └── historic_influenza_SLU.md │ ├── npc-statistics.md │ ├── post_covid.md │ ├── rsv_quantification.md │ ├── serology-statistics.md │ ├── symptom_study_sweden.md │ ├── vaccines.md │ ├── variants_region_uppsala.md │ └── wastewater_background.md │ ├── other_national_portals.md │ ├── privacy.md │ ├── publications │ └── _index.md │ ├── search │ └── _index.md │ ├── share-data.md │ └── support.md ├── data ├── available_datasets.json ├── editorial_committee.json ├── editorial_committee_alumni.json ├── mpox_page_announcements.json ├── omicron_page_announcements.json ├── publications.json ├── register_based_research_examples.json └── research_projects.json ├── devbox.json ├── devbox.lock ├── doc ├── architecture │ └── decisions │ │ ├── 0001-record-architecture-decisions.md │ │ └── 0002-pathogens-portal-2-0-architecture.md └── figures │ ├── 0002-CurrentActivityDiagram.png │ ├── 0002-CurrentInfoFlow.png │ └── 0002-portal2.0-architecture.jpg ├── layouts ├── 404.html ├── _default │ ├── baseof.html │ ├── list.html │ └── single.html ├── about │ └── about_navbar.html ├── contact │ └── list.html ├── dashboards │ └── list.html ├── dashboards_topics │ └── list.html ├── data_table │ └── list.html ├── datasets │ ├── query_data.html │ └── single.html ├── editorials │ ├── list.html │ └── single.html ├── editorials_authors │ └── list.html ├── editorials_topics │ └── list.html ├── ena_tutorial │ └── single.html ├── events │ └── list.html ├── highlights │ ├── list.html │ └── single.html ├── highlights_topics │ └── list.html ├── highlights_vocs │ └── list.html ├── index.html ├── partials │ ├── dashboards.html │ ├── editorials.html │ ├── footer.html │ ├── head.html │ ├── header.html │ ├── highlights.html │ ├── navbar.html │ ├── resources_display.html │ ├── resources_sidebar.html │ ├── schema.html │ ├── toc.html │ └── topics.html ├── publications │ └── list.html ├── resources │ ├── list.html │ └── single.html ├── search │ ├── list.html │ └── list.json ├── shortcodes │ ├── RECOVAC_date_modified.html │ ├── clinmicro_dynamic_content.html │ ├── crush_covid.html │ ├── csss_date_modified.html │ ├── data_sources.html │ ├── display_funded_projects.html │ ├── editorial_committee_cards.html │ ├── funding_suggestion_form.html │ ├── funding_table.html │ ├── last_modified_lineage.html │ ├── national_portals.html │ ├── omicron_page_form_scripts.html │ ├── omicron_page_pubs_swe.html │ ├── pathogens_add_announcement.html │ ├── pathogens_list_announcements.html │ ├── pathogens_suggest_available_data.html │ ├── plotly.html │ ├── plp_table.html │ ├── postcovid_date_modified.html │ ├── postcovid_publications.html │ ├── publication_updated_date.html │ ├── publications_per_month.html │ ├── recent_ten.html │ ├── recent_ten_swe.html │ ├── register_based_research_examples.html │ ├── research_projects_table.html │ ├── serology_date_modified.html │ ├── tutorial_ena_subroute2_upload.html │ ├── vaccines_dynamic_content.html │ ├── vaccines_publications.html │ ├── voc_data_highlights.html │ ├── wastewater_map.html │ └── ww_dynamic_content.html ├── topics │ ├── list.html │ ├── resources.html │ └── single.html ├── updates │ ├── list.html │ └── single.html └── wastewater │ └── list.html ├── package.json ├── pnpm-lock.yaml └── static ├── ENA_tutorial_data ├── example_data.zip ├── metadata_template_ERC000033.xlsx └── metadata_template_ERC000033_filled.xlsx ├── apple-touch-icon.png ├── browserconfig.xml ├── dashboard_thumbs ├── CRUSH.png ├── NPC_logo.png ├── RECOVAC.png ├── auto_sero.jpg ├── lineage_competition.png ├── multi-disease-serology.jpg ├── nanopore_seq_cropped.jpg ├── postcovid.jpg ├── publications.jpg ├── symptoms_study.png ├── vaccines.jpg ├── wastewater_enteric_virus.png ├── wastewater_influenza.png ├── wastewater_rsv.png └── wastewater_sars-cov2.png ├── data_life_cycle.png ├── editorials ├── env_surveillance.jpg ├── friendly_pathogens.jpg ├── topic_covid.jpg ├── topic_infectious_disease.jpg └── topic_influenza.jpg ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── highlights └── banners │ ├── Asano_full_size.jpg │ ├── Asano_thumbnail.jpg │ ├── COV_spatiopredict_fig7.png │ ├── COVseq.png │ ├── COVseq_small.png │ ├── ELF_banner.png │ ├── ELF_large.png │ ├── G3BP_figure1.png │ ├── G3BP_thumbnail.png │ ├── Hober_covid.png │ ├── Hober_covid_bigger.png │ ├── Huffman_multi_ancestry_COVID.png │ ├── Huffman_multi_ancestry_COVID_large.png │ ├── Huffman_multi_ancestry_COVID_old.png │ ├── Interferon_liver.png │ ├── Interferon_liver_small.png │ ├── Krishnan_abstract_thumbnail.png │ ├── Krishnan_graphical_abstract.png │ ├── Rietdijk_abstract_big.png │ ├── Rietdijk_abstract_small.png │ ├── Roxhed_figure1_full.png │ ├── Roxhed_figure1_thumbnail.png │ ├── adenovirus.png │ ├── antibiotic_resistance_development.jpg │ ├── antibiotic_resistance_development_graph.jpg │ ├── antibiotic_resistance_development_small.jpg │ ├── antivirals.png │ ├── antivirals_large.png │ ├── bevacizumab_large.png │ ├── bevacizumab_small.png │ ├── bispecific_monomeric_nanobody.png │ ├── bispecific_monomeric_nanobody_large.png │ ├── bryant_elofsson.png │ ├── bryant_elofsson_large.png │ ├── cellular_response.png │ ├── cellular_response_large.png │ ├── chromosome__hullstrom.png │ ├── chromosome__hullstrom_small.png │ ├── covimapp_logo.png │ ├── crimean_congo_interactions.jpg │ ├── crimean_congo_interactions_large.jpg │ ├── csss.png │ ├── csss_large.png │ ├── csss_map.png │ ├── default_banner.jpg │ ├── drug_repurposing.jpeg │ ├── drug_repurposing_small.jpeg │ ├── fragments_nsp10.png │ ├── fragments_nsp10_large.png │ ├── igh_antibody_genes.jpg │ ├── igh_antibody_genes_small.jpg │ ├── immunofluorescence.png │ ├── immunopathogenesis.png │ ├── immunopathogenesis_large.jpg │ ├── infA_receptors_large.jpg │ ├── mettl3_localisation.png │ ├── mettl3_localisation_small.png │ ├── mis.png │ ├── mis_large.png │ ├── nanobodies_treatment.png │ ├── nanopore_sequencing.png │ ├── neanderthal-gene-protecting-large.png │ ├── neanderthal-gene-protecting.png │ ├── neanderthal_gene_data_driven.jpg │ ├── neanderthal_gene_data_driven_full.jpg │ ├── nsp10.jpg │ ├── nsp10_large.jpeg │ ├── omicron_variant_transition.png │ ├── omicron_variant_transition_large.png │ ├── proteomic_blood_profiling.png │ ├── proteomic_blood_profiling_large.png │ ├── rna_extraction_free_rt_pcr.png │ ├── sarscov2_tcell_response.png │ ├── sarscov2_tcell_response_large.png │ ├── segmentation_highReso.jpeg │ ├── segmentation_highReso_large.jpeg │ ├── synthetic_nanobodies.png │ ├── synthetic_nanobodies_large.png │ ├── tyson.jpg │ └── tyson_large.jpg ├── img ├── MinION-2.jpg ├── MinION.jpg ├── biobanks │ └── homepage_shot.png ├── csm_coronavirus_mc.jpg ├── editorial_committee │ ├── andrea.jpg │ ├── ben.jpg │ ├── johan_ank.jpg │ ├── johan_ben.jpg │ ├── laura.jpg │ ├── lusia.jpg │ └── mahmoud.jpg ├── ena_tutorial │ ├── ENA_landing_page.png │ ├── ENA_login_detailspage.png │ ├── ENA_login_startpage.png │ ├── ENA_logo_2021.png │ ├── Register_sample_metadata_opt.png │ ├── Register_sample_options.png │ ├── Register_sample_success.png │ ├── Step1_register_study.png │ ├── Step1_register_study_picb.png │ ├── Step2_register_study.png │ └── metadata_sequencing.png ├── flag-en.svg ├── flag-sv.svg ├── logos │ ├── SND_logo_eng.png │ ├── biobanksverige_logo.jpg │ ├── by-covid-logo.svg │ ├── complete_footer.png │ ├── crush_covid_logo.png │ ├── dc_branding_light_bg.svg │ ├── elixir-se-logo.png │ ├── european_covid19dataportal.svg │ ├── ga4gh_logo.png │ ├── knut-and-alice-wallenberg.jpg │ ├── nbislogo-orange-txt.svg │ ├── ngi-logo.svg │ ├── pdn_logo.png │ ├── regionuppsala_logo.png │ ├── scilifelab-logo.svg │ ├── scilifelab_kaw_logo.png │ └── uu_logo.png ├── map_marker.png ├── national_portals │ ├── estonian_portal.png │ ├── greek_portal.png │ ├── italian_portal.png │ ├── japanese_portal.svg │ ├── norwegian_portal.png │ ├── polish_portal.svg │ ├── slovenian_portal.svg │ ├── spanish_portal.svg │ └── turkish_portal.svg ├── other │ └── hepatitis_timeline.png ├── people │ ├── aa.jpg │ ├── hk.jpg │ ├── jr.jpg │ ├── kos.jpg │ ├── lh.jpg │ ├── nh.jpeg │ ├── pd.jpeg │ └── sp.jpg ├── plp_default2.png ├── site_logo │ ├── CV19DP_logo_oneliner_SWE.svg │ ├── SciLifeLab_logo.svg │ ├── eml_pathogens_logo.svg │ ├── swe_pathogens_logo.png │ └── swe_pathogens_logo.svg └── swe_pathogens_social_media.png ├── imjoy-plugins └── sars-cov-2-infection-explorer.imjoy.html ├── resorces ├── bsl3-facility-crispr-based-antiviral.png ├── bsl3-facility-htp-av.png ├── bsl3-facility-project-request-form.pdf ├── bsl3_network_members.png ├── multi-disease-serology.jpg ├── reporter_exreport.png ├── reporter_pangograph.png └── reporter_phylonodes.png ├── resources_thumbs ├── biobanks.jpg ├── biopsy_microtome.jpg ├── bsl3_lab.png ├── bsl3_test.jpg ├── dbs_hepatitis.png ├── detection-elderly.jpg ├── diagnostic_platform.png ├── g3p.jpg ├── gilp.jpg ├── metagenomic-seq.jpg ├── microsampling.jpg ├── monoclonal-antibodies.jpg ├── mould_yeast.jpg ├── multi-disease-serology.jpg ├── nanopore_seq_cropped.jpg ├── next-gen-clin-microbio.jpg ├── ng_serology_flavivirus.jpg ├── ngs-diagnositics.jpg ├── ngs_platform.jpg ├── nursing_home.jpg ├── pandemic_sample_centers.jpg ├── preanalytics.jpg ├── rapid-seq-entero.jpg ├── rapid-seq.jpg ├── rapid_dia_meta_seq.png ├── rapid_typing.jpg ├── seq-viral-diagnostics.jpg ├── swedn.jpg ├── systems-level-immunomonitoring.jpg ├── track-path.jpg ├── travel.jpg ├── wastewater-plant.jpg ├── wastewater.jpg └── zsc-pandemic-prep.jpg ├── topic_thumbs ├── topic_antibiotic.jpg ├── topic_covid.jpg ├── topic_enteric.png ├── topic_infectious.jpg ├── topic_influenza.jpg ├── topic_mpox.jpg └── topic_rsv.jpg ├── updates └── banners │ ├── COVIDportal_banner.png │ ├── DDLS_EBI_screen.png │ ├── GA4GH_connect.jpg │ ├── IDTk.png │ ├── ISIDORe.png │ ├── Listeria.jpg │ ├── PDN_official.png │ ├── Pathogens-Portal-Logo-Netherlands-FINAL.png │ ├── Portal_logo_postcovid_2.png │ ├── RECOVAC_Jan23update.png │ ├── RECOVAC_image.png │ ├── bycovid_concept.png │ ├── bycovid_logo.png │ ├── covid19_pubs_sw_large.png │ ├── covid19_pubs_sw_small.png │ ├── crush_covid.png │ ├── crush_covid_large.png │ ├── data_sources_repos.png │ ├── default_banner.png │ ├── editorial_committee_23.png │ ├── editorials_launch.jpg │ ├── ena_tutorial_launch.png │ ├── ena_tutorial_launch_large.png │ ├── first_year_portal.png │ ├── first_year_portal_in_numbers.png │ ├── first_year_portal_timeline.png │ ├── hepatitis_a_25.png │ ├── hungary_mexico.png │ ├── nanopore_seq_cropped.jpg │ ├── national_collction_shot.png │ ├── network_PDN.jpg │ ├── plp_default2.png │ ├── postcovid_map_portal.png │ ├── register_based_research.png │ ├── sars_cov2_variant_competition.png │ ├── sars_cov2_variant_competition_large.png │ ├── scd.png │ ├── scd_large.png │ ├── second_year_portal.png │ ├── serology_testing_statistics.png │ ├── swe_pathogens_logo.png │ ├── topic_covid.jpg │ ├── topic_influenza.jpg │ ├── vaccines_heatmap_large.png │ ├── vaccines_heatmap_small.png │ ├── wastewater_cycle.png │ ├── wastewater_data.png │ ├── wastewater_data_large.png │ └── wastewater_stockholm_figure.png ├── voc ├── delta_omicron_all_B1_2_simple.pdf ├── delta_omicron_all_B1_2_simple.png ├── nextstrain_build.png └── nextstrain_omicron.png └── wastewater ├── avrinningskarta_inlopp_kungsangsverket.pdf ├── map_Bromma_Henriksdal.pdf ├── map_Kappala.pdf ├── map_orebro.pdf ├── map_umeaa.jpg ├── sjolunda.pdf └── wastewater_slusites.png /.adr-dir: 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