├── README.md ├── classification.py ├── classification_thomas-manghi.py ├── data ├── abundance.txt.bz2 ├── abundance_stoolsubset.txt.bz2 ├── marker_presence.txt.bz2 └── markers2clades_DB.txt.bz2 ├── dataset_selection.py ├── regression_dev.py ├── scripts ├── classification_abundance.txt ├── classification_marker_presence.txt ├── compute_test.txt ├── dataset_selection_abundance.txt ├── dataset_selection_marker_presence.txt ├── plot_barchart.txt ├── plot_correlation.txt └── plot_heatmap.sh └── tools ├── compute_test.py ├── markers2clades.py ├── plot_annotatedheatmap.py ├── plot_barchart.py ├── plot_correlation.py ├── plot_roccurves.py └── utils.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SegataLab/metaml/HEAD/README.md -------------------------------------------------------------------------------- /classification.py: -------------------------------------------------------------------------------- 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