├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── hap_eval ├── __init__.py └── hap_eval.py ├── pyproject.toml ├── requirements.txt ├── scripts └── cleanup_vcf.py ├── setup.cfg └── tests └── test_vcfevaluator.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/.gitmodules -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/README.md -------------------------------------------------------------------------------- /hap_eval/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/hap_eval/__init__.py -------------------------------------------------------------------------------- /hap_eval/hap_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/hap_eval/hap_eval.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | python-Levenshtein >= 0.11.2 2 | -------------------------------------------------------------------------------- /scripts/cleanup_vcf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/scripts/cleanup_vcf.py -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/setup.cfg -------------------------------------------------------------------------------- /tests/test_vcfevaluator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sentieon/hap-eval/HEAD/tests/test_vcfevaluator.py --------------------------------------------------------------------------------