├── .github └── workflows │ └── python_publish.yml ├── .gitignore ├── README.md ├── example └── bioconda-lefse_run.sh ├── lefse ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-38.pyc │ └── lefse.cpython-38.pyc ├── lefse.py ├── lefse.pyc ├── lefse2circlader.py ├── lefse_format_input.py ├── lefse_plot_cladogram.py ├── lefse_plot_features.py ├── lefse_plot_res.py ├── lefse_run.py └── qiime2lefse.py ├── lefsebiom ├── AbundanceTable.py ├── CClade.py ├── ConstantsBreadCrumbs.py ├── ValidateData.py └── __init__.py ├── license.txt ├── requirements.txt └── setup.py /.github/workflows/python_publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SegataLab/lefse/HEAD/.github/workflows/python_publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | __pycache__ 2 | example/test* 3 | 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